Wall clock time and date at job start Tue Mar 31 2020 05:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09003 * 109.47333 * 2 1 4 4 O 1.45200 * 109.47203 * 239.99857 * 2 1 3 5 5 C 1.34227 * 116.99968 * 89.99792 * 4 2 1 6 6 O 1.20822 * 120.00230 * 0.02562 * 5 4 2 7 7 C 1.50701 * 119.99772 * 179.97438 * 5 4 2 8 8 H 1.09004 * 108.78818 * 41.46081 * 7 5 4 9 9 C 1.52826 * 108.89328 * 282.91842 * 7 5 4 10 10 S 1.82049 * 108.22261 * 187.42716 * 9 7 5 11 11 C 1.81853 * 101.22980 * 61.41818 * 10 9 7 12 12 C 1.50146 * 109.06223 * 315.89426 * 11 10 9 13 13 O 1.21281 * 116.82465 * 200.59410 * 12 11 10 14 14 N 1.31763 * 126.34144 * 20.57258 * 12 11 10 15 15 C 1.50698 * 109.47469 * 119.99692 * 2 1 3 16 16 O 1.21282 * 120.00154 * 119.99841 * 15 2 1 17 17 N 1.34777 * 119.99900 * 300.00139 * 15 2 1 18 18 C 1.46503 * 120.00287 * 359.97438 * 17 15 2 19 19 C 1.46504 * 119.99846 * 179.97438 * 17 15 2 20 20 C 1.50704 * 109.46989 * 90.00481 * 19 17 15 21 21 H 1.07995 * 120.00102 * 359.97438 * 20 19 17 22 22 C 1.37878 * 119.99973 * 179.97438 * 20 19 17 23 23 N 1.31520 * 120.00036 * 359.97438 * 22 20 19 24 24 Si 1.86792 * 120.00018 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47114 * 90.00340 * 24 22 20 26 26 H 1.48504 * 109.47273 * 209.99602 * 24 22 20 27 27 H 1.48497 * 109.47485 * 329.99938 * 24 22 20 28 28 H 1.09007 * 109.47421 * 299.99918 * 1 2 3 29 29 H 1.08993 * 109.47729 * 59.99916 * 1 2 3 30 30 H 1.09003 * 109.47185 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.71237 * 307.10884 * 9 7 5 32 32 H 1.09001 * 109.71215 * 67.69908 * 9 7 5 33 33 H 1.08995 * 109.53792 * 196.02198 * 11 10 9 34 34 H 1.08997 * 109.53574 * 75.77268 * 11 10 9 35 35 H 0.97002 * 115.07932 * 173.50459 * 14 12 11 36 36 H 1.08999 * 109.46723 * 89.99747 * 18 17 15 37 37 H 1.08998 * 109.47084 * 210.00313 * 18 17 15 38 38 H 1.09002 * 109.46981 * 329.99988 * 18 17 15 39 39 H 1.08999 * 109.46884 * 209.99821 * 19 17 15 40 40 H 1.08996 * 109.47594 * 330.00176 * 19 17 15 41 41 H 0.96994 * 120.00158 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0139 -0.6845 -1.1855 5 6 2.2170 0.0639 -2.2811 6 8 1.9981 1.2518 -2.2504 7 6 2.7192 -0.5772 -3.5491 8 1 2.2058 -1.5285 -3.6887 9 6 4.2184 -0.8397 -3.4107 10 16 4.8484 -1.4056 -5.0223 11 6 4.4841 0.0350 -6.0706 12 6 3.0992 0.5272 -5.7636 13 8 2.5612 1.2104 -6.6090 14 7 2.4114 0.2889 -4.6653 15 6 2.0323 -0.7103 1.2305 16 8 2.7296 -1.6964 1.1192 17 7 1.7067 -0.2498 2.4545 18 6 0.8649 0.9416 2.5890 19 6 2.1947 -0.9407 3.6507 20 6 3.5224 -0.3576 4.0611 21 1 3.9592 0.4468 3.4880 22 6 4.1794 -0.8510 5.1683 23 7 3.6473 -1.8303 5.8666 24 14 5.8254 -0.1288 5.6766 25 1 5.6021 0.9969 6.6191 26 1 6.6416 -1.1763 6.3413 27 1 6.5410 0.3673 4.4737 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 4.7272 0.0791 -3.1191 32 1 4.3889 -1.6092 -2.6578 33 1 4.5442 -0.2533 -7.1200 34 1 5.2058 0.8260 -5.8666 35 1 1.5708 0.7676 -4.5945 36 1 -0.1832 0.6440 2.6222 37 1 1.1228 1.4669 3.5086 38 1 1.0287 1.6004 1.7361 39 1 1.4767 -0.8150 4.4611 40 1 2.3155 -2.0019 3.4336 41 1 4.1093 -2.1772 6.6456 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000923935688.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:25 Heat of formation + Delta-G solvation = -131.128068 kcal Electronic energy + Delta-G solvation = -26324.586318 eV Core-core repulsion = 22332.106169 eV Total energy + Delta-G solvation = -3992.480149 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.113 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.45159 -40.33577 -39.15206 -37.04867 -36.08842 -35.08304 -33.04772 -31.96162 -31.09445 -30.58175 -27.78555 -26.47575 -26.02385 -24.42637 -22.94320 -21.55893 -20.44243 -19.13470 -18.73708 -17.95450 -17.33838 -17.13519 -16.61190 -16.46309 -16.20589 -15.96059 -15.69728 -15.27599 -14.82598 -14.68028 -14.38432 -13.96371 -13.70842 -13.67569 -13.36282 -13.10546 -12.78965 -12.56631 -12.33175 -12.31355 -12.21528 -11.82765 -11.53673 -11.38475 -11.25010 -11.04135 -11.00156 -10.92069 -10.66100 -10.25408 -10.24615 -9.85323 -9.74116 -9.06554 -8.52351 -8.34623 -7.84901 -6.13520 -4.18978 0.85187 1.40806 1.71779 1.93276 2.12510 2.70860 3.10974 3.24579 3.31829 3.35791 3.61600 3.65258 3.86830 4.22510 4.31013 4.36893 4.53114 4.66245 4.80350 4.84775 4.85909 4.91420 5.07897 5.21285 5.34246 5.48928 5.50106 5.71768 5.84194 5.99226 6.08530 6.11068 6.65857 6.86278 7.24651 7.28545 7.36999 7.49064 7.81844 8.10959 8.16330 8.72292 8.88348 9.46478 10.94645 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.016421 B = 0.002854 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.740909 B = 9808.849031 C =10821.289242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.070 3.930 3 H 0.108 0.892 4 O -0.315 6.315 5 C 0.454 3.546 6 O -0.493 6.493 7 C 0.159 3.841 8 H 0.130 0.870 9 C -0.103 4.103 10 S -0.201 6.201 11 C -0.111 4.111 12 C 0.532 3.468 13 O -0.538 6.538 14 N -0.698 5.698 15 C 0.509 3.491 16 O -0.519 6.519 17 N -0.594 5.594 18 C 0.074 3.926 19 C 0.247 3.753 20 C -0.531 4.531 21 H 0.057 0.943 22 C 0.062 3.938 23 N -0.893 5.893 24 Si 0.899 3.101 25 H -0.280 1.280 26 H -0.284 1.284 27 H -0.274 1.274 28 H 0.096 0.904 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.105 0.895 32 H 0.149 0.851 33 H 0.146 0.854 34 H 0.126 0.874 35 H 0.409 0.591 36 H 0.053 0.947 37 H 0.079 0.921 38 H 0.058 0.942 39 H 0.037 0.963 40 H 0.046 0.954 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.254 3.663 -18.853 19.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.012 3.988 3 H 0.126 0.874 4 O -0.229 6.229 5 C 0.292 3.708 6 O -0.381 6.381 7 C 0.050 3.950 8 H 0.147 0.853 9 C -0.251 4.251 10 S 0.027 5.973 11 C -0.262 4.262 12 C 0.317 3.683 13 O -0.416 6.416 14 N -0.352 5.352 15 C 0.293 3.707 16 O -0.394 6.394 17 N -0.327 5.327 18 C -0.069 4.069 19 C 0.128 3.872 20 C -0.570 4.570 21 H 0.076 0.924 22 C -0.140 4.140 23 N -0.532 5.532 24 Si 0.727 3.273 25 H -0.206 1.206 26 H -0.210 1.210 27 H -0.199 1.199 28 H 0.114 0.886 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.123 0.877 32 H 0.167 0.833 33 H 0.163 0.837 34 H 0.144 0.856 35 H 0.246 0.754 36 H 0.071 0.929 37 H 0.098 0.902 38 H 0.077 0.923 39 H 0.055 0.945 40 H 0.064 0.936 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.418 2.568 -19.439 19.903 hybrid contribution 0.068 1.907 0.986 2.148 sum -3.350 4.475 -18.452 19.280 Atomic orbital electron populations 1.22419 0.92087 1.04359 1.04519 1.22743 0.95928 0.97714 0.82449 0.87432 1.86586 1.75962 1.41056 1.19336 1.23620 0.75053 0.86095 0.86007 1.90713 1.47369 1.16084 1.83894 1.20388 0.97367 0.95008 0.82227 0.85267 1.23763 0.93560 1.08190 0.99619 1.87528 1.81285 1.23750 1.04762 1.23691 0.96356 1.00740 1.05404 1.19259 0.87607 0.80208 0.81185 1.90848 1.67831 1.39447 1.43447 1.44691 1.25673 1.46934 1.17882 1.19694 0.81840 0.85443 0.83767 1.90715 1.36958 1.25931 1.85820 1.48071 1.49709 1.28292 1.06636 1.21906 0.94018 0.87993 1.03014 1.19378 0.94436 0.93753 0.79621 1.21403 1.04846 1.19310 1.11423 0.92426 1.24931 0.98015 0.94870 0.96183 1.69923 1.39099 1.25914 1.18242 0.86480 0.83488 0.78725 0.78640 1.20575 1.20980 1.19887 0.88606 0.91314 0.90738 0.87683 0.83300 0.83652 0.85574 0.75386 0.92892 0.90184 0.92319 0.94521 0.93558 0.92575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.98 9.18 37.15 0.34 -1.63 16 2 C 0.07 1.02 2.18 -27.89 -0.06 0.96 16 3 H 0.11 1.51 6.41 -51.93 -0.33 1.18 16 4 O -0.32 -4.37 9.41 -45.90 -0.43 -4.80 16 5 C 0.45 5.23 7.01 36.01 0.25 5.48 16 6 O -0.49 -6.60 15.41 -18.75 -0.29 -6.89 16 7 C 0.16 1.36 3.44 -70.19 -0.24 1.12 16 8 H 0.13 0.88 8.14 -51.93 -0.42 0.45 16 9 C -0.10 -0.84 5.89 37.07 0.22 -0.62 16 10 S -0.20 -1.60 22.40 -107.50 -2.41 -4.01 16 11 C -0.11 -0.80 6.61 35.74 0.24 -0.57 16 12 C 0.53 5.28 7.65 -12.58 -0.10 5.19 16 13 O -0.54 -7.22 17.60 5.56 0.10 -7.12 16 14 N -0.70 -6.36 4.64 -57.16 -0.27 -6.63 16 15 C 0.51 9.99 7.15 -10.99 -0.08 9.92 16 16 O -0.52 -12.46 16.08 -14.11 -0.23 -12.69 16 17 N -0.59 -11.73 2.86 -182.95 -0.52 -12.25 16 18 C 0.07 1.06 8.80 59.85 0.53 1.58 16 19 C 0.25 6.13 5.16 -5.19 -0.03 6.10 16 20 C -0.53 -14.51 9.39 -34.44 -0.32 -14.83 16 21 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 22 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 23 N -0.89 -25.75 13.29 55.43 0.74 -25.01 16 24 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 27 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 28 H 0.10 0.95 4.53 -51.92 -0.24 0.72 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.10 0.86 8.13 -51.93 -0.42 0.44 16 32 H 0.15 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.15 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.13 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.41 3.85 7.86 -40.82 -0.32 3.53 16 36 H 0.05 0.61 6.95 -51.93 -0.36 0.25 16 37 H 0.08 1.18 8.07 -51.93 -0.42 0.76 16 38 H 0.06 0.69 6.01 -51.93 -0.31 0.38 16 39 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 40 H 0.05 1.30 7.42 -51.93 -0.39 0.91 16 41 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 358.90 15.07 5.41 5.41 Total: -1.00 -34.87 358.90 -7.56 -42.43 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -5.29 Total: 0.98 kcal Atomic # 6 Polarization: 13.68 SS G_CDS: 0.65 Total: 14.33 kcal Atomic # 7 Polarization: -43.84 SS G_CDS: -0.05 Total: -43.89 kcal Atomic # 8 Polarization: -30.65 SS G_CDS: -0.85 Total: -31.50 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.41 Total: -4.01 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.87 -7.56 -42.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923935688.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.694 kcal (2) G-P(sol) polarization free energy of solvation -34.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds