Wall clock time and date at job start Tue Mar 31 2020 05:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.46954 * 2 1 4 4 C 1.53004 * 109.47423 * 119.99665 * 2 1 3 5 5 N 1.46491 * 109.47149 * 174.79785 * 4 2 1 6 6 C 1.46499 * 120.00401 * 275.02974 * 5 4 2 7 7 C 1.50704 * 109.47405 * 265.37439 * 6 5 4 8 8 H 1.08001 * 119.99912 * 359.97438 * 7 6 5 9 9 C 1.37879 * 120.00025 * 179.97438 * 7 6 5 10 10 N 1.31506 * 120.00057 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99721 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47308 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.47085 * 119.99947 * 11 9 7 14 14 H 1.48497 * 109.47045 * 239.99613 * 11 9 7 15 15 C 1.34777 * 120.00062 * 95.03575 * 5 4 2 16 16 O 1.21615 * 119.99756 * 3.01713 * 15 5 4 17 17 C 1.47386 * 120.00283 * 183.02140 * 15 5 4 18 18 C 1.36410 * 127.18770 * 345.43585 * 17 15 5 19 19 O 1.33654 * 108.39309 * 180.02562 * 18 17 15 20 20 C 1.34214 * 110.90800 * 0.02562 * 19 18 17 21 21 S 1.76206 * 125.43480 * 180.02562 * 20 19 18 22 22 N 1.65600 * 107.21594 * 270.02195 * 21 20 19 23 23 O 1.42099 * 106.40419 * 23.56151 * 21 20 19 24 24 O 1.42102 * 106.40132 * 156.48449 * 21 20 19 25 25 C 1.34174 * 109.12831 * 359.97438 * 20 19 18 26 26 H 1.09002 * 109.47527 * 300.00152 * 1 2 3 27 27 H 1.09001 * 109.47223 * 60.00230 * 1 2 3 28 28 H 1.09007 * 109.47106 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47527 * 239.99848 * 2 1 3 30 30 H 1.09002 * 109.47283 * 305.84955 * 3 2 1 31 31 H 1.08991 * 109.47237 * 65.85197 * 3 2 1 32 32 H 1.09006 * 109.46744 * 185.85346 * 3 2 1 33 33 H 1.09001 * 109.46362 * 54.79899 * 4 2 1 34 34 H 1.08994 * 109.47260 * 294.80259 * 4 2 1 35 35 H 1.09002 * 109.46854 * 25.37545 * 6 5 4 36 36 H 1.09001 * 109.47775 * 145.36935 * 6 5 4 37 37 H 0.96999 * 120.00346 * 180.02562 * 10 9 7 38 38 H 1.07995 * 125.80837 * 0.05343 * 18 17 15 39 39 H 0.97000 * 119.99748 * 150.00323 * 22 21 20 40 40 H 0.96999 * 120.00022 * 330.00026 * 22 21 20 41 41 H 1.07993 * 127.02505 * 180.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.4996 -0.8305 1.1883 6 6 4.1213 -1.9417 0.4636 7 6 4.4295 -3.0594 1.4263 8 1 4.1870 -2.9526 2.4733 9 6 5.0212 -4.2184 0.9704 10 7 5.3161 -4.3486 -0.3045 11 14 5.4039 -5.6035 2.1639 12 1 4.9766 -5.2113 3.5309 13 1 4.6742 -6.8291 1.7503 14 1 6.8644 -5.8717 2.1590 15 6 4.2705 0.0910 1.7989 16 8 3.7553 0.9822 2.4464 17 6 5.7380 0.0188 1.6818 18 6 6.4789 -1.0385 1.2415 19 8 7.7704 -0.6978 1.2901 20 6 7.9184 0.5545 1.7496 21 16 9.4556 1.3880 1.9669 22 7 9.9745 1.0659 3.5061 23 8 10.3808 0.7582 1.0914 24 8 9.1675 2.7789 1.9234 25 6 6.7090 1.0708 2.0162 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.5936 1.9857 -0.8330 31 1 1.7647 1.9252 0.9377 32 1 3.1249 1.4443 -0.1048 33 1 1.6026 -1.7184 1.2970 34 1 1.7547 -0.1564 2.1368 35 1 3.4374 -2.3022 -0.3048 36 1 5.0448 -1.5995 -0.0035 37 1 5.7320 -5.1641 -0.6253 38 1 6.0884 -1.9891 0.9096 39 1 10.9242 1.0361 3.7014 40 1 9.3289 0.9069 4.2123 41 1 6.4930 2.0576 2.3981 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000770715086.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:26 Heat of formation + Delta-G solvation = -90.837727 kcal Electronic energy + Delta-G solvation = -27113.183497 eV Core-core repulsion = 23122.450468 eV Total energy + Delta-G solvation = -3990.733029 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.113 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.25784 -39.20998 -37.24793 -36.01027 -35.95432 -34.67592 -33.35376 -32.68494 -32.43612 -30.02248 -27.79602 -26.86397 -26.02871 -23.55470 -22.36325 -22.09596 -20.27211 -19.63632 -19.20306 -17.91191 -17.57745 -16.91179 -16.68045 -16.27913 -15.78719 -15.69274 -15.44163 -15.00448 -14.70876 -14.45251 -14.17417 -13.42449 -13.12014 -12.95118 -12.75586 -12.59888 -12.32657 -12.29460 -12.21043 -12.09515 -11.98546 -11.60091 -11.42367 -11.29636 -11.18840 -10.99994 -10.69412 -10.66927 -10.60409 -10.47473 -10.22862 -9.97213 -9.74564 -9.36229 -8.99545 -8.70678 -7.89192 -6.52014 -4.64664 0.21763 1.41281 2.01147 2.89362 3.05075 3.15581 3.18680 3.32877 3.55246 3.84121 3.87457 4.10962 4.73517 4.80039 4.93159 5.17148 5.21154 5.24147 5.34310 5.49974 5.60650 5.82240 5.83485 5.92488 5.95947 6.11079 6.18274 6.23332 6.28612 6.31750 6.42963 6.57081 6.60058 6.70234 6.84271 6.86982 7.09329 7.32343 7.46510 7.66641 8.11277 8.49458 8.85503 9.05810 10.50941 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.009649 B = 0.005009 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2901.162980 B = 5588.647349 C = 7835.150066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.113 4.113 3 C -0.137 4.137 4 C 0.125 3.875 5 N -0.589 5.589 6 C 0.214 3.786 7 C -0.557 4.557 8 H 0.070 0.930 9 C 0.066 3.934 10 N -0.879 5.879 11 Si 0.899 3.101 12 H -0.269 1.269 13 H -0.278 1.278 14 H -0.277 1.277 15 C 0.590 3.410 16 O -0.566 6.566 17 C -0.268 4.268 18 C 0.084 3.916 19 O -0.127 6.127 20 C -0.612 4.612 21 S 2.742 3.258 22 N -1.246 6.246 23 O -0.950 6.950 24 O -0.945 6.945 25 C -0.030 4.030 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.071 0.929 30 H 0.044 0.956 31 H 0.058 0.942 32 H 0.050 0.950 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.047 0.953 36 H 0.043 0.957 37 H 0.274 0.726 38 H 0.281 0.719 39 H 0.422 0.578 40 H 0.419 0.581 41 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.198 6.654 3.932 8.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.133 4.133 3 C -0.194 4.194 4 C 0.002 3.998 5 N -0.318 5.318 6 C 0.094 3.906 7 C -0.595 4.595 8 H 0.089 0.911 9 C -0.140 4.140 10 N -0.515 5.515 11 Si 0.725 3.275 12 H -0.193 1.193 13 H -0.204 1.204 14 H -0.202 1.202 15 C 0.380 3.620 16 O -0.448 6.448 17 C -0.272 4.272 18 C 0.011 3.989 19 O -0.020 6.020 20 C -0.742 4.742 21 S 2.824 3.176 22 N -0.921 5.921 23 O -0.940 6.940 24 O -0.935 6.935 25 C -0.052 4.052 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.083 0.917 38 H 0.295 0.705 39 H 0.253 0.747 40 H 0.247 0.753 41 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 2.604 7.338 3.199 8.418 hybrid contribution -0.551 -1.384 1.138 1.875 sum 2.053 5.954 4.337 7.647 Atomic orbital electron populations 1.21746 0.95078 1.01602 1.01479 1.21517 0.95425 0.96965 0.99375 1.21753 1.00954 0.95560 1.01174 1.21422 0.80004 1.00662 0.97699 1.47919 1.05856 1.26059 1.51950 1.19964 0.94718 0.83338 0.92608 1.21656 1.41809 1.00137 0.95891 0.91131 1.25082 0.94932 0.98394 0.95591 1.69918 1.40009 1.28280 1.13278 0.86396 0.78542 0.81486 0.81096 1.19322 1.20360 1.20239 1.17037 0.84610 0.81452 0.78918 1.90681 1.74762 1.36451 1.42913 1.21666 0.95258 0.95768 1.14556 1.28415 0.79046 1.01717 0.89704 1.84061 1.28744 1.25350 1.63877 1.34912 1.20317 0.95820 1.23128 1.00762 0.71268 0.73195 0.72374 1.53094 1.17713 1.92405 1.28904 1.93601 1.60415 1.76641 1.63322 1.93663 1.84741 1.28980 1.86109 1.22932 0.89727 0.99378 0.93161 0.92765 0.92870 0.92625 0.91013 0.93679 0.92335 0.93128 0.90486 0.90398 0.93478 0.93939 0.91653 0.70470 0.74745 0.75321 0.81172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.19 37.15 0.34 -1.40 16 2 C -0.11 -1.72 3.12 -90.62 -0.28 -2.01 16 3 C -0.14 -2.15 8.07 37.16 0.30 -1.85 16 4 C 0.13 2.19 4.94 -4.04 -0.02 2.17 16 5 N -0.59 -11.81 2.29 -176.35 -0.40 -12.21 16 6 C 0.21 4.62 4.71 -5.19 -0.02 4.60 16 7 C -0.56 -12.91 7.31 -34.44 -0.25 -13.16 16 8 H 0.07 1.70 7.81 -52.49 -0.41 1.29 16 9 C 0.07 1.55 4.96 -17.82 -0.09 1.46 16 10 N -0.88 -21.56 13.29 55.43 0.74 -20.82 16 11 Si 0.90 18.73 29.54 -169.99 -5.02 13.71 16 12 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 13 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 14 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 15 C 0.59 12.39 6.33 -12.54 -0.08 12.31 16 16 O -0.57 -12.53 15.62 5.26 0.08 -12.45 16 17 C -0.27 -5.35 6.10 -103.27 -0.63 -5.98 16 18 C 0.08 1.69 9.60 30.07 0.29 1.98 16 19 O -0.13 -2.38 10.52 7.65 0.08 -2.30 16 20 C -0.61 -9.91 7.32 29.30 0.21 -9.69 16 21 S 2.74 35.36 6.43 -107.50 -0.69 34.67 16 22 N -1.25 -10.33 9.52 60.35 0.57 -9.76 16 23 O -0.95 -15.25 18.02 -57.28 -1.03 -16.28 16 24 O -0.95 -14.07 17.82 -57.17 -1.02 -15.09 16 25 C -0.03 -0.51 10.73 -37.46 -0.40 -0.92 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 30 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.95 8.01 -51.93 -0.42 0.53 16 32 H 0.05 0.89 6.99 -51.93 -0.36 0.53 16 33 H 0.08 1.31 8.11 -51.93 -0.42 0.89 16 34 H 0.08 1.39 7.24 -51.93 -0.38 1.01 16 35 H 0.05 1.06 8.04 -51.93 -0.42 0.64 16 36 H 0.04 0.95 4.71 -51.93 -0.24 0.71 16 37 H 0.27 6.40 8.31 -40.82 -0.34 6.06 16 38 H 0.28 6.04 3.06 -52.49 -0.16 5.88 16 39 H 0.42 2.52 8.96 -34.47 -0.31 2.21 16 40 H 0.42 2.73 8.96 -34.47 -0.31 2.42 16 41 H 0.17 2.56 8.06 -52.49 -0.42 2.14 16 LS Contribution 355.74 15.07 5.36 5.36 Total: -1.00 -30.77 355.74 -7.06 -37.84 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -5.10 Total: 9.82 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: -0.64 Total: -12.49 kcal Atomic # 7 Polarization: -43.70 SS G_CDS: 0.91 Total: -42.79 kcal Atomic # 8 Polarization: -44.24 SS G_CDS: -1.89 Total: -46.13 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.02 Total: 13.71 kcal Atomic # 16 Polarization: 35.36 SS G_CDS: -0.69 Total: 34.67 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.77 -7.06 -37.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770715086.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.000 kcal (2) G-P(sol) polarization free energy of solvation -30.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds