Wall clock time and date at job start Tue Mar 31 2020 05:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47106 * 2 1 4 4 O 1.45205 * 109.46580 * 119.99506 * 2 1 3 5 5 C 1.34231 * 116.99847 * 269.99759 * 4 2 1 6 6 O 1.20821 * 120.00078 * 0.02562 * 5 4 2 7 7 C 1.50704 * 119.99941 * 180.02562 * 5 4 2 8 8 H 1.09005 * 108.86319 * 38.59262 * 7 5 4 9 9 C 1.52820 * 108.89126 * 280.00304 * 7 5 4 10 10 S 1.82038 * 108.22333 * 187.42231 * 9 7 5 11 11 C 1.81851 * 101.23910 * 61.40530 * 10 9 7 12 12 C 1.50141 * 109.06245 * 315.91293 * 11 10 9 13 13 O 1.21285 * 116.82526 * 200.59402 * 12 11 10 14 14 N 1.31768 * 126.34450 * 20.56390 * 12 11 10 15 15 C 1.50693 * 109.47498 * 239.99239 * 2 1 3 16 16 O 1.21278 * 120.00453 * 255.41754 * 15 2 1 17 17 N 1.34784 * 119.99845 * 75.69152 * 15 2 1 18 18 C 1.46498 * 119.99788 * 5.07430 * 17 15 2 19 19 C 1.46498 * 120.00222 * 185.07552 * 17 15 2 20 20 C 1.50697 * 109.47170 * 89.99590 * 19 17 15 21 21 H 1.08001 * 119.99875 * 0.02562 * 20 19 17 22 22 C 1.37880 * 120.00022 * 179.97438 * 20 19 17 23 23 N 1.31514 * 119.99710 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99942 * 180.02562 * 22 20 19 25 25 H 1.48492 * 109.47211 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.46854 * 120.00096 * 24 22 20 27 27 H 1.48498 * 109.46989 * 240.00129 * 24 22 20 28 28 H 1.09000 * 109.47145 * 65.10781 * 1 2 3 29 29 H 1.09006 * 109.47097 * 185.10427 * 1 2 3 30 30 H 1.08995 * 109.47435 * 305.10500 * 1 2 3 31 31 H 1.09002 * 109.71164 * 307.10850 * 9 7 5 32 32 H 1.09005 * 109.71468 * 67.69509 * 9 7 5 33 33 H 1.09007 * 109.53945 * 75.78516 * 11 10 9 34 34 H 1.09001 * 109.53941 * 196.03069 * 11 10 9 35 35 H 0.97005 * 115.07725 * 173.50849 * 14 12 11 36 36 H 1.09000 * 109.47256 * 84.89455 * 18 17 15 37 37 H 1.09000 * 109.47024 * 204.89651 * 18 17 15 38 38 H 1.09007 * 109.47204 * 324.89582 * 18 17 15 39 39 H 1.08990 * 109.47037 * 209.99931 * 19 17 15 40 40 H 1.09007 * 109.46680 * 330.00012 * 19 17 15 41 41 H 0.97007 * 119.99370 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0139 -0.6844 1.1857 5 6 2.2170 0.0642 2.2812 6 8 1.9973 1.2519 2.2505 7 6 2.7191 -0.5767 3.5494 8 1 3.4573 -1.3364 3.2920 9 6 1.5460 -1.2483 4.2624 10 16 2.1227 -1.8221 5.8908 11 6 2.6083 -0.2516 6.6685 12 6 3.3775 0.5703 5.6750 13 8 4.0893 1.4446 6.1222 14 7 3.3550 0.4339 4.3646 15 6 2.0324 -0.7105 -1.2303 16 8 2.4839 -1.8326 -1.1408 17 7 1.9851 -0.0969 -2.4294 18 6 1.5498 1.2989 -2.5213 19 6 2.3690 -0.8257 -3.6409 20 6 1.1568 -1.5057 -4.2233 21 1 0.1965 -1.4048 -3.7396 22 6 1.2736 -2.2560 -5.3742 23 7 2.4430 -2.3785 -5.9634 24 14 -0.2291 -3.0983 -6.0965 25 1 -1.4145 -2.8059 -5.2514 26 1 -0.4661 -2.5931 -7.4727 27 1 -0.0013 -4.5651 -6.1401 28 1 -0.3633 0.4326 -0.9322 29 1 -0.3633 -1.0236 0.0914 30 1 -0.3634 0.5909 0.8407 31 1 0.7350 -0.5315 4.3911 32 1 1.1963 -2.0975 3.6753 33 1 1.7163 0.2926 6.9790 34 1 3.2346 -0.4535 7.5375 35 1 3.8386 1.1154 3.8719 36 1 2.3980 1.9572 -2.3330 37 1 1.1548 1.4914 -3.5188 38 1 0.7727 1.4867 -1.7802 39 1 2.7794 -0.1275 -4.3702 40 1 3.1209 -1.5745 -3.3915 41 1 2.5252 -2.9066 -6.7729 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000923935685.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:21 Heat of formation + Delta-G solvation = -134.719492 kcal Electronic energy + Delta-G solvation = -26238.638821 eV Core-core repulsion = 22246.002936 eV Total energy + Delta-G solvation = -3992.635885 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.113 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.46767 -40.34529 -39.12452 -37.06897 -36.11321 -35.01252 -32.95719 -32.00287 -31.16661 -30.62380 -27.88960 -26.30878 -26.05202 -24.51010 -22.94920 -21.51818 -20.47752 -19.09234 -18.78948 -18.00034 -17.36733 -17.00539 -16.70247 -16.58935 -16.13565 -15.97033 -15.69007 -15.18988 -14.95680 -14.67947 -14.40318 -14.11314 -13.76835 -13.63357 -13.28471 -12.97854 -12.89251 -12.51058 -12.39412 -12.29007 -12.17825 -11.86301 -11.62059 -11.43372 -11.32444 -11.08030 -11.00515 -10.90753 -10.66905 -10.29587 -10.25214 -9.86345 -9.72505 -9.06301 -8.52849 -8.41091 -7.83274 -6.13649 -4.19341 0.78384 1.37255 1.63281 1.93734 2.10815 2.68380 3.09186 3.23834 3.31928 3.34958 3.56427 3.65447 3.82497 4.18498 4.29805 4.35983 4.47947 4.67400 4.78424 4.80269 4.85164 4.91983 4.94840 5.21200 5.37925 5.49293 5.54712 5.75983 5.93585 5.97875 6.07291 6.12710 6.64446 6.87405 7.23339 7.30111 7.38127 7.47319 7.81810 8.10873 8.17224 8.72276 8.88487 9.46179 10.94526 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.024466 B = 0.002497 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.185020 B =11210.882718 C =11660.593336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.070 3.930 3 H 0.105 0.895 4 O -0.316 6.316 5 C 0.453 3.547 6 O -0.493 6.493 7 C 0.157 3.843 8 H 0.131 0.869 9 C -0.101 4.101 10 S -0.201 6.201 11 C -0.110 4.110 12 C 0.532 3.468 13 O -0.537 6.537 14 N -0.698 5.698 15 C 0.510 3.490 16 O -0.519 6.519 17 N -0.594 5.594 18 C 0.072 3.928 19 C 0.245 3.755 20 C -0.531 4.531 21 H 0.059 0.941 22 C 0.062 3.938 23 N -0.892 5.892 24 Si 0.899 3.101 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.282 1.282 28 H 0.090 0.910 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.104 0.896 32 H 0.146 0.854 33 H 0.126 0.874 34 H 0.146 0.854 35 H 0.410 0.590 36 H 0.048 0.952 37 H 0.082 0.918 38 H 0.059 0.941 39 H 0.037 0.963 40 H 0.047 0.953 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.160 5.877 21.051 22.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.012 3.988 3 H 0.123 0.877 4 O -0.230 6.230 5 C 0.292 3.708 6 O -0.380 6.380 7 C 0.048 3.952 8 H 0.148 0.852 9 C -0.250 4.250 10 S 0.027 5.973 11 C -0.261 4.261 12 C 0.317 3.683 13 O -0.415 6.415 14 N -0.352 5.352 15 C 0.293 3.707 16 O -0.394 6.394 17 N -0.328 5.328 18 C -0.072 4.072 19 C 0.126 3.874 20 C -0.569 4.569 21 H 0.077 0.923 22 C -0.141 4.141 23 N -0.531 5.531 24 Si 0.727 3.273 25 H -0.198 1.198 26 H -0.209 1.209 27 H -0.208 1.208 28 H 0.108 0.892 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.123 0.877 32 H 0.164 0.836 33 H 0.144 0.856 34 H 0.164 0.836 35 H 0.247 0.753 36 H 0.067 0.933 37 H 0.101 0.899 38 H 0.077 0.923 39 H 0.055 0.945 40 H 0.065 0.935 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.638 4.718 21.706 22.369 hybrid contribution -0.900 1.148 -1.373 2.003 sum -3.538 5.866 20.333 21.455 Atomic orbital electron populations 1.22187 0.91775 1.04358 1.04009 1.22804 0.96285 0.97435 0.82281 0.87737 1.86614 1.75935 1.41151 1.19305 1.23623 0.75301 0.86102 0.85807 1.90712 1.46991 1.16257 1.84071 1.20409 0.97398 0.91032 0.86348 0.85156 1.23729 0.98469 1.05854 0.96958 1.87537 1.83633 1.12061 1.14103 1.23691 1.04853 0.96400 1.01110 1.19247 0.82362 0.84524 0.82217 1.90857 1.40017 1.34676 1.75903 1.44690 1.53531 1.30574 1.06378 1.19682 0.80436 0.86808 0.83724 1.90709 1.44877 1.18566 1.85282 1.48090 1.64763 1.12269 1.07665 1.21860 0.98926 0.82714 1.03675 1.19399 0.96736 0.92105 0.79125 1.21439 0.94927 1.31264 1.09309 0.92297 1.24945 0.96268 0.96138 0.96709 1.69941 1.23087 1.40384 1.19701 0.86423 0.82658 0.79454 0.78771 1.19774 1.20909 1.20790 0.89177 0.90391 0.91265 0.87739 0.83632 0.85590 0.83627 0.75312 0.93337 0.89943 0.92258 0.94546 0.93498 0.92626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.04 9.20 37.16 0.34 -1.70 16 2 C 0.07 1.03 2.14 -27.88 -0.06 0.97 16 3 H 0.10 1.40 6.34 -51.93 -0.33 1.07 16 4 O -0.32 -4.34 9.46 -45.76 -0.43 -4.77 16 5 C 0.45 5.05 6.97 36.01 0.25 5.30 16 6 O -0.49 -6.34 15.49 -18.75 -0.29 -6.64 16 7 C 0.16 1.29 3.44 -70.20 -0.24 1.05 16 8 H 0.13 0.95 8.14 -51.93 -0.42 0.53 16 9 C -0.10 -0.66 5.89 37.07 0.22 -0.45 16 10 S -0.20 -1.40 22.40 -107.50 -2.41 -3.80 16 11 C -0.11 -0.71 6.61 35.74 0.24 -0.48 16 12 C 0.53 5.10 7.65 -12.58 -0.10 5.01 16 13 O -0.54 -7.14 17.60 5.55 0.10 -7.04 16 14 N -0.70 -6.29 4.63 -57.16 -0.26 -6.56 16 15 C 0.51 10.11 6.96 -10.99 -0.08 10.03 16 16 O -0.52 -12.57 16.13 -13.58 -0.22 -12.79 16 17 N -0.59 -11.90 2.86 -182.96 -0.52 -12.43 16 18 C 0.07 1.06 9.80 59.85 0.59 1.64 16 19 C 0.24 6.13 5.18 -5.20 -0.03 6.11 16 20 C -0.53 -14.37 9.39 -34.44 -0.32 -14.69 16 21 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 22 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 23 N -0.89 -25.77 13.29 55.43 0.74 -25.03 16 24 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 25 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 27 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 28 H 0.09 1.08 6.24 -51.93 -0.32 0.75 16 29 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.10 0.62 8.13 -51.93 -0.42 0.20 16 32 H 0.15 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.13 0.62 8.14 -51.92 -0.42 0.19 16 34 H 0.15 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.41 3.97 7.91 -40.82 -0.32 3.65 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.08 1.22 8.03 -51.93 -0.42 0.81 16 38 H 0.06 0.71 4.86 -51.92 -0.25 0.45 16 39 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 40 H 0.05 1.33 7.36 -51.92 -0.38 0.95 16 41 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 361.46 15.07 5.45 5.45 Total: -1.00 -34.88 361.46 -7.54 -42.42 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -5.37 Total: 0.73 kcal Atomic # 6 Polarization: 13.69 SS G_CDS: 0.71 Total: 14.40 kcal Atomic # 7 Polarization: -43.96 SS G_CDS: -0.05 Total: -44.01 kcal Atomic # 8 Polarization: -30.39 SS G_CDS: -0.84 Total: -31.24 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: -1.40 SS G_CDS: -2.41 Total: -3.80 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.88 -7.54 -42.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923935685.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.303 kcal (2) G-P(sol) polarization free energy of solvation -34.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds