Wall clock time and date at job start Tue Mar 31 2020 05:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46493 * 109.47156 * 2 1 4 4 C 1.46506 * 119.99811 * 90.00429 * 3 2 1 5 5 C 1.50703 * 109.47289 * 89.99713 * 4 3 2 6 6 H 1.07994 * 119.99399 * 0.02562 * 5 4 3 7 7 C 1.37874 * 119.99789 * 179.97438 * 5 4 3 8 8 N 1.31518 * 120.00144 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99733 * 179.97438 * 7 5 4 10 10 H 1.48490 * 109.47181 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46716 * 120.00463 * 9 7 5 12 12 H 1.48500 * 109.46999 * 240.00161 * 9 7 5 13 13 C 1.34778 * 120.00131 * 269.99999 * 3 2 1 14 14 O 1.21279 * 119.99362 * 180.02562 * 13 3 2 15 15 C 1.50696 * 119.99888 * 0.02562 * 13 3 2 16 16 O 1.45204 * 109.46985 * 180.02562 * 15 13 3 17 17 C 1.34231 * 116.99938 * 180.02562 * 16 15 13 18 18 O 1.20819 * 119.99926 * 359.97438 * 17 16 15 19 19 C 1.50700 * 119.99669 * 180.02562 * 17 16 15 20 20 H 1.08997 * 108.86460 * 39.99641 * 19 17 16 21 21 C 1.52824 * 108.88855 * 281.40411 * 19 17 16 22 22 S 1.82011 * 108.23767 * 187.34859 * 21 19 17 23 23 C 1.81846 * 101.18129 * 61.51778 * 22 21 19 24 24 C 1.50143 * 109.06699 * 315.88898 * 23 22 21 25 25 O 1.21277 * 116.82898 * 200.58915 * 24 23 22 26 26 N 1.31770 * 126.33914 * 20.57191 * 24 23 22 27 27 H 1.08997 * 109.47280 * 59.99767 * 1 2 3 28 28 H 1.08998 * 109.47236 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47195 * 299.99586 * 1 2 3 30 30 H 1.09006 * 109.46591 * 239.99755 * 2 1 3 31 31 H 1.09005 * 109.46719 * 120.00515 * 2 1 3 32 32 H 1.09001 * 109.47060 * 210.00163 * 4 3 2 33 33 H 1.09004 * 109.47073 * 329.99652 * 4 3 2 34 34 H 0.96997 * 119.99752 * 179.97438 * 8 7 5 35 35 H 1.08997 * 109.47440 * 299.99997 * 15 13 3 36 36 H 1.09001 * 109.47288 * 59.99909 * 15 13 3 37 37 H 1.09004 * 109.71643 * 307.11230 * 21 19 17 38 38 H 1.08998 * 109.70899 * 67.74375 * 21 19 17 39 39 H 1.08999 * 109.54265 * 196.01033 * 23 22 21 40 40 H 1.09003 * 109.53569 * 75.76476 * 23 22 21 41 41 H 0.97000 * 115.07874 * 173.51202 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2626 2.0717 1.2688 5 6 3.6859 1.8348 1.7038 6 1 4.3428 1.2307 1.0957 7 6 4.1495 2.3902 2.8775 8 7 3.3495 3.1263 3.6177 9 14 5.9135 2.0960 3.4171 10 1 6.6008 1.2401 2.4171 11 1 6.6216 3.3969 3.5247 12 1 5.9205 1.4178 4.7381 13 6 2.2430 2.0165 -1.1672 14 8 2.6477 3.1598 -1.1670 15 6 1.9912 1.3063 -2.4723 16 8 2.3065 2.1957 -3.5759 17 6 2.1346 1.7123 -4.8163 18 8 1.7345 0.5834 -4.9746 19 6 2.4418 2.5775 -6.0114 20 1 3.3482 3.1483 -5.8095 21 6 1.2830 3.5497 -6.2293 22 16 1.5665 4.4318 -7.7959 23 6 1.5545 3.0546 -8.9833 24 6 2.3631 1.9191 -8.4256 25 8 2.7744 1.0988 -9.2185 26 7 2.6697 1.7273 -7.1585 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.0956 3.1409 1.1385 33 1 1.5817 1.6876 2.0285 34 1 3.6756 3.5168 4.4435 35 1 2.6210 0.4186 -2.5303 36 1 0.9432 1.0126 -2.5298 37 1 0.3446 2.9975 -6.2817 38 1 1.2438 4.2650 -5.4079 39 1 1.9899 3.3831 -9.9271 40 1 0.5288 2.7250 -9.1488 41 1 3.1166 0.8882 -6.9660 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000923933154.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:39 Heat of formation + Delta-G solvation = -138.416893 kcal Electronic energy + Delta-G solvation = -25927.557576 eV Core-core repulsion = 21934.761359 eV Total energy + Delta-G solvation = -3992.796216 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.113 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.42364 -40.27860 -39.12434 -37.06099 -36.13144 -35.43781 -32.92165 -31.56469 -30.62298 -30.28177 -29.32560 -26.84844 -25.68398 -23.19246 -22.88761 -21.86638 -20.49254 -19.02801 -18.62541 -18.02575 -17.42452 -17.16434 -16.64931 -16.54964 -16.31322 -16.11403 -15.71752 -15.37169 -14.91987 -14.60958 -14.36591 -14.08512 -13.73315 -13.57788 -13.37900 -13.20815 -12.88836 -12.67992 -12.37096 -12.26360 -12.15266 -11.75267 -11.43536 -11.32931 -11.08796 -11.08350 -10.97005 -10.76817 -10.63931 -10.29776 -10.21886 -9.87679 -9.72357 -9.14652 -8.51671 -8.40114 -7.86644 -6.12755 -4.17938 0.79599 1.36940 1.63711 1.91170 2.09854 2.67931 3.10109 3.25096 3.33273 3.36775 3.57096 3.63029 3.82078 4.20724 4.31341 4.38936 4.48455 4.69027 4.79826 4.81132 4.94456 4.96497 5.02069 5.22083 5.23561 5.47606 5.61970 5.86345 5.95001 6.00722 6.09754 6.34596 6.63783 6.88086 7.20612 7.29711 7.38283 7.46804 7.82925 8.12101 8.17544 8.72961 8.89457 9.47592 10.95466 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.018811 B = 0.002485 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.125676 B =11266.744406 C =11654.196823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.101 3.899 3 N -0.590 5.590 4 C 0.247 3.753 5 C -0.529 4.529 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.893 5.893 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.283 1.283 13 C 0.506 3.494 14 O -0.517 6.517 15 C 0.049 3.951 16 O -0.319 6.319 17 C 0.453 3.547 18 O -0.494 6.494 19 C 0.158 3.842 20 H 0.132 0.868 21 C -0.102 4.102 22 S -0.200 6.200 23 C -0.111 4.111 24 C 0.532 3.468 25 O -0.537 6.537 26 N -0.699 5.699 27 H 0.049 0.951 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.089 0.911 32 H 0.046 0.954 33 H 0.036 0.964 34 H 0.264 0.736 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.147 0.853 39 H 0.146 0.854 40 H 0.126 0.874 41 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.251 -2.440 -19.740 21.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.324 5.324 4 C 0.129 3.871 5 C -0.568 4.568 6 H 0.077 0.923 7 C -0.140 4.140 8 N -0.532 5.532 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.209 1.209 13 C 0.291 3.709 14 O -0.393 6.393 15 C -0.028 4.028 16 O -0.232 6.232 17 C 0.292 3.708 18 O -0.381 6.381 19 C 0.049 3.951 20 H 0.149 0.851 21 C -0.251 4.251 22 S 0.028 5.972 23 C -0.261 4.261 24 C 0.317 3.683 25 O -0.415 6.415 26 N -0.352 5.352 27 H 0.068 0.932 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.107 0.893 32 H 0.064 0.936 33 H 0.054 0.946 34 H 0.073 0.927 35 H 0.117 0.883 36 H 0.116 0.884 37 H 0.123 0.877 38 H 0.165 0.835 39 H 0.164 0.836 40 H 0.144 0.856 41 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -6.956 -1.086 -20.239 21.429 hybrid contribution 0.771 -1.953 0.916 2.291 sum -6.186 -3.039 -19.323 20.515 Atomic orbital electron populations 1.22234 0.96453 1.01772 1.02421 1.21527 0.93795 0.83903 1.03112 1.48224 1.63609 1.13411 1.07119 1.19363 0.96585 0.93715 0.77445 1.21442 0.96781 1.32163 1.06429 0.92334 1.24932 0.97963 0.94802 0.96334 1.69935 1.35657 1.33290 1.14335 0.86427 0.84448 0.78124 0.78339 1.19786 1.20800 1.20924 1.19631 0.79932 0.87177 0.84193 1.90730 1.44489 1.17424 1.86663 1.23106 1.02992 0.92622 0.84129 1.86544 1.77839 1.45027 1.13812 1.23618 0.75176 0.86842 0.85173 1.90728 1.41241 1.19586 1.86557 1.20400 1.02216 0.90308 0.82175 0.85088 1.23740 0.99518 1.01203 1.00638 1.87554 1.95377 1.13346 1.00966 1.23692 1.05095 0.94717 1.02621 1.19251 0.80341 0.87106 0.81620 1.90854 1.52448 1.44610 1.53552 1.44695 1.60678 1.24360 1.05485 0.93200 0.91836 0.91693 0.91788 0.89290 0.93633 0.94556 0.92658 0.88318 0.88416 0.87737 0.83517 0.83636 0.85586 0.75316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.06 10.24 37.16 0.38 -1.68 16 2 C 0.10 1.46 5.93 -4.05 -0.02 1.44 16 3 N -0.59 -11.53 2.46 -175.05 -0.43 -11.96 16 4 C 0.25 6.10 5.16 -5.19 -0.03 6.08 16 5 C -0.53 -14.39 9.39 -34.44 -0.32 -14.72 16 6 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -25.73 13.29 55.43 0.74 -24.99 16 9 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 10 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 C 0.51 9.79 7.75 -10.99 -0.09 9.70 16 14 O -0.52 -12.33 16.08 -14.10 -0.23 -12.56 16 15 C 0.05 0.68 4.50 36.00 0.16 0.85 16 16 O -0.32 -4.30 9.76 -45.91 -0.45 -4.74 16 17 C 0.45 4.95 7.02 36.01 0.25 5.20 16 18 O -0.49 -6.29 15.98 -18.74 -0.30 -6.59 16 19 C 0.16 1.28 3.44 -70.19 -0.24 1.04 16 20 H 0.13 0.92 8.14 -51.93 -0.42 0.50 16 21 C -0.10 -0.69 5.88 37.07 0.22 -0.47 16 22 S -0.20 -1.42 22.40 -107.50 -2.41 -3.83 16 23 C -0.11 -0.72 6.61 35.74 0.24 -0.49 16 24 C 0.53 5.08 7.65 -12.57 -0.10 4.98 16 25 O -0.54 -7.10 17.60 5.56 0.10 -7.00 16 26 N -0.70 -6.20 4.63 -57.16 -0.26 -6.47 16 27 H 0.05 0.57 7.22 -51.93 -0.37 0.19 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.06 0.76 6.44 -51.93 -0.33 0.43 16 31 H 0.09 1.35 8.07 -51.93 -0.42 0.93 16 32 H 0.05 1.27 7.42 -51.93 -0.39 0.89 16 33 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 34 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 35 H 0.10 1.24 7.39 -51.93 -0.38 0.86 16 36 H 0.10 1.16 7.18 -51.93 -0.37 0.79 16 37 H 0.10 0.65 8.13 -51.93 -0.42 0.22 16 38 H 0.15 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.15 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.13 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.41 3.87 7.88 -40.82 -0.32 3.55 16 LS Contribution 364.85 15.07 5.50 5.50 Total: -1.00 -34.80 364.85 -7.93 -42.73 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -5.51 Total: 0.12 kcal Atomic # 6 Polarization: 13.20 SS G_CDS: 0.36 Total: 13.55 kcal Atomic # 7 Polarization: -43.46 SS G_CDS: 0.04 Total: -43.42 kcal Atomic # 8 Polarization: -30.01 SS G_CDS: -0.88 Total: -30.89 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -1.42 SS G_CDS: -2.41 Total: -3.83 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.80 -7.93 -42.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923933154.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.688 kcal (2) G-P(sol) polarization free energy of solvation -34.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds