Wall clock time and date at job start Tue Mar 31 2020 05:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46581 * 160.80211 * 3 2 1 5 5 C 1.37103 * 120.00351 * 96.38011 * 4 3 2 6 6 H 1.07999 * 120.00119 * 159.72747 * 5 4 3 7 7 C 1.38948 * 119.99467 * 339.45004 * 5 4 3 8 8 N 1.31405 * 120.00499 * 352.26365 * 7 5 4 9 9 Si 1.86806 * 119.99743 * 172.26233 * 7 5 4 10 10 H 1.48506 * 109.47009 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47058 * 119.99789 * 9 7 5 12 12 H 1.48493 * 109.47049 * 240.00037 * 9 7 5 13 13 C 1.34781 * 119.99734 * 276.37165 * 4 3 2 14 14 O 1.21300 * 119.99789 * 174.61300 * 13 4 3 15 15 C 1.50692 * 120.00263 * 354.62097 * 13 4 3 16 16 H 1.08999 * 109.47190 * 32.51793 * 15 13 4 17 17 O 1.42896 * 109.47574 * 152.51980 * 15 13 4 18 18 C 1.53000 * 109.47306 * 272.52081 * 15 13 4 19 19 H 1.09002 * 109.47163 * 303.02715 * 18 15 13 20 20 O 1.42904 * 109.47092 * 63.01967 * 18 15 13 21 21 C 1.50694 * 109.47546 * 183.01919 * 18 15 13 22 22 N 1.30109 * 124.95373 * 304.70076 * 21 18 15 23 23 C 1.35777 * 109.64594 * 179.86628 * 22 21 18 24 24 C 1.39740 * 133.60204 * 180.10790 * 23 22 21 25 25 C 1.36604 * 119.88543 * 180.29981 * 24 23 22 26 26 C 1.38767 * 120.67298 * 359.97438 * 25 24 23 27 27 C 1.37863 * 120.45158 * 0.05922 * 26 25 24 28 28 C 1.38828 * 119.68351 * 359.91991 * 27 26 25 29 29 N 1.36037 * 124.94854 * 124.99567 * 21 18 15 30 30 H 0.96994 * 126.35037 * 359.95222 * 29 21 18 31 31 H 1.08999 * 109.47583 * 40.80352 * 3 2 1 32 32 H 1.08999 * 109.47277 * 280.79445 * 3 2 1 33 33 H 0.96997 * 120.00638 * 180.02562 * 8 7 5 34 34 H 0.96701 * 113.99948 * 59.99555 * 17 15 13 35 35 H 0.96693 * 114.00200 * 72.19312 * 20 18 15 36 36 H 1.07999 * 120.05692 * 0.32867 * 24 23 22 37 37 H 1.08003 * 119.66056 * 179.97438 * 25 24 23 38 38 H 1.08001 * 119.77863 * 180.02562 * 26 25 24 39 39 H 1.07993 * 120.15756 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0956 1.3053 -0.4542 5 6 3.4481 2.2624 0.4620 6 1 4.0976 3.0749 0.1715 7 6 2.9649 2.1902 1.7628 8 7 2.0537 1.2969 2.0766 9 14 3.6108 3.3629 3.0655 10 1 4.6232 4.2656 2.4608 11 1 2.4876 4.1706 3.6051 12 1 4.2348 2.5852 4.1660 13 6 3.1979 1.5647 -1.7729 14 8 3.5077 2.6751 -2.1503 15 6 2.9274 0.4753 -2.7783 16 1 2.1633 -0.1972 -2.3885 17 8 2.4706 1.0578 -4.0006 18 6 4.2143 -0.3106 -3.0375 19 1 4.9944 0.3712 -3.3762 20 8 4.6327 -0.9510 -1.8305 21 6 3.9622 -1.3519 -4.0973 22 7 3.0330 -2.2609 -4.0430 23 6 3.0825 -3.0316 -5.1598 24 6 2.3358 -4.1231 -5.6113 25 6 2.6384 -4.7059 -6.8092 26 6 3.6822 -4.2249 -7.5868 27 6 4.4328 -3.1497 -7.1612 28 6 4.1396 -2.5444 -5.9467 29 7 4.6767 -1.4819 -5.2475 30 1 5.4245 -0.9301 -5.5254 31 1 2.9718 -0.7770 -0.6715 32 1 2.9714 -0.1916 1.0095 33 1 1.7161 1.2467 2.9846 34 1 3.1016 1.6690 -4.4049 35 1 4.0800 -1.7009 -1.5712 36 1 1.5207 -4.5049 -5.0145 37 1 2.0592 -5.5495 -7.1545 38 1 3.9086 -4.6964 -8.5318 39 1 5.2444 -2.7796 -7.7699 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000779754840.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:13 Heat of formation + Delta-G solvation = -8.650333 kcal Electronic energy + Delta-G solvation = -28177.576615 eV Core-core repulsion = 24087.256299 eV Total energy + Delta-G solvation = -4090.320316 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.116 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.34193 -39.67673 -37.78097 -36.74492 -36.30520 -35.36488 -34.28103 -33.30553 -31.89706 -30.50483 -30.10735 -28.52503 -27.55720 -25.63999 -23.95221 -22.54354 -22.28473 -20.98763 -19.78090 -18.34483 -17.98984 -17.64401 -17.42844 -17.01501 -16.36521 -16.06641 -15.73784 -15.12638 -14.94127 -14.51324 -14.44340 -14.19550 -14.01978 -13.44319 -13.28018 -13.13643 -13.04371 -12.70163 -12.20913 -12.01778 -11.91074 -11.73288 -11.67762 -11.54924 -11.40031 -11.20304 -10.99369 -10.86007 -10.59551 -10.44916 -10.37982 -10.15267 -9.88167 -9.31122 -8.66634 -8.52496 -8.28200 -8.09956 -6.50966 -4.09995 0.75346 1.35577 2.52610 2.62592 3.05284 3.19673 3.25177 3.40616 3.65821 3.73545 3.82697 3.99351 4.08052 4.14520 4.32819 4.55490 4.78628 4.80554 4.84052 4.89676 4.95829 4.97519 5.17783 5.22218 5.27184 5.29406 5.55429 5.58563 5.82977 5.88552 6.09213 6.21116 6.33364 6.35753 6.67812 6.69450 7.10421 7.36099 7.39887 7.68611 7.71639 7.83954 8.20696 8.75797 8.90785 9.10672 9.59944 10.51552 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.023422 B = 0.003252 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.159657 B = 8607.119365 C = 9066.086937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C 0.243 3.757 3 C 0.215 3.785 4 N -0.423 5.423 5 C -0.302 4.302 6 H 0.108 0.892 7 C 0.030 3.970 8 N -0.885 5.885 9 Si 0.936 3.064 10 H -0.267 1.267 11 H -0.282 1.282 12 H -0.278 1.278 13 C 0.431 3.569 14 O -0.573 6.573 15 C 0.077 3.923 16 H 0.120 0.880 17 O -0.532 6.532 18 C 0.168 3.832 19 H 0.121 0.879 20 O -0.525 6.525 21 C 0.266 3.734 22 N -0.475 5.475 23 C 0.051 3.949 24 C -0.061 4.061 25 C -0.131 4.131 26 C -0.103 4.103 27 C -0.112 4.112 28 C 0.049 3.951 29 N -0.589 5.589 30 H 0.423 0.577 31 H 0.079 0.921 32 H 0.144 0.856 33 H 0.275 0.725 34 H 0.377 0.623 35 H 0.387 0.613 36 H 0.130 0.870 37 H 0.128 0.872 38 H 0.128 0.872 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.109 -11.936 -14.149 20.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.152 5.152 2 C -0.076 4.076 3 C 0.088 3.912 4 N -0.142 5.142 5 C -0.430 4.430 6 H 0.126 0.874 7 C -0.172 4.172 8 N -0.525 5.525 9 Si 0.762 3.238 10 H -0.191 1.191 11 H -0.208 1.208 12 H -0.204 1.204 13 C 0.219 3.781 14 O -0.457 6.457 15 C 0.012 3.988 16 H 0.137 0.863 17 O -0.336 6.336 18 C 0.105 3.895 19 H 0.139 0.861 20 O -0.331 6.331 21 C -0.002 4.002 22 N -0.196 5.196 23 C -0.068 4.068 24 C -0.080 4.080 25 C -0.152 4.152 26 C -0.123 4.123 27 C -0.133 4.133 28 C -0.061 4.061 29 N -0.200 5.200 30 H 0.262 0.738 31 H 0.097 0.903 32 H 0.161 0.839 33 H 0.085 0.915 34 H 0.225 0.775 35 H 0.239 0.761 36 H 0.148 0.852 37 H 0.146 0.854 38 H 0.146 0.854 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 5.806 -11.487 -13.346 18.541 hybrid contribution 1.506 0.852 -0.088 1.732 sum 7.311 -10.634 -13.434 18.629 Atomic orbital electron populations 1.80907 1.13648 1.09017 1.11586 1.29393 0.95465 0.92061 0.90632 1.19080 0.81192 0.86332 1.04554 1.43497 1.54854 1.11829 1.04043 1.19842 1.27264 1.06526 0.89325 0.87428 1.25375 0.95092 0.97844 0.98924 1.69746 1.26859 1.34799 1.21074 0.85695 0.78668 0.79669 0.79722 1.19140 1.20756 1.20391 1.20452 0.84905 0.89248 0.83505 1.90552 1.52949 1.23554 1.78639 1.22466 0.96011 0.94030 0.86278 0.86261 1.86636 1.47104 1.63635 1.36213 1.21048 0.98269 0.89017 0.81161 0.86091 1.86769 1.57511 1.50158 1.38697 1.24244 0.89791 0.97680 0.88530 1.70316 1.20229 1.06400 1.22697 1.19075 0.97135 0.98433 0.92148 1.20079 0.98637 0.93254 0.96050 1.20641 0.98730 1.01058 0.94741 1.20874 0.95602 0.96005 0.99820 1.19952 1.01932 0.97778 0.93667 1.18911 0.98309 0.92408 0.96483 1.43007 1.30698 1.28119 1.18190 0.73776 0.90320 0.83904 0.91452 0.77459 0.76143 0.85191 0.85385 0.85363 0.85998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.56 18.54 42.15 0.78 -10.78 16 2 C 0.24 5.51 12.97 -20.76 -0.27 5.24 16 3 C 0.22 4.30 4.49 -6.83 -0.03 4.27 16 4 N -0.42 -9.70 2.60 -117.93 -0.31 -10.01 16 5 C -0.30 -7.64 9.33 -14.93 -0.14 -7.78 16 6 H 0.11 2.84 7.41 -52.49 -0.39 2.45 16 7 C 0.03 0.74 5.18 -17.47 -0.09 0.65 16 8 N -0.88 -21.84 8.92 55.50 0.49 -21.35 16 9 Si 0.94 19.57 29.56 -169.99 -5.02 14.54 16 10 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 11 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 12 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 13 C 0.43 9.55 6.51 -10.99 -0.07 9.48 16 14 O -0.57 -14.39 16.11 -12.67 -0.20 -14.59 16 15 C 0.08 1.35 2.57 -27.89 -0.07 1.27 16 16 H 0.12 2.20 6.06 -51.93 -0.31 1.89 16 17 O -0.53 -9.34 12.73 -53.45 -0.68 -10.02 16 18 C 0.17 2.32 3.30 -27.89 -0.09 2.23 16 19 H 0.12 1.49 8.14 -51.93 -0.42 1.07 16 20 O -0.53 -7.18 11.51 -35.23 -0.41 -7.58 16 21 C 0.27 3.54 6.42 -154.83 -0.99 2.55 16 22 N -0.48 -7.18 11.22 -8.24 -0.09 -7.27 16 23 C 0.05 0.70 7.23 -84.70 -0.61 0.09 16 24 C -0.06 -0.70 10.05 -39.61 -0.40 -1.10 16 25 C -0.13 -1.19 9.96 -39.98 -0.40 -1.58 16 26 C -0.10 -0.86 10.03 -39.52 -0.40 -1.26 16 27 C -0.11 -1.05 10.07 -39.50 -0.40 -1.45 16 28 C 0.05 0.59 7.31 -83.99 -0.61 -0.03 16 29 N -0.59 -6.40 6.23 -8.00 -0.05 -6.45 16 30 H 0.42 3.17 8.96 -40.82 -0.37 2.81 16 31 H 0.08 1.25 3.49 -51.93 -0.18 1.06 16 32 H 0.14 2.94 6.18 -51.93 -0.32 2.62 16 33 H 0.27 6.57 8.31 -40.82 -0.34 6.24 16 34 H 0.38 5.48 8.63 45.56 0.39 5.88 16 35 H 0.39 4.43 7.36 45.56 0.34 4.76 16 36 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 37 H 0.13 0.82 8.06 -52.48 -0.42 0.39 16 38 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 39 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 LS Contribution 340.89 15.07 5.14 5.14 Total: -1.00 -34.06 340.89 -7.02 -41.08 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -2.09 Total: 14.71 kcal Atomic # 6 Polarization: 17.16 SS G_CDS: -4.58 Total: 12.58 kcal Atomic # 7 Polarization: -56.68 SS G_CDS: 0.83 Total: -55.86 kcal Atomic # 8 Polarization: -30.91 SS G_CDS: -1.29 Total: -32.20 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.02 Total: 14.54 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.06 -7.02 -41.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779754840.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.429 kcal (2) G-P(sol) polarization free energy of solvation -34.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds