Wall clock time and date at job start Tue Mar 31 2020 05:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.53004 * 109.46941 * 97.28533 * 3 2 1 5 5 N 1.46495 * 109.46986 * 179.97438 * 4 3 2 6 6 C 1.46496 * 120.00628 * 270.00225 * 5 4 3 7 7 C 1.50699 * 109.47598 * 270.00465 * 6 5 4 8 8 H 1.08005 * 119.99628 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00538 * 179.97438 * 7 6 5 10 10 N 1.31507 * 120.00182 * 179.97438 * 9 7 6 11 11 Si 1.86802 * 119.99668 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47170 * 89.99666 * 11 9 7 13 13 H 1.48495 * 109.46883 * 209.99839 * 11 9 7 14 14 H 1.48496 * 109.47123 * 329.99923 * 11 9 7 15 15 C 1.34774 * 119.99828 * 90.00387 * 5 4 3 16 16 O 1.21279 * 120.00472 * 179.97438 * 15 5 4 17 17 C 1.50706 * 120.00020 * 0.02562 * 15 5 4 18 18 O 1.45194 * 109.47090 * 179.97438 * 17 15 5 19 19 C 1.34768 * 116.99748 * 179.97438 * 18 17 15 20 20 O 1.21530 * 120.00214 * 0.02562 * 19 18 17 21 21 C 1.47232 * 119.99928 * 179.97438 * 19 18 17 22 22 C 1.38204 * 126.47993 * 0.03258 * 21 19 18 23 23 N 1.34387 * 108.37770 * 179.97438 * 22 21 19 24 24 H 0.97003 * 125.37949 * 179.97438 * 23 22 21 25 25 C 1.37712 * 109.24496 * 359.97438 * 23 22 21 26 26 C 1.43202 * 125.83540 * 180.02562 * 25 23 22 27 27 N 9.59963 * 110.46139 * 124.88911 * 15 1 2 28 28 C 1.36330 * 108.33253 * 359.76345 * 25 23 22 29 29 H 1.08996 * 109.47200 * 337.28824 * 3 2 1 30 30 H 1.08997 * 109.46603 * 217.28607 * 3 2 1 31 31 H 1.09004 * 109.46898 * 59.99831 * 4 3 2 32 32 H 1.08993 * 109.47182 * 300.00170 * 4 3 2 33 33 H 1.09008 * 109.47096 * 29.99824 * 6 5 4 34 34 H 1.09003 * 109.47776 * 149.99700 * 6 5 4 35 35 H 0.97002 * 119.99991 * 180.02562 * 10 9 7 36 36 H 1.09001 * 109.46953 * 299.99667 * 17 15 5 37 37 H 1.09000 * 109.47318 * 59.99264 * 17 15 5 38 38 H 1.08002 * 125.80783 * 359.97438 * 22 21 19 39 39 H 1.07998 * 126.50111 * 180.23229 * 28 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1180 0.1838 -1.4309 5 7 4.5829 0.1851 -1.4308 6 6 5.3145 1.4441 -1.2701 7 6 5.5652 2.0560 -2.6242 8 1 5.2150 1.5567 -3.5156 9 6 6.2416 3.2532 -2.7254 10 7 6.4607 3.7868 -3.9071 11 14 6.8479 4.1164 -1.1837 12 1 8.2217 3.6521 -0.8643 13 1 6.8616 5.5838 -1.4110 14 1 5.9423 3.7995 -0.0503 15 6 5.2578 -0.9721 -1.5787 16 8 6.4706 -0.9711 -1.5792 17 6 4.5054 -2.2673 -1.7447 18 8 5.4498 -3.3611 -1.8850 19 6 4.9357 -4.5969 -2.0429 20 8 3.7310 -4.7558 -2.0632 21 6 5.8335 -5.7542 -2.1919 22 6 7.2153 -5.7279 -2.1890 23 7 7.6633 -6.9847 -2.3500 24 1 8.5962 -7.2483 -2.3845 25 6 6.5888 -7.8392 -2.4584 26 6 6.6609 -9.2579 -2.6393 27 7 6.7118 -10.3831 -2.7921 28 6 5.4448 -7.1045 -2.3582 29 1 2.9719 -0.9471 0.3968 30 1 2.9710 0.8185 0.6226 31 1 2.7542 1.1316 -1.8277 32 1 2.7550 -0.6339 -2.0534 33 1 4.7248 2.1321 -0.6641 34 1 6.2670 1.2506 -0.7768 35 1 6.9369 4.6289 -3.9783 36 1 3.8785 -2.4381 -0.8695 37 1 3.8789 -2.2121 -2.6350 38 1 7.8303 -4.8473 -2.0765 39 1 4.4336 -7.4812 -2.4006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000786907239.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:40 Heat of formation + Delta-G solvation = -4.640984 kcal Electronic energy + Delta-G solvation = -26194.962966 eV Core-core repulsion = 22104.816509 eV Total energy + Delta-G solvation = -4090.146458 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.116 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.99218 -40.29064 -39.17200 -36.98168 -36.90439 -36.30193 -35.38084 -32.89483 -32.10802 -31.11562 -30.57043 -29.43167 -27.26008 -24.28544 -24.02093 -23.01297 -22.30362 -20.57181 -20.05122 -18.85441 -17.85313 -17.51877 -16.93126 -16.67184 -16.57173 -16.29871 -15.96946 -15.41947 -15.26442 -14.79443 -14.65549 -14.63243 -14.07328 -13.77024 -13.58534 -13.49993 -13.39384 -13.17807 -12.82653 -12.76205 -12.67000 -12.54680 -12.46637 -12.27924 -11.88171 -11.66279 -11.15268 -11.05962 -10.74814 -10.67691 -10.62175 -10.27799 -9.74696 -9.65968 -9.27740 -8.91561 -8.67698 -8.05580 -6.16872 -4.17311 0.87792 1.21138 1.75835 2.34501 2.64297 2.66054 2.75787 2.82713 3.00866 3.08580 3.22641 3.27746 3.30690 3.44584 3.62168 4.05944 4.31188 4.42082 4.61318 4.69354 4.76220 4.85249 4.94686 5.06153 5.11568 5.16739 5.25920 5.36757 5.41428 5.66345 5.91673 5.94868 6.05648 6.27803 6.49993 6.59665 6.76766 6.94798 7.04540 7.48148 7.51781 7.70171 7.89906 8.34403 8.63810 8.86657 9.41796 10.96178 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.012216 B = 0.002689 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2291.433667 B =10408.916256 C =12245.954495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C 0.214 3.786 3 C -0.051 4.051 4 C 0.111 3.889 5 N -0.587 5.587 6 C 0.216 3.784 7 C -0.534 4.534 8 H 0.077 0.923 9 C 0.074 3.926 10 N -0.894 5.894 11 Si 0.875 3.125 12 H -0.273 1.273 13 H -0.285 1.285 14 H -0.265 1.265 15 C 0.513 3.487 16 O -0.510 6.510 17 C 0.049 3.951 18 O -0.328 6.328 19 C 0.539 3.461 20 O -0.512 6.512 21 C -0.216 4.216 22 C 0.124 3.876 23 N -0.519 5.519 24 H 0.430 0.570 25 C 0.041 3.959 26 C 0.280 3.720 27 N -0.403 5.403 28 C -0.042 4.042 29 H 0.107 0.893 30 H 0.118 0.882 31 H 0.102 0.898 32 H 0.080 0.920 33 H 0.036 0.964 34 H 0.042 0.958 35 H 0.266 0.734 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.203 0.797 39 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.674 -17.211 6.687 18.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.116 5.116 2 C -0.104 4.104 3 C -0.092 4.092 4 C -0.015 4.015 5 N -0.320 5.320 6 C 0.097 3.903 7 C -0.573 4.573 8 H 0.095 0.905 9 C -0.129 4.129 10 N -0.532 5.532 11 Si 0.702 3.298 12 H -0.199 1.199 13 H -0.211 1.211 14 H -0.189 1.189 15 C 0.298 3.702 16 O -0.384 6.384 17 C -0.028 4.028 18 O -0.243 6.243 19 C 0.384 3.616 20 O -0.401 6.401 21 C -0.224 4.224 22 C -0.019 4.019 23 N -0.113 5.113 24 H 0.269 0.731 25 C -0.069 4.069 26 C -0.036 4.036 27 N -0.080 5.080 28 C -0.070 4.070 29 H 0.125 0.875 30 H 0.136 0.864 31 H 0.120 0.880 32 H 0.099 0.901 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.115 0.885 37 H 0.118 0.882 38 H 0.220 0.780 39 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -0.394 -18.886 6.339 19.925 hybrid contribution 1.009 1.030 0.659 1.586 sum 0.615 -17.855 6.998 19.187 Atomic orbital electron populations 1.81230 1.12992 1.09071 1.08331 1.28989 0.95005 0.93027 0.93359 1.19879 0.81682 1.06155 1.01529 1.21438 0.81401 1.05289 0.93324 1.47798 1.05135 1.07792 1.71298 1.19782 0.92597 0.79541 0.98409 1.21288 1.37538 1.06199 0.92231 0.90540 1.24854 0.95179 0.96930 0.95957 1.69886 1.41089 1.19275 1.22927 0.86874 0.80157 0.79080 0.83688 1.19876 1.21113 1.18934 1.19758 0.88125 0.84086 0.78255 1.90724 1.13305 1.86135 1.48273 1.22925 0.91124 0.84371 1.04369 1.86580 1.39642 1.15150 1.82910 1.20078 0.86608 0.82233 0.72727 1.90861 1.15768 1.86022 1.47435 1.18583 0.91862 0.91801 1.20140 1.22920 0.94964 0.87266 0.96743 1.41687 1.09066 1.06356 1.54229 0.73100 1.15090 0.87789 0.83538 1.20531 1.24245 0.95134 0.90825 0.93383 1.81375 1.05145 1.11215 1.10217 1.21060 0.97677 0.90312 0.97905 0.87481 0.86449 0.87980 0.90137 0.94614 0.94041 0.92447 0.88514 0.88158 0.78034 0.81850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.19 18.54 42.16 0.78 -5.41 16 2 C 0.21 2.38 15.43 -20.76 -0.32 2.06 16 3 C -0.05 -0.45 6.03 -29.51 -0.18 -0.63 16 4 C 0.11 1.30 5.17 -4.04 -0.02 1.28 16 5 N -0.59 -9.54 2.46 -175.06 -0.43 -9.97 16 6 C 0.22 4.44 4.23 -5.20 -0.02 4.42 16 7 C -0.53 -13.76 9.94 -34.44 -0.34 -14.11 16 8 H 0.08 2.19 8.06 -52.48 -0.42 1.76 16 9 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 10 N -0.89 -25.96 13.96 55.43 0.77 -25.19 16 11 Si 0.88 19.72 27.47 -169.99 -4.67 15.05 16 12 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 13 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 14 H -0.26 -5.45 6.54 56.52 0.37 -5.08 16 15 C 0.51 8.52 7.75 -10.98 -0.09 8.43 16 16 O -0.51 -10.69 16.08 -14.10 -0.23 -10.92 16 17 C 0.05 0.62 4.51 36.01 0.16 0.78 16 18 O -0.33 -4.24 9.59 -47.36 -0.45 -4.70 16 19 C 0.54 6.35 7.95 34.38 0.27 6.62 16 20 O -0.51 -7.07 16.71 -19.29 -0.32 -7.39 16 21 C -0.22 -1.90 6.13 -105.02 -0.64 -2.54 16 22 C 0.12 0.72 11.76 -16.45 -0.19 0.53 16 23 N -0.52 -2.19 6.01 -10.28 -0.06 -2.25 16 24 H 0.43 0.47 8.96 -40.82 -0.37 0.10 16 25 C 0.04 0.26 6.90 -83.98 -0.58 -0.32 16 26 C 0.28 2.21 15.88 -22.45 -0.36 1.85 16 27 N -0.40 -4.13 18.54 41.86 0.78 -3.36 16 28 C -0.04 -0.32 10.59 -39.03 -0.41 -0.73 16 29 H 0.11 0.72 7.22 -51.93 -0.38 0.35 16 30 H 0.12 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.10 1.29 8.07 -51.93 -0.42 0.87 16 32 H 0.08 0.79 6.44 -51.93 -0.33 0.46 16 33 H 0.04 0.67 7.13 -51.92 -0.37 0.30 16 34 H 0.04 0.91 6.85 -51.93 -0.36 0.56 16 35 H 0.27 7.23 8.31 -40.82 -0.34 6.90 16 36 H 0.10 0.94 7.18 -51.93 -0.37 0.57 16 37 H 0.10 1.16 7.40 -51.93 -0.38 0.77 16 38 H 0.20 0.84 8.06 -52.49 -0.42 0.42 16 39 H 0.16 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 367.72 15.07 5.54 5.54 Total: -1.00 -36.75 367.72 -4.94 -41.69 By element: Atomic # 1 Polarization: 1.18 SS G_CDS: -3.84 Total: -2.66 kcal Atomic # 6 Polarization: 12.36 SS G_CDS: -2.82 Total: 9.55 kcal Atomic # 7 Polarization: -48.01 SS G_CDS: 1.84 Total: -46.17 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -1.00 Total: -23.01 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -4.67 Total: 15.05 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.75 -4.94 -41.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786907239.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.049 kcal (2) G-P(sol) polarization free energy of solvation -36.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds