Wall clock time and date at job start Tue Mar 31 2020 05:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 119.99811 * 2 1 4 4 H 1.48497 * 109.46954 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46927 * 299.99675 * 3 2 1 6 6 H 1.48498 * 109.47225 * 59.99894 * 3 2 1 7 7 C 1.37880 * 119.99797 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99321 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99975 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.46660 * 179.97438 * 9 7 2 11 11 C 1.34776 * 119.99619 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00297 * 0.02562 * 11 10 9 13 13 C 1.50706 * 119.99939 * 180.02562 * 11 10 9 14 14 O 1.45195 * 109.47269 * 180.02562 * 13 11 10 15 15 C 1.34772 * 116.99972 * 179.97438 * 14 13 11 16 16 O 1.21541 * 120.00007 * 0.02562 * 15 14 13 17 17 C 1.47164 * 120.00088 * 179.97438 * 15 14 13 18 18 C 1.38011 * 126.81640 * 0.16046 * 17 15 14 19 19 N 1.34154 * 107.88010 * 180.29455 * 18 17 15 20 20 H 0.97000 * 125.15531 * 179.69406 * 19 18 17 21 21 N 1.39761 * 109.69187 * 359.71643 * 19 18 17 22 22 C 1.31364 * 109.09180 * 0.02562 * 21 19 18 23 23 C 1.48263 * 126.51634 * 180.02562 * 22 21 19 24 24 C 1.39817 * 120.91008 * 145.05244 * 23 22 21 25 25 C 1.37959 * 119.01794 * 179.97438 * 24 23 22 26 26 N 1.31934 * 120.88425 * 359.97438 * 25 24 23 27 27 C 1.31923 * 122.01666 * 0.02562 * 26 25 24 28 28 C 1.37973 * 120.88748 * 359.97438 * 27 26 25 29 29 H 0.97003 * 120.00166 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.47186 * 60.00606 * 9 7 2 31 31 H 1.09000 * 109.46991 * 299.99761 * 9 7 2 32 32 H 0.96997 * 120.00017 * 0.02562 * 10 9 7 33 33 H 1.09001 * 109.46948 * 59.99959 * 13 11 10 34 34 H 1.09002 * 109.46947 * 300.00665 * 13 11 10 35 35 H 1.07998 * 126.05594 * 359.97438 * 18 17 15 36 36 H 1.08004 * 120.48780 * 359.94930 * 24 23 22 37 37 H 1.08000 * 119.55967 * 180.27700 * 25 24 23 38 38 H 1.07998 * 119.55735 * 180.02562 * 27 26 25 39 39 H 1.07993 * 120.49007 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 1.7538 -4.8833 0.0011 12 8 0.5614 -5.1050 0.0011 13 6 2.7331 -6.0288 0.0016 14 8 2.0072 -7.2863 0.0015 15 6 2.7412 -8.4165 0.0015 16 8 3.9550 -8.3529 0.0020 17 6 2.0731 -9.7278 0.0019 18 6 0.7132 -9.9631 -0.0007 19 7 0.5251 -11.2914 0.0074 20 1 -0.3385 -11.7331 0.0119 21 7 1.7619 -11.9422 0.0089 22 6 2.7202 -11.0438 0.0024 23 6 4.1788 -11.3097 0.0009 24 6 5.0604 -10.4746 -0.6923 25 6 6.4103 -10.7582 -0.6669 26 7 6.8712 -11.7995 -0.0007 27 6 6.0738 -12.6119 0.6661 28 6 4.7105 -12.4016 0.6934 29 1 -0.4850 0.8401 -0.0004 30 1 0.6248 -2.5571 -0.8897 31 1 0.6241 -2.5566 0.8903 32 1 3.1567 -3.4354 0.0009 33 1 3.3597 -5.9707 0.8917 34 1 3.3599 -5.9714 -0.8883 35 1 -0.0620 -9.2112 -0.0030 36 1 4.6899 -9.6205 -1.2397 37 1 7.0995 -10.1164 -1.1956 38 1 6.4940 -13.4525 1.1983 39 1 4.0638 -13.0705 1.2417 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919423811.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:47 Heat of formation + Delta-G solvation = -32.643354 kcal Electronic energy + Delta-G solvation = -26166.085113 eV Core-core repulsion = 22074.724382 eV Total energy + Delta-G solvation = -4091.360732 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.116 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.47977 -41.27417 -40.78245 -40.18764 -37.42595 -36.14617 -34.73198 -34.39080 -32.30677 -31.96555 -31.66528 -30.53799 -28.43406 -25.50285 -25.04382 -24.49782 -24.15084 -21.99293 -21.59000 -21.18440 -19.70499 -18.94070 -18.50696 -17.83431 -17.64091 -17.59905 -17.08881 -17.01967 -16.83730 -16.46694 -16.19037 -15.78418 -15.70256 -15.05628 -14.75513 -14.69353 -14.56485 -14.29561 -14.14296 -13.97800 -13.59856 -13.54829 -12.89861 -12.78237 -12.74437 -12.29645 -12.21414 -11.85035 -11.71605 -11.50959 -11.45096 -10.86554 -10.81524 -10.47702 -10.33500 -10.04959 -9.94544 -9.89233 -8.28703 -6.44483 -0.27168 0.22498 0.25371 1.02996 1.19199 1.45658 1.45829 1.59145 1.60012 1.63591 1.97958 2.35694 2.62015 2.88410 3.05851 3.06881 3.36249 3.60602 3.72221 3.92720 3.97930 4.11259 4.13401 4.13983 4.18225 4.28009 4.30327 4.66659 4.72554 4.92592 5.08162 5.10881 5.24769 5.27191 5.32589 5.44921 5.65497 5.73816 5.84221 6.02089 6.22332 6.64896 6.68471 6.82950 7.01642 7.22683 7.38728 8.83444 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.019583 B = 0.002158 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.450473 B =12971.833356 C =14289.009159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.983 3.017 4 H -0.253 1.253 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.555 4.555 8 H 0.085 0.915 9 C 0.267 3.733 10 N -0.700 5.700 11 C 0.501 3.499 12 O -0.582 6.582 13 C 0.064 3.936 14 O -0.341 6.341 15 C 0.543 3.457 16 O -0.521 6.521 17 C -0.303 4.303 18 C 0.172 3.828 19 N -0.439 5.439 20 H 0.467 0.533 21 N -0.285 5.285 22 C 0.165 3.835 23 C -0.003 4.003 24 C -0.118 4.118 25 C 0.086 3.914 26 N -0.499 5.499 27 C 0.087 3.913 28 C -0.141 4.141 29 H 0.269 0.731 30 H -0.007 1.007 31 H -0.007 1.007 32 H 0.412 0.588 33 H 0.122 0.878 34 H 0.126 0.874 35 H 0.230 0.770 36 H 0.146 0.854 37 H 0.176 0.824 38 H 0.187 0.813 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.271 -25.588 0.010 26.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.195 4.195 3 Si 0.806 3.194 4 H -0.177 1.177 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.592 4.592 8 H 0.103 0.897 9 C 0.144 3.856 10 N -0.352 5.352 11 C 0.287 3.713 12 O -0.463 6.463 13 C -0.013 4.013 14 O -0.257 6.257 15 C 0.390 3.610 16 O -0.411 6.411 17 C -0.316 4.316 18 C 0.019 3.981 19 N -0.146 5.146 20 H 0.317 0.683 21 N -0.106 5.106 22 C -0.004 4.004 23 C -0.013 4.013 24 C -0.139 4.139 25 C -0.070 4.070 26 N -0.208 5.208 27 C -0.070 4.070 28 C -0.162 4.162 29 H 0.077 0.923 30 H 0.011 0.989 31 H 0.011 0.989 32 H 0.248 0.752 33 H 0.140 0.860 34 H 0.144 0.856 35 H 0.246 0.754 36 H 0.164 0.836 37 H 0.193 0.807 38 H 0.203 0.797 39 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 7.202 -26.993 0.016 27.938 hybrid contribution -0.956 2.073 0.024 2.283 sum 6.246 -24.921 0.041 25.691 Atomic orbital electron populations 1.70132 1.08163 1.28493 1.50027 1.26026 0.95771 1.03787 0.93956 0.85134 0.79139 0.77502 0.77591 1.17675 1.20558 1.20605 1.21647 0.94422 0.90455 1.52722 0.89658 1.18617 0.88557 0.83760 0.94628 1.46049 1.11714 1.04808 1.72583 1.20679 0.89323 0.84632 0.76698 1.90669 1.18801 1.85295 1.51490 1.22706 0.92506 0.78871 1.07173 1.86562 1.40644 1.14106 1.84377 1.20085 0.85164 0.83596 0.72175 1.90812 1.14745 1.87558 1.48023 1.20301 0.93283 0.89830 1.28225 1.23765 0.97252 0.87449 0.89615 1.46069 1.08630 1.04390 1.55517 0.68320 1.77327 0.89231 1.19556 1.24490 1.21707 0.92843 0.88864 0.97002 1.18209 0.88176 0.96367 0.98596 1.22535 0.94347 0.98537 0.98521 1.22994 0.93628 0.94188 0.96219 1.67665 1.41083 1.04637 1.07461 1.23133 0.89607 0.98346 0.95900 1.22384 0.97447 0.96925 0.99416 0.92254 0.98862 0.98917 0.75155 0.86022 0.85643 0.75354 0.83627 0.80705 0.79658 0.82946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.57 13.29 21.45 0.28 -54.29 16 2 C 0.00 0.23 5.46 84.65 0.46 0.70 16 3 Si 0.98 41.29 29.54 68.60 2.03 43.32 16 4 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16 5 H -0.28 -11.60 7.11 99.48 0.71 -10.90 16 6 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.55 -29.04 9.28 25.60 0.24 -28.80 16 8 H 0.09 4.02 7.60 -2.91 -0.02 4.00 16 9 C 0.27 13.98 5.43 85.63 0.46 14.44 16 10 N -0.70 -27.67 5.55 -466.78 -2.59 -30.26 16 11 C 0.50 18.85 7.91 87.66 0.69 19.55 16 12 O -0.58 -27.39 16.50 15.76 0.26 -27.13 16 13 C 0.06 1.70 5.95 71.24 0.42 2.13 16 14 O -0.34 -9.44 9.60 -50.44 -0.48 -9.93 16 15 C 0.54 13.66 7.85 70.17 0.55 14.21 16 16 O -0.52 -14.00 12.28 19.70 0.24 -13.76 16 17 C -0.30 -6.44 6.28 -18.79 -0.12 -6.56 16 18 C 0.17 2.41 11.84 84.28 1.00 3.41 16 19 N -0.44 -5.03 7.20 -56.40 -0.41 -5.44 16 20 H 0.47 1.55 8.96 -213.54 -1.91 -0.36 16 21 N -0.29 -5.24 12.64 -44.51 -0.56 -5.80 16 22 C 0.16 3.52 6.98 44.08 0.31 3.83 16 23 C 0.00 -0.07 5.75 -19.85 -0.11 -0.19 16 24 C -0.12 -2.61 7.90 22.59 0.18 -2.43 16 25 C 0.09 1.75 11.17 84.61 0.95 2.70 16 26 N -0.50 -10.65 10.35 -196.14 -2.03 -12.68 16 27 C 0.09 1.49 11.17 84.62 0.95 2.44 16 28 C -0.14 -2.52 9.88 22.59 0.22 -2.30 16 29 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 30 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 31 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 32 H 0.41 13.09 8.32 -92.71 -0.77 12.31 16 33 H 0.12 2.71 8.14 -2.39 -0.02 2.69 16 34 H 0.13 2.70 8.14 -2.39 -0.02 2.68 16 35 H 0.23 2.02 8.06 -2.91 -0.02 2.00 16 36 H 0.15 3.35 5.77 -2.91 -0.02 3.33 16 37 H 0.18 2.76 8.06 -2.91 -0.02 2.74 16 38 H 0.19 1.92 8.06 -2.91 -0.02 1.90 16 39 H 0.15 2.14 8.06 -2.91 -0.02 2.11 16 Total: -1.00 -78.68 354.87 1.39 -77.29 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -1.55 Total: 15.54 kcal Atomic # 6 Polarization: 16.93 SS G_CDS: 6.20 Total: 23.12 kcal Atomic # 7 Polarization: -103.16 SS G_CDS: -5.30 Total: -108.46 kcal Atomic # 8 Polarization: -50.83 SS G_CDS: 0.02 Total: -50.81 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.32 kcal Total: -78.68 1.39 -77.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919423811.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.646 kcal (2) G-P(sol) polarization free energy of solvation -78.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds