Wall clock time and date at job start Tue Mar 31 2020 06:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34608 * 125.74238 * 2 1 4 4 N 1.30848 * 107.63447 * 180.02562 * 3 2 1 5 5 C 1.34581 * 107.27223 * 0.02562 * 4 3 2 6 6 C 1.47753 * 126.05399 * 180.02562 * 5 4 3 7 7 O 1.21470 * 119.99803 * 180.02562 * 6 5 4 8 8 O 1.34719 * 119.99768 * 0.02562 * 6 5 4 9 9 C 1.45195 * 116.99585 * 185.07097 * 8 6 5 10 10 C 1.50703 * 109.47079 * 184.91989 * 9 8 6 11 11 O 1.21281 * 119.99686 * 4.98585 * 10 9 8 12 12 N 1.34776 * 120.00145 * 184.98872 * 10 9 8 13 13 C 1.37137 * 119.99868 * 3.75663 * 12 10 9 14 14 H 1.07994 * 120.00281 * 308.20389 * 13 12 10 15 15 C 1.38896 * 119.99693 * 128.20920 * 13 12 10 16 16 N 1.31420 * 119.99904 * 173.08944 * 15 13 12 17 17 Si 1.86800 * 120.00184 * 353.08863 * 15 13 12 18 18 H 1.48495 * 109.46986 * 95.34526 * 17 15 13 19 19 H 1.48501 * 109.46978 * 215.34490 * 17 15 13 20 20 H 1.48503 * 109.46854 * 335.34601 * 17 15 13 21 21 C 1.39793 * 119.99957 * 183.75770 * 12 10 9 22 22 C 1.38956 * 120.07833 * 171.69853 * 21 12 10 23 23 C 1.38079 * 119.92437 * 179.97438 * 22 21 12 24 24 C 1.38309 * 120.07570 * 359.97438 * 23 22 21 25 25 C 1.38311 * 120.15626 * 0.04297 * 24 23 22 26 26 C 1.38079 * 120.07712 * 359.95511 * 25 24 23 27 27 N 1.28842 * 125.74962 * 180.34429 * 2 1 3 28 28 H 1.09007 * 109.47281 * 89.99760 * 1 2 3 29 29 H 1.09004 * 109.46985 * 209.99662 * 1 2 3 30 30 H 1.08998 * 109.47525 * 329.99796 * 1 2 3 31 31 H 1.08005 * 126.18253 * 0.02643 * 3 2 1 32 32 H 1.08999 * 109.47376 * 64.92493 * 9 8 6 33 33 H 1.08994 * 109.47586 * 304.91824 * 9 8 6 34 34 H 0.96993 * 120.00130 * 179.97438 * 16 15 13 35 35 H 1.08006 * 120.03706 * 359.69572 * 22 21 12 36 36 H 1.07997 * 119.96308 * 179.97438 * 23 22 21 37 37 H 1.08003 * 119.91908 * 180.02562 * 24 23 22 38 38 H 1.08002 * 119.95763 * 179.97438 * 25 24 23 39 39 H 1.08001 * 120.03861 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2513 1.0925 0.0000 4 7 3.4950 0.6859 -0.0006 5 6 3.4753 -0.6598 -0.0015 6 6 4.6571 -1.5467 -0.0018 7 8 4.5113 -2.7526 -0.0031 8 8 5.8961 -1.0179 -0.0007 9 6 7.0082 -1.9443 -0.1154 10 6 8.3060 -1.1911 0.0246 11 8 8.2947 -0.0085 0.2933 12 7 9.4790 -1.8316 -0.1488 13 6 9.4912 -3.1494 -0.5281 14 1 8.9109 -3.8752 0.0223 15 6 10.2498 -3.5508 -1.6202 16 7 10.3708 -4.8287 -1.9022 17 14 11.0981 -2.2743 -2.6880 18 1 12.5016 -2.1031 -2.2343 19 1 11.0866 -2.7258 -4.1027 20 1 10.3802 -0.9791 -2.5759 21 6 10.6834 -1.1527 0.0580 22 6 11.8858 -1.8491 0.0494 23 6 13.0736 -1.1752 0.2535 24 6 13.0675 0.1915 0.4657 25 6 11.8725 0.8879 0.4752 26 6 10.6810 0.2204 0.2718 27 7 2.2177 -1.0456 -0.0063 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3634 0.8899 0.5138 31 1 1.9162 2.1193 0.0004 32 1 6.9751 -2.4330 -1.0892 33 1 6.9377 -2.6959 0.6708 34 1 10.9002 -5.1089 -2.6650 35 1 11.8910 -2.9170 -0.1122 36 1 14.0085 -1.7159 0.2474 37 1 13.9980 0.7162 0.6246 38 1 11.8714 1.9550 0.6417 39 1 9.7482 0.7648 0.2790 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000811356317.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:55 Heat of formation + Delta-G solvation = 24.876240 kcal Electronic energy + Delta-G solvation = -27314.487422 eV Core-core repulsion = 23225.620928 eV Total energy + Delta-G solvation = -4088.866495 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.116 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.59544 -42.07531 -41.33006 -39.24380 -37.68963 -37.00885 -35.66046 -34.25579 -32.96933 -31.78177 -31.63792 -29.78731 -28.52396 -27.20698 -25.57709 -23.83324 -23.36513 -22.99548 -21.98753 -21.40382 -20.05740 -19.57983 -18.32655 -18.23215 -17.98443 -17.75617 -17.37277 -17.36351 -16.99701 -16.28075 -16.08978 -15.80656 -15.40420 -15.02811 -14.77560 -14.58660 -14.44791 -14.16176 -14.02335 -14.00938 -13.70498 -13.69542 -13.19616 -12.94186 -12.69245 -12.50681 -12.22712 -12.12424 -12.01816 -11.89754 -11.61931 -11.57272 -11.38366 -10.88630 -10.70414 -10.24582 -9.66729 -8.92532 -8.59954 -6.56853 -0.10029 0.36041 0.54220 0.69845 0.93390 1.22159 1.27942 1.37952 1.57199 1.62043 1.87659 2.10680 2.34045 2.68761 3.02972 3.07474 3.38391 3.55775 3.77432 3.99898 4.10650 4.18068 4.20350 4.32382 4.42253 4.46289 4.60377 4.66687 4.71815 4.76245 4.82204 4.94067 5.21329 5.23995 5.44441 5.54748 5.56469 5.64981 5.71723 5.90518 5.96508 6.26613 6.35583 6.73668 6.88930 7.07366 7.36799 8.43859 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.018493 B = 0.003114 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.763290 B = 8990.480924 C = 9997.036851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.290 5.290 3 C 0.212 3.788 4 N -0.503 5.503 5 C 0.129 3.871 6 C 0.565 3.435 7 O -0.507 6.507 8 O -0.323 6.323 9 C 0.077 3.923 10 C 0.494 3.506 11 O -0.550 6.550 12 N -0.410 5.410 13 C -0.376 4.376 14 H 0.094 0.906 15 C 0.063 3.937 16 N -0.881 5.881 17 Si 0.912 3.088 18 H -0.233 1.233 19 H -0.283 1.283 20 H -0.281 1.281 21 C 0.123 3.877 22 C -0.171 4.171 23 C -0.106 4.106 24 C -0.152 4.152 25 C -0.105 4.105 26 C -0.202 4.202 27 N -0.258 5.258 28 H 0.111 0.889 29 H 0.100 0.900 30 H 0.149 0.851 31 H 0.289 0.711 32 H 0.111 0.889 33 H 0.109 0.891 34 H 0.287 0.713 35 H 0.121 0.879 36 H 0.145 0.855 37 H 0.156 0.844 38 H 0.149 0.851 39 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.548 12.998 2.588 19.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.087 5.087 3 C -0.082 4.082 4 N -0.229 5.229 5 C -0.146 4.146 6 C 0.406 3.594 7 O -0.393 6.393 8 O -0.236 6.236 9 C 0.001 3.999 10 C 0.285 3.715 11 O -0.433 6.433 12 N -0.122 5.122 13 C -0.503 4.503 14 H 0.112 0.888 15 C -0.145 4.145 16 N -0.515 5.515 17 Si 0.737 3.263 18 H -0.156 1.156 19 H -0.210 1.210 20 H -0.206 1.206 21 C 0.029 3.971 22 C -0.191 4.191 23 C -0.125 4.125 24 C -0.171 4.171 25 C -0.123 4.123 26 C -0.222 4.222 27 N -0.104 5.104 28 H 0.130 0.870 29 H 0.119 0.881 30 H 0.167 0.833 31 H 0.305 0.695 32 H 0.128 0.872 33 H 0.127 0.873 34 H 0.097 0.903 35 H 0.139 0.861 36 H 0.163 0.837 37 H 0.174 0.826 38 H 0.166 0.834 39 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -14.426 12.488 2.602 19.257 hybrid contribution 0.225 -0.371 -0.646 0.778 sum -14.201 12.118 1.956 18.771 Atomic orbital electron populations 1.22909 0.68177 1.08381 1.07137 1.47998 1.11173 1.02671 1.46839 1.27706 0.83850 0.97901 0.98783 1.71381 1.23393 1.08294 1.19792 1.21782 0.89823 0.89753 1.13220 1.19186 0.82227 0.85129 0.72873 1.90875 1.86889 1.15511 1.45996 1.86576 1.13845 1.40308 1.82905 1.22547 0.81297 0.90127 1.05910 1.20445 0.85584 0.86507 0.78990 1.90269 1.86653 1.15767 1.50617 1.41250 1.02245 1.11011 1.57702 1.18963 1.35100 0.81880 1.14315 0.88811 1.25805 0.95627 0.96959 0.96152 1.69698 1.37902 1.15477 1.28417 0.86348 0.82073 0.79577 0.78326 1.15609 1.21020 1.20638 1.18710 0.86773 0.92538 0.99127 1.21090 0.91911 1.00729 1.05397 1.21259 0.97091 0.95405 0.98732 1.21443 0.98951 0.93959 1.02701 1.21435 0.91552 1.00866 0.98445 1.22775 1.02593 0.93121 1.03707 1.74249 1.01861 1.15726 1.18518 0.87037 0.88107 0.83292 0.69547 0.87164 0.87295 0.90295 0.86110 0.83681 0.82626 0.83351 0.81933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.16 11.38 127.77 1.45 1.61 16 2 N -0.29 -4.63 3.72 -373.44 -1.39 -6.02 16 3 C 0.21 3.30 12.62 180.30 2.27 5.57 16 4 N -0.50 -14.90 11.42 -193.09 -2.21 -17.11 16 5 C 0.13 4.43 7.99 137.07 1.10 5.53 16 6 C 0.56 22.92 7.97 70.34 0.56 23.48 16 7 O -0.51 -22.13 16.78 19.93 0.33 -21.79 16 8 O -0.32 -14.07 9.77 -49.92 -0.49 -14.56 16 9 C 0.08 3.44 4.87 71.24 0.35 3.79 16 10 C 0.49 24.33 7.65 87.66 0.67 25.01 16 11 O -0.55 -28.14 12.92 15.72 0.20 -27.94 16 12 N -0.41 -20.86 2.26 -458.89 -1.04 -21.90 16 13 C -0.38 -20.01 7.96 84.02 0.67 -19.34 16 14 H 0.09 5.23 7.90 -2.91 -0.02 5.20 16 15 C 0.06 3.34 4.30 84.91 0.36 3.70 16 16 N -0.88 -48.17 13.96 21.65 0.30 -47.86 16 17 Si 0.91 43.55 24.16 68.60 1.66 45.20 16 18 H -0.23 -10.31 6.05 99.48 0.60 -9.70 16 19 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 20 H -0.28 -14.44 6.90 99.48 0.69 -13.75 16 21 C 0.12 5.94 4.40 38.22 0.17 6.11 16 22 C -0.17 -7.62 5.77 22.40 0.13 -7.49 16 23 C -0.11 -3.83 9.77 22.25 0.22 -3.61 16 24 C -0.15 -4.82 10.04 22.30 0.22 -4.60 16 25 C -0.10 -3.69 10.04 22.25 0.22 -3.46 16 26 C -0.20 -8.99 9.03 22.40 0.20 -8.78 16 27 N -0.26 -7.31 12.09 -52.49 -0.63 -7.94 16 28 H 0.11 -0.08 8.14 -2.38 -0.02 -0.10 16 29 H 0.10 0.31 8.14 -2.38 -0.02 0.29 16 30 H 0.15 -0.95 8.14 -2.39 -0.02 -0.97 16 31 H 0.29 0.43 8.06 -2.91 -0.02 0.40 16 32 H 0.11 4.88 7.90 -2.39 -0.02 4.86 16 33 H 0.11 4.63 7.95 -2.39 -0.02 4.61 16 34 H 0.29 14.56 8.31 -92.71 -0.77 13.79 16 35 H 0.12 5.81 5.70 -2.91 -0.02 5.79 16 36 H 0.15 4.26 8.06 -2.91 -0.02 4.23 16 37 H 0.16 3.56 8.06 -2.91 -0.02 3.54 16 38 H 0.15 4.13 8.06 -2.91 -0.02 4.11 16 39 H 0.16 7.75 4.58 -58.73 -0.27 7.48 16 Total: -1.00 -81.17 339.92 6.07 -75.10 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: 0.73 Total: 17.31 kcal Atomic # 6 Polarization: 18.91 SS G_CDS: 8.60 Total: 27.51 kcal Atomic # 7 Polarization: -95.87 SS G_CDS: -4.97 Total: -100.83 kcal Atomic # 8 Polarization: -64.34 SS G_CDS: 0.05 Total: -64.29 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 1.66 Total: 45.20 kcal Total: -81.17 6.07 -75.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811356317.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.975 kcal (2) G-P(sol) polarization free energy of solvation -81.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds