Wall clock time and date at job start Tue Mar 31 2020 06:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 120.00136 * 2 1 4 4 H 1.48496 * 109.47169 * 240.00111 * 3 2 1 5 5 H 1.48499 * 109.46958 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47052 * 119.99949 * 3 2 1 7 7 C 1.37875 * 120.00079 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00300 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99922 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47084 * 179.97438 * 9 7 2 11 11 S 1.81407 * 109.47211 * 179.97438 * 10 9 7 12 12 O 1.42100 * 110.54245 * 68.37577 * 11 10 9 13 13 O 1.42099 * 110.54026 * 291.62635 * 11 10 9 14 14 N 1.65601 * 104.44838 * 179.97438 * 11 10 9 15 15 C 1.34781 * 119.99887 * 65.00256 * 14 11 10 16 16 O 1.21281 * 120.00142 * 359.97438 * 15 14 11 17 17 C 1.50699 * 119.99681 * 179.97438 * 15 14 11 18 18 C 1.53004 * 109.46989 * 180.02562 * 17 15 14 19 19 C 1.52999 * 109.47363 * 180.02562 * 18 17 15 20 20 C 1.52991 * 109.47130 * 179.97438 * 19 18 17 21 21 C 1.50699 * 109.47169 * 179.97438 * 20 19 18 22 22 C 1.35349 * 126.91285 * 274.95821 * 21 20 19 23 23 N 1.33777 * 106.49799 * 180.02562 * 22 21 20 24 24 N 1.28634 * 108.88349 * 359.97438 * 23 22 21 25 25 N 1.28715 * 110.18090 * 359.97438 * 24 23 22 26 26 H 0.97000 * 125.86568 * 180.02562 * 25 24 23 27 27 H 0.97002 * 120.00165 * 0.02562 * 1 2 3 28 28 H 1.08996 * 109.47400 * 59.99943 * 9 7 2 29 29 H 1.09004 * 109.47310 * 299.99481 * 9 7 2 30 30 H 1.09007 * 109.47371 * 60.00360 * 10 9 7 31 31 H 1.08995 * 109.47449 * 300.00048 * 10 9 7 32 32 H 0.96996 * 119.99763 * 244.99446 * 14 11 10 33 33 H 1.09006 * 109.46975 * 60.00447 * 17 15 14 34 34 H 1.08998 * 109.47555 * 299.99964 * 17 15 14 35 35 H 1.08998 * 109.47138 * 60.00069 * 18 17 15 36 36 H 1.09007 * 109.46776 * 300.00050 * 18 17 15 37 37 H 1.09003 * 109.46598 * 60.00082 * 19 18 17 38 38 H 1.09002 * 109.46987 * 300.00335 * 19 18 17 39 39 H 1.08998 * 109.47229 * 59.99784 * 20 19 18 40 40 H 1.09002 * 109.47484 * 300.00061 * 20 19 18 41 41 H 1.07997 * 126.75241 * 0.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6620 -0.0027 11 16 1.3382 -5.2331 -0.0034 12 8 0.6638 -5.4190 -1.2403 13 8 0.6647 -5.4204 1.2337 14 7 2.5205 -6.3927 -0.0052 15 6 3.3477 -6.5133 1.0520 16 8 3.2266 -5.7723 2.0045 17 6 4.4232 -7.5690 1.0506 18 6 5.2148 -7.4924 2.3577 19 6 6.3071 -8.5637 2.3560 20 6 7.0990 -8.4867 3.6627 21 6 8.1744 -9.5423 3.6614 22 6 8.0427 -10.8375 4.0316 23 7 9.2445 -11.4026 3.8711 24 7 10.0658 -10.5162 3.4301 25 7 9.4660 -9.3862 3.2890 26 1 9.8704 -8.5639 2.9709 27 1 -0.4850 0.8401 -0.0004 28 1 0.6247 -2.5563 -0.8919 29 1 0.6240 -2.5575 0.8881 30 1 2.8719 -3.6052 0.8874 31 1 2.8719 -3.6036 -0.8926 32 1 2.6175 -6.9852 -0.7671 33 1 5.0948 -7.4023 0.2083 34 1 3.9653 -8.5541 0.9607 35 1 4.5429 -7.6593 3.1996 36 1 5.6726 -6.5073 2.4479 37 1 6.9788 -8.3963 1.5140 38 1 5.8495 -9.5489 2.2655 39 1 6.4275 -8.6537 4.5049 40 1 7.5565 -7.5014 3.7528 41 1 7.1441 -11.3198 4.3868 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000774174357.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:02 Heat of formation + Delta-G solvation = -44.947623 kcal Electronic energy + Delta-G solvation = -24866.939300 eV Core-core repulsion = 20910.488967 eV Total energy + Delta-G solvation = -3956.450333 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.119 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.72905 -40.22690 -36.78438 -36.42481 -35.65662 -34.50520 -33.93274 -33.81285 -32.81492 -31.22134 -29.63742 -25.87839 -25.61051 -23.42256 -22.78383 -21.82946 -21.66648 -21.10081 -19.38812 -18.66105 -17.91321 -17.52771 -16.66764 -16.48869 -16.43967 -15.68527 -15.18979 -15.11871 -15.01578 -14.72953 -14.58268 -14.56276 -13.56413 -13.34624 -13.21252 -12.77232 -12.56205 -12.33040 -12.09677 -11.85142 -11.80615 -11.76502 -11.71072 -11.65651 -11.29752 -11.11159 -11.07344 -11.03640 -11.00537 -10.90138 -10.46380 -10.41984 -10.27509 -9.75068 -9.59268 -9.22692 -8.52897 -6.15227 -4.20994 0.46114 1.10009 2.02312 2.12178 2.28815 2.69342 3.25190 3.30053 3.31774 3.82111 3.99161 4.11979 4.19807 4.29827 4.34185 4.41774 4.57984 4.61405 4.81661 4.85398 4.86632 4.97272 5.02845 5.19903 5.20577 5.23195 5.35965 5.46074 5.55102 5.67541 5.69056 5.75174 5.90988 6.36699 6.41132 6.58304 7.24640 7.31397 7.40510 7.77146 8.01013 8.13190 8.81564 9.43536 10.95751 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.015927 B = 0.002091 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.636643 B =13385.059406 C =14732.712536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.902 3.098 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.520 4.520 8 H 0.061 0.939 9 C 0.030 3.970 10 C -0.575 4.575 11 S 2.566 3.434 12 O -0.955 6.955 13 O -0.939 6.939 14 N -1.061 6.061 15 C 0.531 3.469 16 O -0.489 6.489 17 C -0.143 4.143 18 C -0.112 4.112 19 C -0.115 4.115 20 C -0.051 4.051 21 C -0.004 4.004 22 C -0.049 4.049 23 N -0.266 5.266 24 N -0.085 5.085 25 N -0.391 5.391 26 H 0.448 0.552 27 H 0.266 0.734 28 H 0.034 0.966 29 H 0.036 0.964 30 H 0.130 0.870 31 H 0.120 0.880 32 H 0.428 0.572 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.099 0.901 40 H 0.082 0.918 41 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.303 -19.057 2.983 24.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.729 3.271 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.201 1.201 7 C -0.560 4.560 8 H 0.079 0.921 9 C -0.010 4.010 10 C -0.710 4.710 11 S 2.666 3.334 12 O -0.946 6.946 13 O -0.929 6.929 14 N -0.822 5.822 15 C 0.317 3.683 16 O -0.360 6.360 17 C -0.184 4.184 18 C -0.150 4.150 19 C -0.154 4.154 20 C -0.091 4.091 21 C -0.138 4.138 22 C -0.206 4.206 23 N -0.133 5.133 24 N -0.065 5.065 25 N -0.111 5.111 26 H 0.293 0.707 27 H 0.076 0.924 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.149 0.851 31 H 0.139 0.861 32 H 0.263 0.737 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.118 0.882 40 H 0.101 0.899 41 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 15.419 -19.552 3.624 25.163 hybrid contribution 0.284 1.978 -0.654 2.102 sum 15.703 -17.575 2.970 23.754 Atomic orbital electron populations 1.69940 1.06100 1.27367 1.49347 1.25067 0.95006 0.99549 0.94861 0.86503 0.79477 0.82432 0.78690 1.20095 1.21049 1.20052 1.20925 0.93020 0.89606 1.52428 0.92065 1.18986 0.92631 0.90325 0.99026 1.30332 1.13692 1.16292 1.10641 1.06685 0.75001 0.77259 0.74442 1.93591 1.70554 1.85311 1.45141 1.93596 1.70322 1.84367 1.44591 1.55457 1.49370 1.50402 1.26954 1.20706 0.81717 0.85077 0.80812 1.90918 1.69546 1.43191 1.32390 1.21814 0.96614 0.98668 1.01335 1.21438 0.97024 0.99791 0.96745 1.21620 0.97258 1.00119 0.96357 1.20230 0.93461 0.95153 1.00228 1.22403 0.87140 0.98876 1.05416 1.23465 0.98410 0.91677 1.07065 1.75118 1.00463 1.23780 1.13990 1.78315 1.21295 0.88570 1.18370 1.45169 1.08203 1.12728 1.45036 0.70687 0.92428 0.94773 0.94573 0.85139 0.86135 0.73683 0.87920 0.87890 0.90195 0.90427 0.91684 0.90855 0.88223 0.89942 0.79203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.24 13.29 55.43 0.74 -25.51 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.52 -14.28 9.11 -34.44 -0.31 -14.59 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.03 0.75 4.98 -27.88 -0.14 0.61 16 10 C -0.57 -10.92 5.82 37.16 0.22 -10.70 16 11 S 2.57 44.09 5.11 -107.50 -0.55 43.54 16 12 O -0.96 -18.19 18.08 -57.54 -1.04 -19.23 16 13 O -0.94 -19.78 17.04 -64.78 -1.10 -20.88 16 14 N -1.06 -11.75 5.60 31.22 0.17 -11.58 16 15 C 0.53 5.88 7.57 -10.98 -0.08 5.80 16 16 O -0.49 -7.56 14.08 -11.55 -0.16 -7.72 16 17 C -0.14 -0.82 5.70 -27.88 -0.16 -0.98 16 18 C -0.11 -0.62 4.50 -26.73 -0.12 -0.74 16 19 C -0.12 -0.39 5.20 -26.74 -0.14 -0.53 16 20 C -0.05 -0.17 5.78 -27.89 -0.16 -0.33 16 21 C 0.00 -0.02 6.56 -82.09 -0.54 -0.56 16 22 C -0.05 -0.35 11.99 -17.73 -0.21 -0.56 16 23 N -0.27 -2.74 12.41 30.23 0.38 -2.37 16 24 N -0.09 -0.81 13.38 60.35 0.81 0.00 16 25 N -0.39 -2.23 6.98 33.54 0.23 -1.99 16 26 H 0.45 0.98 8.96 -190.40 -1.71 -0.72 16 27 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 28 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.13 2.42 7.19 -51.92 -0.37 2.05 16 31 H 0.12 1.96 8.14 -51.93 -0.42 1.53 16 32 H 0.43 2.92 8.79 -34.47 -0.30 2.61 16 33 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.08 0.53 8.10 -51.93 -0.42 0.11 16 36 H 0.08 0.50 8.10 -51.93 -0.42 0.08 16 37 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 38 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.10 0.28 8.14 -51.93 -0.42 -0.15 16 40 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 41 H 0.19 0.82 8.06 -52.49 -0.42 0.40 16 LS Contribution 368.02 15.07 5.55 5.55 Total: -1.00 -40.02 368.02 -8.74 -48.76 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -6.99 Total: -3.53 kcal Atomic # 6 Polarization: -19.31 SS G_CDS: -1.75 Total: -21.06 kcal Atomic # 7 Polarization: -43.77 SS G_CDS: 2.33 Total: -41.45 kcal Atomic # 8 Polarization: -45.52 SS G_CDS: -2.31 Total: -47.83 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: 44.09 SS G_CDS: -0.55 Total: 43.54 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -40.02 -8.74 -48.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774174357.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.814 kcal (2) G-P(sol) polarization free energy of solvation -40.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds