Wall clock time and date at job start Tue Mar 31 2020 05:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47321 * 71.97426 * 3 2 1 5 5 C 1.37093 * 120.00132 * 92.99704 * 4 3 2 6 6 H 1.08002 * 119.99862 * 161.21560 * 5 4 3 7 7 C 1.38943 * 120.00342 * 341.21617 * 5 4 3 8 8 N 1.31414 * 120.00162 * 339.80696 * 7 5 4 9 9 Si 1.86803 * 120.00469 * 159.80094 * 7 5 4 10 10 H 1.48498 * 109.46906 * 90.00055 * 9 7 5 11 11 H 1.48496 * 109.47504 * 210.00223 * 9 7 5 12 12 H 1.48501 * 109.47020 * 330.00315 * 9 7 5 13 13 C 1.34775 * 119.99823 * 272.99891 * 4 3 2 14 14 O 1.21296 * 120.00198 * 175.64976 * 13 4 3 15 15 C 1.50705 * 120.00042 * 355.92748 * 13 4 3 16 16 H 1.08995 * 109.47091 * 322.00037 * 15 13 4 17 17 O 1.42895 * 109.47175 * 202.00072 * 15 13 4 18 18 C 1.52999 * 109.46993 * 81.99931 * 15 13 4 19 19 H 1.09002 * 109.47318 * 297.81157 * 18 15 13 20 20 O 1.42900 * 109.46850 * 57.81238 * 18 15 13 21 21 C 1.50705 * 109.47094 * 177.81127 * 18 15 13 22 22 N 1.30115 * 124.94631 * 304.69750 * 21 18 15 23 23 C 1.35786 * 109.63863 * 179.89255 * 22 21 18 24 24 C 1.39736 * 133.59907 * 180.13440 * 23 22 21 25 25 C 1.36606 * 119.88793 * 180.29607 * 24 23 22 26 26 C 1.38777 * 120.66465 * 359.95744 * 25 24 23 27 27 C 1.37856 * 120.45584 * 0.02562 * 26 25 24 28 28 C 1.38828 * 119.68483 * 359.97438 * 27 26 25 29 29 N 1.36032 * 124.95159 * 125.00145 * 21 18 15 30 30 H 0.96999 * 126.35030 * 359.94518 * 29 21 18 31 31 H 1.08998 * 109.46976 * 311.97045 * 3 2 1 32 32 H 1.09004 * 109.46715 * 191.96966 * 3 2 1 33 33 H 0.96991 * 120.00419 * 179.97438 * 8 7 5 34 34 H 0.96702 * 114.00353 * 300.00041 * 17 15 13 35 35 H 0.96702 * 114.00600 * 60.00128 * 20 18 15 36 36 H 1.08001 * 120.05785 * 0.27287 * 24 23 22 37 37 H 1.07994 * 119.66664 * 179.97438 * 25 24 23 38 38 H 1.08001 * 119.77065 * 180.02562 * 26 25 24 39 39 H 1.07999 * 120.15356 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0966 -0.4265 -1.3134 5 6 3.3832 0.5075 -2.2751 6 1 4.0137 0.2450 -3.1118 7 6 2.8625 1.7916 -2.1736 8 7 1.8105 2.0164 -1.4187 9 14 3.6578 3.1988 -3.1100 10 1 3.0305 3.3183 -4.4507 11 1 3.4649 4.4650 -2.3586 12 1 5.1103 2.9317 -3.2652 13 6 3.2642 -1.7377 -1.5762 14 8 3.5927 -2.0965 -2.6873 15 6 3.0374 -2.7587 -0.4911 16 1 3.4042 -2.3679 0.4579 17 8 3.7388 -3.9610 -0.8142 18 6 1.5411 -3.0565 -0.3758 19 1 1.0106 -2.1478 -0.0913 20 8 1.0495 -3.5207 -1.6347 21 6 1.3192 -4.1167 0.6720 22 7 1.8841 -5.2888 0.6777 23 6 1.4663 -5.9915 1.7619 24 6 1.7492 -7.2703 2.2489 25 6 1.1508 -7.7098 3.3956 26 6 0.2622 -6.8979 4.0862 27 6 -0.0317 -5.6326 3.6246 28 6 0.5669 -5.1690 2.4610 29 7 0.4946 -3.9899 1.7465 30 1 -0.0440 -3.2147 1.9696 31 1 2.9716 -0.6864 0.7641 32 1 2.9708 1.0062 0.2131 33 1 1.4473 2.9129 -1.3475 34 1 3.4633 -4.3652 -1.6484 35 1 1.4775 -4.3282 -1.9507 36 1 2.4396 -7.9103 1.7195 37 1 1.3718 -8.6989 3.7686 38 1 -0.2024 -7.2599 4.9915 39 1 -0.7238 -5.0047 4.1661 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000779754843.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:24 Heat of formation + Delta-G solvation = -6.712234 kcal Electronic energy + Delta-G solvation = -28381.834179 eV Core-core repulsion = 24291.597905 eV Total energy + Delta-G solvation = -4090.236274 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.116 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.25390 -39.73331 -37.78185 -36.90978 -36.06084 -35.05656 -34.40364 -33.19575 -32.11170 -30.58564 -30.02606 -28.64149 -27.58836 -25.67144 -23.91886 -22.47005 -22.11819 -20.84890 -19.81893 -18.18494 -18.13003 -17.62056 -17.24970 -17.22716 -16.54262 -16.12357 -15.36301 -15.29096 -14.85945 -14.48202 -14.39977 -14.13269 -13.99298 -13.93842 -13.35591 -12.93913 -12.86393 -12.73331 -12.19424 -12.14336 -11.94007 -11.79386 -11.65296 -11.55494 -11.24701 -11.18477 -11.01085 -10.76442 -10.68701 -10.49148 -10.47452 -10.12107 -9.85560 -9.39192 -8.65777 -8.45956 -8.21043 -8.18516 -6.61683 -4.12708 0.81423 1.41327 2.63276 2.69141 3.03257 3.16223 3.20700 3.34746 3.57391 3.72884 3.78446 3.89312 4.03827 4.35602 4.40443 4.56187 4.63315 4.72037 4.76197 4.86152 4.95705 5.08258 5.15828 5.24108 5.32452 5.35187 5.39051 5.59762 5.72246 5.87635 5.93821 6.27507 6.28936 6.37802 6.42403 6.75729 7.18681 7.36479 7.50977 7.67711 7.82293 7.89763 8.13962 8.52260 8.85583 9.04026 9.54093 10.43989 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.023954 B = 0.003406 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.603558 B = 8219.773053 C = 8943.452770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C 0.243 3.757 3 C 0.213 3.787 4 N -0.436 5.436 5 C -0.312 4.312 6 H 0.110 0.890 7 C 0.033 3.967 8 N -0.878 5.878 9 Si 0.930 3.070 10 H -0.277 1.277 11 H -0.282 1.282 12 H -0.267 1.267 13 C 0.437 3.563 14 O -0.555 6.555 15 C 0.072 3.928 16 H 0.118 0.882 17 O -0.518 6.518 18 C 0.157 3.843 19 H 0.124 0.876 20 O -0.525 6.525 21 C 0.258 3.742 22 N -0.455 5.455 23 C 0.046 3.954 24 C -0.060 4.060 25 C -0.133 4.133 26 C -0.104 4.104 27 C -0.112 4.112 28 C 0.048 3.952 29 N -0.591 5.591 30 H 0.424 0.576 31 H 0.082 0.918 32 H 0.129 0.871 33 H 0.275 0.725 34 H 0.378 0.622 35 H 0.382 0.618 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.128 0.872 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.919 -11.489 12.280 16.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.143 5.143 2 C -0.075 4.075 3 C 0.086 3.914 4 N -0.157 5.157 5 C -0.439 4.439 6 H 0.128 0.872 7 C -0.170 4.170 8 N -0.516 5.516 9 Si 0.756 3.244 10 H -0.203 1.203 11 H -0.207 1.207 12 H -0.191 1.191 13 C 0.224 3.776 14 O -0.436 6.436 15 C 0.007 3.993 16 H 0.135 0.865 17 O -0.322 6.322 18 C 0.094 3.906 19 H 0.142 0.858 20 O -0.329 6.329 21 C -0.010 4.010 22 N -0.176 5.176 23 C -0.073 4.073 24 C -0.079 4.079 25 C -0.153 4.153 26 C -0.124 4.124 27 C -0.133 4.133 28 C -0.063 4.063 29 N -0.202 5.202 30 H 0.263 0.737 31 H 0.100 0.900 32 H 0.147 0.853 33 H 0.086 0.914 34 H 0.227 0.773 35 H 0.231 0.769 36 H 0.147 0.853 37 H 0.145 0.855 38 H 0.146 0.854 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.000 -11.202 11.716 16.333 hybrid contribution -0.311 1.233 -0.151 1.280 sum -2.310 -9.970 11.566 15.443 Atomic orbital electron populations 1.80943 1.13212 1.11137 1.09055 1.29168 0.95342 0.90802 0.92184 1.18807 0.81953 1.03990 0.86689 1.43634 1.56514 1.04604 1.10974 1.19735 1.29017 0.89362 1.05819 0.87244 1.25309 0.94580 0.99393 0.97753 1.69720 1.18730 1.23035 1.40162 0.85856 0.79841 0.79446 0.79223 1.20279 1.20690 1.19118 1.20453 0.84618 0.83076 0.89422 1.90562 1.51174 1.78884 1.23016 1.22418 0.90266 0.87261 0.99308 0.86483 1.86638 1.63637 1.37117 1.44821 1.21187 0.96094 0.92567 0.80743 0.85846 1.86764 1.64913 1.47667 1.33555 1.24321 0.90693 0.95882 0.90103 1.70470 1.24069 1.02684 1.20402 1.19192 0.98526 0.95805 0.93809 1.20045 0.99424 0.92642 0.95828 1.20629 0.98609 1.00286 0.95806 1.20861 0.98474 0.93142 0.99917 1.19970 1.01822 0.97037 0.94444 1.18947 1.02423 0.87927 0.97002 1.43116 1.39510 1.15263 1.22325 0.73704 0.89990 0.85316 0.91408 0.77313 0.76917 0.85265 0.85458 0.85405 0.86002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -10.02 18.18 42.15 0.77 -9.26 16 2 C 0.24 4.91 10.56 -20.76 -0.22 4.69 16 3 C 0.21 3.93 4.91 -6.83 -0.03 3.90 16 4 N -0.44 -9.67 2.59 -117.93 -0.31 -9.98 16 5 C -0.31 -7.76 9.29 -14.94 -0.14 -7.90 16 6 H 0.11 2.88 7.43 -52.49 -0.39 2.49 16 7 C 0.03 0.79 4.90 -17.47 -0.09 0.71 16 8 N -0.88 -21.19 9.28 55.50 0.52 -20.68 16 9 Si 0.93 19.06 29.60 -169.99 -5.03 14.02 16 10 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 11 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 12 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 13 C 0.44 9.48 6.43 -10.98 -0.07 9.41 16 14 O -0.55 -13.89 16.03 -13.30 -0.21 -14.11 16 15 C 0.07 1.24 2.53 -27.88 -0.07 1.17 16 16 H 0.12 1.77 6.34 -51.93 -0.33 1.44 16 17 O -0.52 -8.81 11.80 -60.03 -0.71 -9.52 16 18 C 0.16 2.60 3.32 -27.88 -0.09 2.51 16 19 H 0.12 2.15 4.46 -51.93 -0.23 1.92 16 20 O -0.52 -9.35 12.87 -42.90 -0.55 -9.90 16 21 C 0.26 3.96 6.95 -154.82 -1.08 2.88 16 22 N -0.46 -7.25 10.08 -8.23 -0.08 -7.34 16 23 C 0.05 0.67 7.23 -84.70 -0.61 0.06 16 24 C -0.06 -0.71 10.05 -39.61 -0.40 -1.11 16 25 C -0.13 -1.25 9.96 -39.97 -0.40 -1.65 16 26 C -0.10 -0.94 10.03 -39.52 -0.40 -1.34 16 27 C -0.11 -1.18 10.07 -39.50 -0.40 -1.57 16 28 C 0.05 0.63 7.31 -83.99 -0.61 0.02 16 29 N -0.59 -7.86 6.23 -8.00 -0.05 -7.91 16 30 H 0.42 4.73 8.96 -40.82 -0.37 4.37 16 31 H 0.08 1.13 5.99 -51.93 -0.31 0.82 16 32 H 0.13 2.40 6.70 -51.93 -0.35 2.05 16 33 H 0.28 6.47 8.31 -40.82 -0.34 6.14 16 34 H 0.38 5.84 7.33 45.56 0.33 6.17 16 35 H 0.38 5.62 7.73 45.56 0.35 5.97 16 36 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 37 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 38 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 39 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 LS Contribution 337.01 15.07 5.08 5.08 Total: -1.00 -32.59 337.01 -7.30 -39.89 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: -2.12 Total: 17.94 kcal Atomic # 6 Polarization: 16.37 SS G_CDS: -4.60 Total: 11.76 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: 0.84 Total: -55.16 kcal Atomic # 8 Polarization: -32.06 SS G_CDS: -1.47 Total: -33.53 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.03 Total: 14.02 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.59 -7.30 -39.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779754843.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.175 kcal (2) G-P(sol) polarization free energy of solvation -32.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds