Wall clock time and date at job start Tue Mar 31 2020 05:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00076 * 2 1 4 4 H 1.48503 * 109.46845 * 269.99936 * 3 2 1 5 5 H 1.48503 * 109.47399 * 29.99425 * 3 2 1 6 6 H 1.48498 * 109.47295 * 150.00032 * 3 2 1 7 7 C 1.38813 * 120.00240 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00268 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99472 * 359.97438 * 7 2 1 10 10 C 1.46510 * 119.99776 * 179.97438 * 9 7 2 11 11 H 1.08995 * 112.84524 * 25.33942 * 10 9 7 12 12 C 1.53784 * 113.61280 * 156.53081 * 10 9 7 13 13 C 1.53782 * 87.07645 * 139.98414 * 12 10 9 14 14 H 1.08994 * 113.61613 * 89.19904 * 13 12 10 15 15 N 1.46499 * 113.61225 * 220.01829 * 13 12 10 16 16 C 1.34781 * 120.00080 * 205.00412 * 15 13 12 17 17 O 1.21554 * 120.00032 * 359.97438 * 16 15 13 18 18 C 1.47833 * 120.00158 * 180.02562 * 16 15 13 19 19 C 1.39953 * 120.93625 * 359.71873 * 18 16 15 20 20 N 1.32151 * 118.92164 * 179.71795 * 19 18 16 21 21 C 1.31873 * 120.96360 * 0.56504 * 20 19 18 22 22 C 1.50697 * 118.95118 * 179.67668 * 21 20 19 23 23 F 1.39896 * 109.47514 * 285.03066 * 22 21 20 24 24 F 1.39904 * 109.47021 * 45.02752 * 22 21 20 25 25 F 1.39897 * 109.47396 * 165.02449 * 22 21 20 26 26 N 1.31869 * 122.09882 * 359.70707 * 21 20 19 27 27 C 1.32148 * 120.96689 * 359.97438 * 26 21 20 28 28 C 1.53774 * 113.61555 * 254.14272 * 10 9 7 29 29 H 0.97000 * 119.99789 * 179.97438 * 1 2 3 30 30 H 0.96998 * 120.00801 * 0.02562 * 9 7 2 31 31 H 1.08989 * 113.61212 * 254.53285 * 12 10 9 32 32 H 1.08999 * 113.61352 * 25.35235 * 12 10 9 33 33 H 0.97000 * 120.00301 * 25.00661 * 15 13 12 34 34 H 1.07997 * 120.53875 * 359.97438 * 19 18 16 35 35 H 1.08003 * 120.53942 * 179.97438 * 27 26 21 36 36 H 1.09002 * 113.61627 * 334.56557 * 28 10 9 37 37 H 1.08999 * 113.61596 * 105.47326 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6528 0.6999 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 2.0581 -3.6568 0.0016 11 1 3.0562 -3.5692 0.4307 12 6 1.2472 -4.8363 0.5639 13 6 1.8602 -5.6905 -0.5583 14 1 2.8041 -6.1610 -0.2829 15 7 0.9130 -6.6285 -1.1658 16 6 1.3640 -7.7483 -1.7651 17 8 2.5568 -7.9797 -1.8020 18 6 0.4082 -8.6946 -2.3787 19 6 -0.9693 -8.4501 -2.3435 20 7 -1.7875 -9.3199 -2.9095 21 6 -1.3236 -10.4090 -3.4905 22 6 -2.2979 -11.3739 -4.1155 23 9 -2.9473 -12.0980 -3.1099 24 9 -3.2433 -10.6634 -4.8630 25 9 -1.6079 -12.2560 -4.9539 26 7 -0.0342 -10.6810 -3.5416 27 6 0.8550 -9.8629 -3.0065 28 6 2.0316 -4.3834 -1.3534 29 1 -0.4850 -0.8401 -0.0004 30 1 0.3556 -2.3881 0.0016 31 1 1.5563 -5.1415 1.5635 32 1 0.1686 -4.7060 0.4757 33 1 -0.0388 -6.4437 -1.1368 34 1 -1.3571 -7.5628 -1.8652 35 1 1.9093 -10.0926 -3.0520 36 1 1.1679 -4.1298 -1.9681 37 1 2.9732 -4.3237 -1.8993 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022252668.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:12 Heat of formation + Delta-G solvation = -92.719638 kcal Electronic energy + Delta-G solvation = -26749.094519 eV Core-core repulsion = 22113.271944 eV Total energy + Delta-G solvation = -4635.822575 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.104 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.67541 -48.19790 -48.15354 -42.07385 -40.08036 -38.24881 -35.02522 -34.44269 -33.79276 -32.79048 -29.78927 -28.30746 -25.58259 -25.39228 -24.82895 -23.95427 -22.62587 -21.14319 -19.80555 -19.64468 -19.32756 -19.10826 -18.24330 -17.92998 -17.42466 -16.34678 -15.99944 -15.99326 -15.29399 -15.11307 -14.98378 -14.88721 -14.69942 -14.55892 -14.31395 -14.28270 -14.25763 -14.02060 -13.75113 -13.38843 -13.10845 -12.50932 -12.34982 -12.18196 -11.79320 -11.18238 -11.05005 -10.84982 -10.64942 -10.60915 -10.45655 -10.26201 -10.24091 -10.05896 -9.29111 -9.16012 -8.97993 -7.16656 -6.21690 -3.22836 -0.62033 0.17350 1.56669 2.12894 2.61661 2.80845 2.89067 2.92047 3.46563 3.50537 3.58295 3.64669 3.76688 3.82216 3.87786 3.97774 4.21974 4.59126 4.74847 4.90053 4.94188 5.09324 5.27278 5.34864 5.58243 5.69038 5.81812 5.87944 5.98557 6.04526 6.10702 6.38445 6.43842 6.78012 6.87578 7.13142 7.71076 7.72297 8.63944 9.08802 9.95284 10.08873 11.26277 Molecular weight = 330.10amu Principal moments of inertia in cm(-1) A = 0.024643 B = 0.002021 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.934883 B =13853.804222 C =14506.425020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.043 4.043 3 Si 1.083 2.917 4 H -0.295 1.295 5 H -0.287 1.287 6 H -0.294 1.294 7 C -0.338 4.338 8 H 0.067 0.933 9 N -0.721 5.721 10 C 0.175 3.825 11 H 0.082 0.918 12 C -0.160 4.160 13 C 0.117 3.883 14 H 0.116 0.884 15 N -0.701 5.701 16 C 0.565 3.435 17 O -0.523 6.523 18 C -0.206 4.206 19 C 0.188 3.812 20 N -0.477 5.477 21 C 0.252 3.748 22 C 0.548 3.452 23 F -0.161 7.161 24 F -0.157 7.157 25 F -0.153 7.153 26 N -0.478 5.478 27 C 0.213 3.787 28 C -0.176 4.176 29 H 0.255 0.745 30 H 0.368 0.632 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.399 0.601 34 H 0.188 0.812 35 H 0.199 0.801 36 H 0.079 0.921 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.119 -23.547 -5.580 24.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.241 4.241 3 Si 0.913 3.087 4 H -0.222 1.222 5 H -0.213 1.213 6 H -0.220 1.220 7 C -0.469 4.469 8 H 0.085 0.915 9 N -0.360 5.360 10 C 0.062 3.938 11 H 0.100 0.900 12 C -0.200 4.200 13 C 0.013 3.987 14 H 0.134 0.866 15 N -0.351 5.351 16 C 0.348 3.652 17 O -0.400 6.400 18 C -0.213 4.213 19 C 0.022 3.978 20 N -0.190 5.190 21 C -0.019 4.019 22 C 0.491 3.509 23 F -0.142 7.142 24 F -0.138 7.138 25 F -0.134 7.134 26 N -0.191 5.191 27 C 0.047 3.953 28 C -0.218 4.218 29 H 0.066 0.934 30 H 0.202 0.798 31 H 0.089 0.911 32 H 0.100 0.900 33 H 0.235 0.765 34 H 0.205 0.795 35 H 0.215 0.785 36 H 0.098 0.902 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.856 -22.628 -5.997 23.582 hybrid contribution -0.222 -1.153 0.210 1.193 sum -3.077 -23.781 -5.787 24.668 Atomic orbital electron populations 1.70876 1.06087 1.28425 1.53281 1.25820 0.97020 1.01166 1.00067 0.83197 0.73933 0.75219 0.76336 1.22220 1.21325 1.22033 1.20128 0.92199 0.85729 1.48823 0.91461 1.42362 1.04701 1.00752 1.88234 1.21274 0.95488 0.84457 0.92574 0.89988 1.23884 1.01065 0.97350 0.97655 1.22685 0.93298 0.87400 0.95285 0.86649 1.45997 1.11021 1.21579 1.56487 1.17636 0.87513 0.81181 0.78848 1.90830 1.15479 1.75296 1.58366 1.22196 0.96475 0.99383 1.03249 1.23628 0.88327 0.96200 0.89681 1.68024 1.40286 1.02268 1.08423 1.22867 0.90421 0.92661 0.95963 1.17064 0.78612 0.78665 0.76540 1.93276 1.82034 1.78433 1.60457 1.93285 1.65572 1.78149 1.76764 1.93282 1.79091 1.69396 1.71617 1.68171 1.01387 1.32071 1.17434 1.23657 1.00620 0.86043 0.85029 1.24394 1.02093 0.94546 1.00813 0.93395 0.79823 0.91064 0.89967 0.76539 0.79502 0.78470 0.90202 0.91810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.06 13.70 55.49 0.76 -27.30 16 2 C -0.04 -1.20 5.50 -17.43 -0.10 -1.30 16 3 Si 1.08 25.14 29.92 -169.99 -5.09 20.05 16 4 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16 7 C -0.34 -9.07 9.97 -15.06 -0.15 -9.22 16 8 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 9 N -0.72 -16.73 5.41 -52.64 -0.28 -17.01 16 10 C 0.17 3.11 4.47 -67.11 -0.30 2.81 16 11 H 0.08 1.49 8.11 -51.93 -0.42 1.07 16 12 C -0.16 -2.15 7.58 -25.92 -0.20 -2.34 16 13 C 0.12 1.46 4.24 -67.03 -0.28 1.17 16 14 H 0.12 1.49 7.46 -51.93 -0.39 1.11 16 15 N -0.70 -6.90 5.32 -53.88 -0.29 -7.19 16 16 C 0.56 5.98 7.79 -12.33 -0.10 5.88 16 17 O -0.52 -7.22 16.05 5.32 0.09 -7.14 16 18 C -0.21 -1.76 5.91 -104.69 -0.62 -2.38 16 19 C 0.19 1.42 10.81 -16.77 -0.18 1.24 16 20 N -0.48 -4.52 10.19 -10.39 -0.11 -4.63 16 21 C 0.25 2.50 7.09 -157.07 -1.11 1.39 16 22 C 0.55 5.15 3.49 36.00 0.13 5.27 16 23 F -0.16 -1.51 17.30 2.25 0.04 -1.47 16 24 F -0.16 -1.51 17.19 2.25 0.04 -1.47 16 25 F -0.15 -1.45 16.86 2.25 0.04 -1.41 16 26 N -0.48 -4.66 9.81 -10.39 -0.10 -4.77 16 27 C 0.21 1.83 10.88 -16.78 -0.18 1.65 16 28 C -0.18 -2.73 7.69 -25.83 -0.20 -2.93 16 29 H 0.25 7.39 6.77 -40.82 -0.28 7.11 16 30 H 0.37 8.72 6.74 -40.82 -0.28 8.44 16 31 H 0.07 0.90 8.14 -51.94 -0.42 0.47 16 32 H 0.08 1.06 8.09 -51.93 -0.42 0.64 16 33 H 0.40 2.88 6.87 -40.82 -0.28 2.60 16 34 H 0.19 0.81 6.54 -52.49 -0.34 0.47 16 35 H 0.20 1.37 7.74 -52.48 -0.41 0.96 16 36 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 339.05 15.07 5.11 5.11 Total: -1.00 -32.54 339.05 -6.37 -38.91 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -3.28 Total: 7.05 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: -3.29 Total: 1.26 kcal Atomic # 7 Polarization: -60.89 SS G_CDS: -0.02 Total: -60.90 kcal Atomic # 8 Polarization: -7.22 SS G_CDS: 0.09 Total: -7.14 kcal Atomic # 9 Polarization: -4.46 SS G_CDS: 0.12 Total: -4.34 kcal Atomic # 14 Polarization: 25.14 SS G_CDS: -5.09 Total: 20.05 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.54 -6.37 -38.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022252668.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.805 kcal (2) G-P(sol) polarization free energy of solvation -32.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds