Wall clock time and date at job start Tue Mar 31 2020 05:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 119.99811 * 2 1 4 4 H 1.48497 * 109.46954 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46927 * 299.99675 * 3 2 1 6 6 H 1.48498 * 109.47225 * 59.99894 * 3 2 1 7 7 C 1.37880 * 119.99797 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99321 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99975 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.46660 * 179.97438 * 9 7 2 11 11 C 1.34776 * 119.99619 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00297 * 0.02562 * 11 10 9 13 13 C 1.50706 * 119.99939 * 180.02562 * 11 10 9 14 14 O 1.45195 * 109.47269 * 180.02562 * 13 11 10 15 15 C 1.34772 * 116.99972 * 179.97438 * 14 13 11 16 16 O 1.21541 * 120.00007 * 0.02562 * 15 14 13 17 17 C 1.47164 * 120.00088 * 179.97438 * 15 14 13 18 18 C 1.38011 * 126.81640 * 0.16046 * 17 15 14 19 19 N 1.34154 * 107.88010 * 180.29455 * 18 17 15 20 20 H 0.97000 * 125.15531 * 179.69406 * 19 18 17 21 21 N 1.39761 * 109.69187 * 359.71643 * 19 18 17 22 22 C 1.31364 * 109.09180 * 0.02562 * 21 19 18 23 23 C 1.48263 * 126.51634 * 180.02562 * 22 21 19 24 24 C 1.39817 * 120.91008 * 145.05244 * 23 22 21 25 25 C 1.37959 * 119.01794 * 179.97438 * 24 23 22 26 26 N 1.31934 * 120.88425 * 359.97438 * 25 24 23 27 27 C 1.31923 * 122.01666 * 0.02562 * 26 25 24 28 28 C 1.37973 * 120.88748 * 359.97438 * 27 26 25 29 29 H 0.97003 * 120.00166 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.47186 * 60.00606 * 9 7 2 31 31 H 1.09000 * 109.46991 * 299.99761 * 9 7 2 32 32 H 0.96997 * 120.00017 * 0.02562 * 10 9 7 33 33 H 1.09001 * 109.46948 * 59.99959 * 13 11 10 34 34 H 1.09002 * 109.46947 * 300.00665 * 13 11 10 35 35 H 1.07998 * 126.05594 * 359.97438 * 18 17 15 36 36 H 1.08004 * 120.48780 * 359.94930 * 24 23 22 37 37 H 1.08000 * 119.55967 * 180.27700 * 25 24 23 38 38 H 1.07998 * 119.55735 * 180.02562 * 27 26 25 39 39 H 1.07993 * 120.49007 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 1.7538 -4.8833 0.0011 12 8 0.5614 -5.1050 0.0011 13 6 2.7331 -6.0288 0.0016 14 8 2.0072 -7.2863 0.0015 15 6 2.7412 -8.4165 0.0015 16 8 3.9550 -8.3529 0.0020 17 6 2.0731 -9.7278 0.0019 18 6 0.7132 -9.9631 -0.0007 19 7 0.5251 -11.2914 0.0074 20 1 -0.3385 -11.7331 0.0119 21 7 1.7619 -11.9422 0.0089 22 6 2.7202 -11.0438 0.0024 23 6 4.1788 -11.3097 0.0009 24 6 5.0604 -10.4746 -0.6923 25 6 6.4103 -10.7582 -0.6669 26 7 6.8712 -11.7995 -0.0007 27 6 6.0738 -12.6119 0.6661 28 6 4.7105 -12.4016 0.6934 29 1 -0.4850 0.8401 -0.0004 30 1 0.6248 -2.5571 -0.8897 31 1 0.6241 -2.5566 0.8903 32 1 3.1567 -3.4354 0.0009 33 1 3.3597 -5.9707 0.8917 34 1 3.3599 -5.9714 -0.8883 35 1 -0.0620 -9.2112 -0.0030 36 1 4.6899 -9.6205 -1.2397 37 1 7.0995 -10.1164 -1.1956 38 1 6.4940 -13.4525 1.1983 39 1 4.0638 -13.0705 1.2417 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919423811.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:47 Heat of formation + Delta-G solvation = -7.234134 kcal Electronic energy + Delta-G solvation = -26164.983287 eV Core-core repulsion = 22074.724382 eV Total energy + Delta-G solvation = -4090.258905 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.116 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.73034 -40.18313 -40.04051 -38.67534 -36.34378 -34.29069 -33.98634 -32.44813 -31.54167 -31.14124 -30.94097 -29.07443 -26.72555 -24.70468 -24.03842 -23.58249 -22.54214 -21.16485 -20.38572 -19.98694 -18.81790 -17.50990 -17.35803 -16.96751 -16.69132 -16.33830 -16.18653 -15.78154 -15.37742 -15.24241 -15.05506 -14.50244 -14.36962 -14.23113 -13.96468 -13.81377 -13.32737 -13.03043 -12.93810 -12.49164 -12.05274 -12.03487 -11.79507 -11.55166 -11.01722 -10.97276 -10.93600 -10.70245 -10.63468 -10.37405 -9.70198 -9.59047 -9.45603 -9.31086 -9.23367 -9.16763 -8.81945 -8.03113 -6.22964 -4.30225 0.51884 0.96160 0.99174 1.82478 2.04637 2.46388 2.85951 3.13683 3.20406 3.27910 3.30808 3.63736 3.71984 4.01999 4.09175 4.27658 4.31265 4.60447 4.75724 4.84025 4.88820 4.94508 5.00708 5.13494 5.18792 5.21898 5.30920 5.39378 5.47454 5.63298 5.85984 6.02519 6.30795 6.47233 6.54406 6.89894 7.18473 7.26532 7.41687 7.56676 7.69247 7.76572 7.88465 8.45959 8.67493 8.92154 9.36387 10.87167 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.019583 B = 0.002158 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.450473 B =12971.833356 C =14289.009159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.545 4.545 8 H 0.065 0.935 9 C 0.251 3.749 10 N -0.706 5.706 11 C 0.500 3.500 12 O -0.537 6.537 13 C 0.052 3.948 14 O -0.328 6.328 15 C 0.541 3.459 16 O -0.508 6.508 17 C -0.271 4.271 18 C 0.150 3.850 19 N -0.459 5.459 20 H 0.449 0.551 21 N -0.274 5.274 22 C 0.174 3.826 23 C 0.013 3.987 24 C -0.107 4.107 25 C 0.093 3.907 26 N -0.478 5.478 27 C 0.087 3.913 28 C -0.141 4.141 29 H 0.266 0.734 30 H 0.029 0.971 31 H 0.029 0.971 32 H 0.393 0.607 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.206 0.794 36 H 0.154 0.846 37 H 0.160 0.840 38 H 0.158 0.842 39 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.879 -24.876 -0.242 25.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.583 4.583 8 H 0.083 0.917 9 C 0.131 3.869 10 N -0.356 5.356 11 C 0.283 3.717 12 O -0.415 6.415 13 C -0.026 4.026 14 O -0.243 6.243 15 C 0.387 3.613 16 O -0.398 6.398 17 C -0.284 4.284 18 C -0.001 4.001 19 N -0.164 5.164 20 H 0.295 0.705 21 N -0.095 5.095 22 C 0.005 3.995 23 C 0.002 3.998 24 C -0.128 4.128 25 C -0.064 4.064 26 N -0.187 5.187 27 C -0.069 4.069 28 C -0.162 4.162 29 H 0.076 0.924 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.226 0.774 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.223 0.777 36 H 0.171 0.829 37 H 0.177 0.823 38 H 0.175 0.825 39 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 5.775 -26.228 -0.233 26.857 hybrid contribution -0.430 1.983 0.095 2.032 sum 5.345 -24.244 -0.137 24.827 Atomic orbital electron populations 1.69982 1.06121 1.27318 1.48794 1.24959 0.94940 0.99529 0.94600 0.86336 0.79845 0.82807 0.77785 1.19572 1.20762 1.20771 1.21245 0.93388 0.90273 1.53376 0.91683 1.19180 0.88162 0.81565 0.98005 1.46371 1.11571 1.05361 1.72306 1.19894 0.89103 0.84001 0.78687 1.90693 1.16370 1.84599 1.49796 1.22862 0.94337 0.80613 1.04750 1.86580 1.39990 1.13798 1.83895 1.19855 0.85237 0.83611 0.72632 1.90819 1.14291 1.87507 1.47206 1.20257 0.91962 0.90673 1.25541 1.23451 0.97859 0.86810 0.91983 1.46029 1.08522 1.04674 1.57220 0.70506 1.77378 0.88484 1.19302 1.24327 1.21642 0.92586 0.88694 0.96559 1.17963 0.87842 0.95755 0.98194 1.22560 0.93961 0.98380 0.97924 1.22717 0.93483 0.93989 0.96195 1.67610 1.40400 1.04046 1.06675 1.22627 0.89638 0.98096 0.96571 1.22182 0.97061 0.97199 0.99731 0.92425 0.95257 0.95262 0.77360 0.88384 0.88355 0.77737 0.82905 0.82282 0.82524 0.84521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.40 13.29 55.43 0.74 -24.66 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.91 20.36 29.54 -169.99 -5.02 15.34 16 4 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.54 -14.27 9.28 -34.44 -0.32 -14.59 16 8 H 0.07 1.59 7.60 -52.49 -0.40 1.19 16 9 C 0.25 6.38 5.43 -5.19 -0.03 6.35 16 10 N -0.71 -13.98 5.55 -61.47 -0.34 -14.32 16 11 C 0.50 9.45 7.91 -10.98 -0.09 9.36 16 12 O -0.54 -12.35 16.50 -14.10 -0.23 -12.58 16 13 C 0.05 0.73 5.95 36.01 0.21 0.94 16 14 O -0.33 -4.71 9.60 -47.37 -0.45 -5.16 16 15 C 0.54 7.05 7.85 34.35 0.27 7.32 16 16 O -0.51 -7.03 12.28 -19.30 -0.24 -7.27 16 17 C -0.27 -3.02 6.28 -102.96 -0.65 -3.67 16 18 C 0.15 1.19 11.84 -16.62 -0.20 0.99 16 19 N -0.46 -3.12 7.20 30.82 0.22 -2.89 16 20 H 0.45 1.31 8.96 -182.85 -1.64 -0.33 16 21 N -0.27 -2.73 12.64 34.58 0.44 -2.29 16 22 C 0.17 1.94 6.98 -80.55 -0.56 1.38 16 23 C 0.01 0.14 5.75 -104.60 -0.60 -0.46 16 24 C -0.11 -1.19 7.90 -39.09 -0.31 -1.50 16 25 C 0.09 0.97 11.17 -17.61 -0.20 0.77 16 26 N -0.48 -5.32 10.35 -13.35 -0.14 -5.46 16 27 C 0.09 0.82 11.17 -17.61 -0.20 0.62 16 28 C -0.14 -1.34 9.88 -39.09 -0.39 -1.73 16 29 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.39 6.52 8.32 -40.82 -0.34 6.19 16 33 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.21 1.15 8.06 -52.49 -0.42 0.72 16 36 H 0.15 1.74 5.77 -52.48 -0.30 1.43 16 37 H 0.16 1.29 8.06 -52.49 -0.42 0.87 16 38 H 0.16 0.99 8.06 -52.49 -0.42 0.56 16 39 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 354.87 15.07 5.35 5.35 Total: -1.00 -35.43 354.87 -8.02 -43.45 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -5.20 Total: 3.09 kcal Atomic # 6 Polarization: 10.55 SS G_CDS: -3.14 Total: 7.41 kcal Atomic # 7 Polarization: -50.55 SS G_CDS: 0.92 Total: -49.63 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -0.92 Total: -25.01 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -35.43 -8.02 -43.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919423811.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.217 kcal (2) G-P(sol) polarization free energy of solvation -35.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds