Wall clock time and date at job start Tue Mar 31 2020 05:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 119.99498 * 2 1 4 4 H 1.48508 * 109.47044 * 239.99992 * 3 2 1 5 5 H 1.48498 * 109.47176 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47008 * 120.00480 * 3 2 1 7 7 C 1.38699 * 120.00424 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99601 * 179.97438 * 7 2 1 9 9 O 1.34810 * 120.00057 * 359.97438 * 7 2 1 10 10 C 1.35523 * 117.00007 * 185.07938 * 9 7 2 11 11 C 1.38828 * 120.15966 * 354.40894 * 10 9 7 12 12 C 1.38026 * 120.07266 * 180.02562 * 11 10 9 13 13 C 1.38582 * 120.40158 * 0.02562 * 12 11 10 14 14 C 1.37824 * 120.32372 * 359.97438 * 13 12 11 15 15 C 1.39673 * 119.92019 * 0.02562 * 14 13 12 16 16 C 1.47507 * 120.19871 * 179.97438 * 15 14 13 17 17 O 1.21604 * 119.99950 * 180.02562 * 16 15 14 18 18 N 1.34775 * 120.00067 * 359.97438 * 16 15 14 19 19 C 1.40088 * 120.00196 * 180.02562 * 18 16 15 20 20 C 1.40419 * 125.97367 * 359.71908 * 19 18 16 21 21 C 1.35231 * 107.86663 * 179.82696 * 20 19 18 22 22 N 1.34971 * 107.86474 * 0.42825 * 21 20 19 23 23 C 1.46498 * 125.97538 * 179.72714 * 22 21 20 24 24 C 1.50706 * 109.47378 * 124.97537 * 23 22 21 25 25 N 1.34776 * 120.00085 * 179.97438 * 24 23 22 26 26 O 1.21283 * 119.99302 * 0.02562 * 24 23 22 27 27 N 1.31229 * 125.97795 * 180.02562 * 19 18 16 28 28 H 0.96999 * 120.00900 * 0.02562 * 1 2 3 29 29 H 1.07998 * 119.96344 * 0.27201 * 11 10 9 30 30 H 1.08001 * 119.80263 * 179.97438 * 12 11 10 31 31 H 1.08003 * 119.83793 * 179.97438 * 13 12 11 32 32 H 1.08001 * 120.03549 * 180.02562 * 14 13 12 33 33 H 0.97003 * 120.00199 * 0.02562 * 18 16 15 34 34 H 1.08000 * 126.06866 * 359.97438 * 20 19 18 35 35 H 1.08004 * 126.06909 * 180.11553 * 21 20 19 36 36 H 1.08997 * 109.47126 * 244.97636 * 23 22 21 37 37 H 1.09000 * 109.47284 * 4.97489 * 23 22 21 38 38 H 0.97003 * 119.99932 * 0.02562 * 25 24 23 39 39 H 0.96996 * 119.99845 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1028 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0087 -1.2011 -0.0005 8 1 3.0887 -1.2010 -0.0010 9 8 1.3348 -2.3687 -0.0005 10 6 2.0689 -3.5028 0.1058 11 6 3.4557 -3.4399 0.0919 12 6 4.2016 -4.5962 0.1998 13 6 3.5750 -5.8262 0.3221 14 6 2.1993 -5.9078 0.3378 15 6 1.4312 -4.7462 0.2295 16 6 -0.0416 -4.8264 0.2451 17 8 -0.7067 -3.8128 0.1500 18 7 -0.6501 -6.0231 0.3635 19 6 -2.0488 -6.0993 0.3778 20 6 -2.9350 -5.0142 0.2830 21 6 -4.1953 -5.5025 0.3304 22 7 -4.1151 -6.8435 0.4600 23 6 -5.2475 -7.7681 0.5552 24 6 -5.1248 -8.8244 -0.5127 25 7 -6.0602 -9.7891 -0.6171 26 8 -4.1838 -8.8068 -1.2776 27 7 -2.7600 -7.1967 0.4876 28 1 -0.4851 0.8400 -0.0004 29 1 3.9514 -2.4848 0.0004 30 1 5.2802 -4.5423 0.1880 31 1 4.1676 -6.7253 0.4055 32 1 1.7157 -6.8687 0.4338 33 1 -0.1195 -6.8317 0.4390 34 1 -2.6592 -3.9745 0.1868 35 1 -5.1045 -4.9218 0.2791 36 1 -5.2481 -8.2421 1.5367 37 1 -6.1783 -7.2180 0.4168 38 1 -6.8127 -9.8033 -0.0050 39 1 -5.9814 -10.4687 -1.3046 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919854597.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:48 Heat of formation + Delta-G solvation = 32.977768 kcal Electronic energy + Delta-G solvation = -26954.287770 eV Core-core repulsion = 22865.772584 eV Total energy + Delta-G solvation = -4088.515186 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.116 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.10949 -39.71323 -39.28723 -38.02743 -36.35713 -34.42959 -34.01943 -32.37078 -32.30696 -30.43023 -29.67933 -28.93636 -26.99656 -25.39803 -23.56581 -21.87430 -21.55708 -21.11729 -20.26098 -19.43888 -18.05683 -17.96049 -17.50045 -17.26731 -16.58789 -16.11824 -15.82069 -15.27662 -14.83711 -14.68046 -14.35784 -14.25838 -14.21066 -13.79028 -13.60690 -13.28747 -13.00916 -12.93146 -12.58805 -12.49524 -12.39749 -11.71691 -11.35732 -11.11681 -10.89498 -10.81175 -10.63862 -10.47976 -10.34800 -10.09647 -10.03433 -9.56307 -8.87911 -8.85370 -8.46414 -8.31613 -7.82586 -7.31516 -6.45096 -4.04626 1.62840 2.07009 2.30634 2.32173 2.34389 3.10625 3.12425 3.14480 3.16708 3.17707 3.65395 3.88717 3.93608 4.40610 4.51287 4.64128 4.76753 4.95983 5.05828 5.16434 5.36483 5.52139 5.62793 5.75532 5.94546 6.09913 6.13041 6.20400 6.40071 6.55504 6.64301 6.69462 6.87397 6.92634 7.05450 7.19209 7.22116 7.28331 7.38554 7.62251 7.68395 7.92862 7.93883 8.30329 8.93145 8.97326 9.65436 10.68476 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.015139 B = 0.002979 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.099078 B = 9395.352371 C =11051.511488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.046 3.954 3 Si 0.941 3.059 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.403 4.403 8 H 0.094 0.906 9 O -0.122 6.122 10 C 0.192 3.808 11 C -0.236 4.236 12 C -0.048 4.048 13 C -0.229 4.229 14 C -0.036 4.036 15 C -0.226 4.226 16 C 0.562 3.438 17 O -0.476 6.476 18 N -0.644 5.644 19 C 0.313 3.687 20 C -0.252 4.252 21 C 0.052 3.948 22 N -0.373 5.373 23 C 0.126 3.874 24 C 0.498 3.502 25 N -0.858 5.858 26 O -0.505 6.505 27 N -0.311 5.311 28 H 0.272 0.728 29 H 0.133 0.867 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.113 0.887 33 H 0.407 0.593 34 H 0.179 0.821 35 H 0.175 0.825 36 H 0.110 0.890 37 H 0.124 0.876 38 H 0.400 0.600 39 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.042 -15.108 2.676 18.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.162 4.162 3 Si 0.765 3.235 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.479 4.479 8 H 0.111 0.889 9 O -0.020 6.020 10 C 0.132 3.868 11 C -0.255 4.255 12 C -0.067 4.067 13 C -0.248 4.248 14 C -0.055 4.055 15 C -0.231 4.231 16 C 0.352 3.648 17 O -0.347 6.347 18 N -0.296 5.296 19 C 0.056 3.944 20 C -0.282 4.282 21 C -0.091 4.091 22 N -0.158 5.158 23 C 0.000 4.000 24 C 0.280 3.720 25 N -0.424 5.424 26 O -0.377 6.377 27 N -0.140 5.140 28 H 0.082 0.918 29 H 0.151 0.849 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.131 0.869 33 H 0.243 0.757 34 H 0.196 0.804 35 H 0.192 0.808 36 H 0.128 0.872 37 H 0.142 0.858 38 H 0.229 0.771 39 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -10.329 -15.152 2.288 18.480 hybrid contribution 0.327 0.729 -0.043 0.800 sum -10.002 -14.423 2.245 17.694 Atomic orbital electron populations 1.70104 1.05956 1.27904 1.42247 1.25377 0.95811 0.98936 0.96112 0.85797 0.78805 0.79649 0.79272 1.19358 1.20157 1.19361 1.21457 0.91910 0.81053 1.53493 0.88851 1.84157 1.33594 1.11002 1.73243 1.19205 0.89881 0.87204 0.90523 1.21151 0.93261 0.99395 1.11721 1.20924 0.98719 0.92282 0.94757 1.20471 0.93963 0.97219 1.13124 1.20803 0.94012 0.95511 0.95172 1.18584 0.90651 0.92437 1.21445 1.18300 0.88076 0.81779 0.76642 1.90860 1.65006 1.33550 1.45250 1.42804 1.01690 1.10919 1.74147 1.19236 0.85266 0.92241 0.97676 1.22092 0.89755 1.01981 1.14340 1.22524 1.00100 0.83683 1.02832 1.47360 1.03622 1.04421 1.60410 1.21281 0.87975 0.91281 0.99475 1.20775 0.82571 0.82889 0.85724 1.43799 1.27966 1.31765 1.38907 1.90875 1.30828 1.73671 1.42298 1.77382 0.86149 1.19560 1.30944 0.91759 0.84936 0.87059 0.87096 0.86881 0.75673 0.80396 0.80827 0.87193 0.85841 0.77143 0.76497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.64 13.67 55.48 0.76 -23.88 16 2 C 0.05 1.26 5.49 -17.52 -0.10 1.16 16 3 Si 0.94 20.31 29.55 -169.99 -5.02 15.29 16 4 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 5 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16 6 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 7 C -0.40 -11.27 9.49 30.90 0.29 -10.98 16 8 H 0.09 2.36 5.21 -52.49 -0.27 2.09 16 9 O -0.12 -3.55 7.84 -21.05 -0.16 -3.72 16 10 C 0.19 4.74 6.66 -38.60 -0.26 4.48 16 11 C -0.24 -5.03 9.16 -39.44 -0.36 -5.39 16 12 C -0.05 -0.85 10.03 -39.53 -0.40 -1.25 16 13 C -0.23 -3.80 10.03 -39.61 -0.40 -4.20 16 14 C -0.04 -0.64 9.53 -39.20 -0.37 -1.01 16 15 C -0.23 -4.98 5.89 -104.82 -0.62 -5.60 16 16 C 0.56 12.84 7.73 -12.48 -0.10 12.74 16 17 O -0.48 -12.81 12.29 -16.58 -0.20 -13.02 16 18 N -0.64 -12.43 5.40 -12.09 -0.07 -12.50 16 19 C 0.31 6.17 8.11 -154.45 -1.25 4.92 16 20 C -0.25 -4.85 9.60 -39.83 -0.38 -5.23 16 21 C 0.05 0.75 11.43 -17.24 -0.20 0.55 16 22 N -0.37 -5.33 3.40 -62.56 -0.21 -5.54 16 23 C 0.13 1.04 6.99 -5.19 -0.04 1.00 16 24 C 0.50 5.08 8.13 -10.98 -0.09 4.99 16 25 N -0.86 -4.28 8.87 31.22 0.28 -4.00 16 26 O -0.50 -8.35 16.54 5.56 0.09 -8.25 16 27 N -0.31 -5.64 11.65 31.43 0.37 -5.27 16 28 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 29 H 0.13 2.77 5.64 -52.49 -0.30 2.47 16 30 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 31 H 0.11 1.50 8.06 -52.48 -0.42 1.07 16 32 H 0.11 1.60 6.40 -52.49 -0.34 1.26 16 33 H 0.41 6.59 6.85 -40.82 -0.28 6.31 16 34 H 0.18 3.94 5.91 -52.49 -0.31 3.63 16 35 H 0.17 1.71 8.06 -52.48 -0.42 1.29 16 36 H 0.11 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.12 0.48 8.07 -51.93 -0.42 0.06 16 38 H 0.40 0.43 8.83 -40.82 -0.36 0.07 16 39 H 0.40 1.90 8.93 -40.82 -0.36 1.53 16 LS Contribution 345.27 15.07 5.20 5.20 Total: -1.00 -40.43 345.27 -6.70 -47.13 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -3.46 Total: 12.36 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: -4.26 Total: -3.80 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: 1.12 Total: -51.19 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: -0.28 Total: -24.99 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -40.43 -6.70 -47.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919854597.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.105 kcal (2) G-P(sol) polarization free energy of solvation -40.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds