Wall clock time and date at job start Tue Mar 31 2020 06:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34608 * 125.74238 * 2 1 4 4 N 1.30848 * 107.63447 * 180.02562 * 3 2 1 5 5 C 1.34581 * 107.27223 * 0.02562 * 4 3 2 6 6 C 1.47753 * 126.05399 * 180.02562 * 5 4 3 7 7 O 1.21470 * 119.99803 * 180.02562 * 6 5 4 8 8 O 1.34719 * 119.99768 * 0.02562 * 6 5 4 9 9 C 1.45195 * 116.99585 * 185.07097 * 8 6 5 10 10 C 1.50703 * 109.47079 * 184.91989 * 9 8 6 11 11 O 1.21281 * 119.99686 * 4.98585 * 10 9 8 12 12 N 1.34776 * 120.00145 * 184.98872 * 10 9 8 13 13 C 1.37137 * 119.99868 * 3.75663 * 12 10 9 14 14 H 1.07994 * 120.00281 * 308.20389 * 13 12 10 15 15 C 1.38896 * 119.99693 * 128.20920 * 13 12 10 16 16 N 1.31420 * 119.99904 * 173.08944 * 15 13 12 17 17 Si 1.86800 * 120.00184 * 353.08863 * 15 13 12 18 18 H 1.48495 * 109.46986 * 95.34526 * 17 15 13 19 19 H 1.48501 * 109.46978 * 215.34490 * 17 15 13 20 20 H 1.48503 * 109.46854 * 335.34601 * 17 15 13 21 21 C 1.39793 * 119.99957 * 183.75770 * 12 10 9 22 22 C 1.38956 * 120.07833 * 171.69853 * 21 12 10 23 23 C 1.38079 * 119.92437 * 179.97438 * 22 21 12 24 24 C 1.38309 * 120.07570 * 359.97438 * 23 22 21 25 25 C 1.38311 * 120.15626 * 0.04297 * 24 23 22 26 26 C 1.38079 * 120.07712 * 359.95511 * 25 24 23 27 27 N 1.28842 * 125.74962 * 180.34429 * 2 1 3 28 28 H 1.09007 * 109.47281 * 89.99760 * 1 2 3 29 29 H 1.09004 * 109.46985 * 209.99662 * 1 2 3 30 30 H 1.08998 * 109.47525 * 329.99796 * 1 2 3 31 31 H 1.08005 * 126.18253 * 0.02643 * 3 2 1 32 32 H 1.08999 * 109.47376 * 64.92493 * 9 8 6 33 33 H 1.08994 * 109.47586 * 304.91824 * 9 8 6 34 34 H 0.96993 * 120.00130 * 179.97438 * 16 15 13 35 35 H 1.08006 * 120.03706 * 359.69572 * 22 21 12 36 36 H 1.07997 * 119.96308 * 179.97438 * 23 22 21 37 37 H 1.08003 * 119.91908 * 180.02562 * 24 23 22 38 38 H 1.08002 * 119.95763 * 179.97438 * 25 24 23 39 39 H 1.08001 * 120.03861 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2513 1.0925 0.0000 4 7 3.4950 0.6859 -0.0006 5 6 3.4753 -0.6598 -0.0015 6 6 4.6571 -1.5467 -0.0018 7 8 4.5113 -2.7526 -0.0031 8 8 5.8961 -1.0179 -0.0007 9 6 7.0082 -1.9443 -0.1154 10 6 8.3060 -1.1911 0.0246 11 8 8.2947 -0.0085 0.2933 12 7 9.4790 -1.8316 -0.1488 13 6 9.4912 -3.1494 -0.5281 14 1 8.9109 -3.8752 0.0223 15 6 10.2498 -3.5508 -1.6202 16 7 10.3708 -4.8287 -1.9022 17 14 11.0981 -2.2743 -2.6880 18 1 12.5016 -2.1031 -2.2343 19 1 11.0866 -2.7258 -4.1027 20 1 10.3802 -0.9791 -2.5759 21 6 10.6834 -1.1527 0.0580 22 6 11.8858 -1.8491 0.0494 23 6 13.0736 -1.1752 0.2535 24 6 13.0675 0.1915 0.4657 25 6 11.8725 0.8879 0.4752 26 6 10.6810 0.2204 0.2718 27 7 2.2177 -1.0456 -0.0063 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3634 0.8899 0.5138 31 1 1.9162 2.1193 0.0004 32 1 6.9751 -2.4330 -1.0892 33 1 6.9377 -2.6959 0.6708 34 1 10.9002 -5.1089 -2.6650 35 1 11.8910 -2.9170 -0.1122 36 1 14.0085 -1.7159 0.2474 37 1 13.9980 0.7162 0.6246 38 1 11.8714 1.9550 0.6417 39 1 9.7482 0.7648 0.2790 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000811356317.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:55 Heat of formation + Delta-G solvation = 46.748138 kcal Electronic energy + Delta-G solvation = -27313.538986 eV Core-core repulsion = 23225.620928 eV Total energy + Delta-G solvation = -4087.918058 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.116 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.68683 -40.36578 -39.72733 -37.57726 -36.11011 -35.16828 -34.87641 -32.28070 -32.03971 -30.16357 -30.01274 -28.63142 -27.33026 -25.31022 -24.43733 -22.69204 -22.02434 -21.41123 -20.73439 -19.55602 -18.37744 -18.24307 -17.14226 -16.98001 -16.48493 -16.27021 -16.01812 -15.73014 -15.46477 -15.04734 -14.54052 -14.11493 -13.81966 -13.67134 -13.65415 -13.33093 -12.95267 -12.84570 -12.69731 -12.46810 -12.18855 -12.02444 -11.94993 -11.37253 -11.00620 -10.73389 -10.69700 -10.67480 -10.62645 -10.37870 -10.30638 -10.13812 -9.83685 -9.53367 -8.99078 -8.45322 -8.04366 -7.13916 -6.61892 -4.55425 1.06984 1.75839 1.84417 2.00873 2.16778 2.54921 3.12559 3.13480 3.22894 3.32438 3.42363 3.82679 3.99431 4.06216 4.22910 4.55071 4.55232 4.59977 4.82746 4.83818 4.93647 5.33591 5.58655 5.61591 5.68992 5.72944 5.84259 5.89873 6.05413 6.18544 6.28750 6.37957 6.49605 6.52862 6.79199 7.14702 7.22291 7.28321 7.34153 7.60497 7.68597 7.90555 7.95930 8.13626 8.68809 8.98778 9.25211 10.41002 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.018493 B = 0.003114 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.763290 B = 8990.480924 C = 9997.036851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.304 5.304 3 C 0.189 3.811 4 N -0.456 5.456 5 C 0.166 3.834 6 C 0.566 3.434 7 O -0.481 6.481 8 O -0.313 6.313 9 C 0.070 3.930 10 C 0.500 3.500 11 O -0.535 6.535 12 N -0.401 5.401 13 C -0.381 4.381 14 H 0.113 0.887 15 C 0.087 3.913 16 N -0.851 5.851 17 Si 0.868 3.132 18 H -0.250 1.250 19 H -0.286 1.286 20 H -0.258 1.258 21 C 0.156 3.844 22 C -0.151 4.151 23 C -0.107 4.107 24 C -0.168 4.168 25 C -0.110 4.110 26 C -0.182 4.182 27 N -0.244 5.244 28 H 0.092 0.908 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.230 0.770 32 H 0.113 0.887 33 H 0.104 0.896 34 H 0.281 0.719 35 H 0.140 0.860 36 H 0.114 0.886 37 H 0.109 0.891 38 H 0.113 0.887 39 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.470 10.156 2.432 17.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.101 5.101 3 C -0.107 4.107 4 N -0.180 5.180 5 C -0.111 4.111 6 C 0.405 3.595 7 O -0.365 6.365 8 O -0.226 6.226 9 C -0.006 4.006 10 C 0.290 3.710 11 O -0.417 6.417 12 N -0.112 5.112 13 C -0.506 4.506 14 H 0.130 0.870 15 C -0.124 4.124 16 N -0.483 5.483 17 Si 0.693 3.307 18 H -0.175 1.175 19 H -0.213 1.213 20 H -0.182 1.182 21 C 0.060 3.940 22 C -0.172 4.172 23 C -0.126 4.126 24 C -0.188 4.188 25 C -0.129 4.129 26 C -0.202 4.202 27 N -0.086 5.086 28 H 0.110 0.890 29 H 0.119 0.881 30 H 0.122 0.878 31 H 0.246 0.754 32 H 0.131 0.869 33 H 0.122 0.878 34 H 0.091 0.909 35 H 0.158 0.842 36 H 0.132 0.868 37 H 0.127 0.873 38 H 0.131 0.869 39 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -14.343 9.640 2.439 17.452 hybrid contribution 0.347 0.364 -0.688 0.852 sum -13.995 10.004 1.751 17.292 Atomic orbital electron populations 1.22283 0.71980 1.06101 1.05141 1.47477 1.09394 1.03804 1.49418 1.26689 0.85637 0.96094 1.02286 1.71485 1.19790 1.09026 1.17727 1.22250 0.90161 0.89152 1.09510 1.18703 0.82115 0.84781 0.73930 1.90916 1.86658 1.14387 1.44530 1.86575 1.13240 1.40243 1.82530 1.22731 0.81674 0.90292 1.05927 1.20121 0.85034 0.86451 0.79348 1.90278 1.86276 1.15269 1.49841 1.41211 1.01419 1.11381 1.57189 1.19119 1.35545 0.81506 1.14473 0.86958 1.25448 0.95274 0.96094 0.95620 1.69659 1.36648 1.14487 1.27496 0.87010 0.82062 0.82286 0.79347 1.17484 1.21328 1.18189 1.18422 0.86828 0.91681 0.97094 1.21083 0.90975 1.01438 1.03671 1.20820 0.97124 0.94360 1.00272 1.20938 0.97550 0.94570 1.05714 1.21016 0.92447 0.99088 1.00312 1.22786 1.01513 0.93572 1.02318 1.74339 1.02325 1.13335 1.18579 0.88979 0.88075 0.87789 0.75362 0.86895 0.87814 0.90854 0.84186 0.86808 0.87318 0.86854 0.80406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.25 11.38 59.85 0.68 0.93 16 2 N -0.30 -2.78 3.72 -69.39 -0.26 -3.04 16 3 C 0.19 1.73 12.62 -90.48 -1.14 0.58 16 4 N -0.46 -6.81 11.42 -12.38 -0.14 -6.96 16 5 C 0.17 2.77 7.99 -156.34 -1.25 1.52 16 6 C 0.57 10.78 7.97 34.62 0.28 11.06 16 7 O -0.48 -9.83 16.78 -19.24 -0.32 -10.15 16 8 O -0.31 -6.39 9.77 -47.21 -0.46 -6.85 16 9 C 0.07 1.45 4.87 36.01 0.18 1.62 16 10 C 0.50 11.69 7.65 -10.98 -0.08 11.61 16 11 O -0.54 -13.09 12.92 -14.05 -0.18 -13.28 16 12 N -0.40 -9.78 2.26 -58.98 -0.13 -9.91 16 13 C -0.38 -9.65 7.96 -14.93 -0.12 -9.77 16 14 H 0.11 2.94 7.90 -52.49 -0.41 2.52 16 15 C 0.09 2.23 4.30 -17.48 -0.08 2.16 16 16 N -0.85 -22.67 13.96 55.49 0.77 -21.90 16 17 Si 0.87 20.81 24.16 -169.99 -4.11 16.70 16 18 H -0.25 -5.78 6.05 56.52 0.34 -5.44 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.26 -6.54 6.90 56.52 0.39 -6.15 16 21 C 0.16 3.70 4.40 -83.69 -0.37 3.33 16 22 C -0.15 -3.41 5.77 -39.37 -0.23 -3.64 16 23 C -0.11 -2.09 9.77 -39.61 -0.39 -2.48 16 24 C -0.17 -3.05 10.04 -39.53 -0.40 -3.45 16 25 C -0.11 -2.10 10.04 -39.61 -0.40 -2.50 16 26 C -0.18 -4.07 9.03 -39.37 -0.36 -4.43 16 27 N -0.24 -3.46 12.09 32.06 0.39 -3.08 16 28 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 29 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.10 -0.05 8.14 -51.93 -0.42 -0.47 16 31 H 0.23 0.76 8.06 -52.48 -0.42 0.34 16 32 H 0.11 2.30 7.90 -51.93 -0.41 1.89 16 33 H 0.10 2.03 7.95 -51.93 -0.41 1.61 16 34 H 0.28 7.02 8.31 -40.82 -0.34 6.68 16 35 H 0.14 3.32 5.70 -52.48 -0.30 3.02 16 36 H 0.11 1.91 8.06 -52.49 -0.42 1.48 16 37 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 38 H 0.11 1.82 8.06 -52.49 -0.42 1.39 16 39 H 0.18 4.15 4.58 -56.01 -0.26 3.90 16 LS Contribution 339.92 15.07 5.12 5.12 Total: -1.00 -34.69 339.92 -6.95 -41.64 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -3.96 Total: 5.15 kcal Atomic # 6 Polarization: 10.22 SS G_CDS: -3.67 Total: 6.55 kcal Atomic # 7 Polarization: -45.51 SS G_CDS: 0.63 Total: -44.88 kcal Atomic # 8 Polarization: -29.32 SS G_CDS: -0.97 Total: -30.28 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.11 Total: 16.70 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.69 -6.95 -41.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811356317.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.389 kcal (2) G-P(sol) polarization free energy of solvation -34.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds