Wall clock time and date at job start Tue Mar 31 2020 05:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00144 * 2 1 4 4 H 1.48506 * 109.47100 * 274.98266 * 3 2 1 5 5 H 1.48504 * 109.47328 * 34.98214 * 3 2 1 6 6 H 1.48506 * 109.47573 * 154.98330 * 3 2 1 7 7 C 1.38812 * 119.99955 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99965 * 185.01469 * 7 2 1 9 9 N 1.36934 * 120.00127 * 4.73743 * 7 2 1 10 10 C 1.47067 * 136.05759 * 353.46560 * 9 7 2 11 11 C 1.53230 * 88.08449 * 207.20299 * 10 9 7 12 12 C 1.47069 * 136.06002 * 173.82955 * 9 7 2 13 13 H 1.09001 * 113.46634 * 267.68739 * 12 9 7 14 14 C 1.52995 * 113.46478 * 38.06733 * 12 9 7 15 15 N 1.46498 * 109.47385 * 285.49525 * 14 12 9 16 16 C 1.34775 * 120.00150 * 180.02562 * 15 14 12 17 17 O 1.21554 * 120.00323 * 0.02562 * 16 15 14 18 18 C 1.47836 * 120.00093 * 179.97438 * 16 15 14 19 19 C 1.39947 * 120.93685 * 359.72983 * 18 16 15 20 20 N 1.32144 * 118.92364 * 179.71743 * 19 18 16 21 21 C 1.31877 * 120.96665 * 0.55870 * 20 19 18 22 22 C 1.50697 * 118.95020 * 179.72951 * 21 20 19 23 23 F 1.39900 * 109.47141 * 284.97242 * 22 21 20 24 24 F 1.39892 * 109.47604 * 44.98076 * 22 21 20 25 25 F 1.39907 * 109.46560 * 164.97991 * 22 21 20 26 26 N 1.31872 * 122.09222 * 359.71003 * 21 20 19 27 27 C 1.32139 * 120.96805 * 359.97438 * 26 21 20 28 28 H 0.96997 * 119.99594 * 0.02562 * 1 2 3 29 29 H 1.09009 * 113.46531 * 321.93389 * 10 9 7 30 30 H 1.09005 * 113.46959 * 92.37048 * 10 9 7 31 31 H 1.09008 * 114.32688 * 220.47259 * 11 10 9 32 32 H 1.08996 * 114.02185 * 87.71580 * 11 10 9 33 33 H 1.09007 * 109.47409 * 45.49625 * 14 12 9 34 34 H 1.09000 * 109.46920 * 165.49267 * 14 12 9 35 35 H 0.96997 * 119.99929 * 0.02562 * 15 14 12 36 36 H 1.08000 * 120.53896 * 359.96343 * 19 18 16 37 37 H 1.07998 * 120.53803 * 179.97438 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3924 2.1072 -1.3948 5 1 1.5043 2.6200 0.8027 6 1 3.5965 1.4121 0.5921 7 6 2.0103 -1.2021 0.0005 8 1 3.0871 -1.2039 0.0823 9 7 1.3291 -2.3861 -0.0969 10 6 -0.0825 -2.7986 -0.0986 11 6 0.3660 -4.1531 0.4600 12 6 1.6874 -3.8053 -0.2394 13 1 1.7322 -4.1397 -1.2759 14 6 2.9260 -4.2047 0.5650 15 7 4.1259 -3.6862 -0.0964 16 6 5.3422 -3.9173 0.4363 17 8 5.4436 -4.5565 1.4653 18 6 6.5531 -3.3945 -0.2314 19 6 6.4597 -2.6621 -1.4202 20 7 7.5674 -2.2087 -1.9802 21 6 8.7471 -2.4470 -1.4410 22 6 9.9813 -1.9135 -2.1214 23 9 10.2613 -2.6870 -3.2530 24 9 9.7651 -0.5859 -2.5058 25 9 11.0637 -1.9725 -1.2368 26 7 8.8809 -3.1371 -0.3252 27 6 7.8256 -3.6225 0.3047 28 1 -0.4849 0.8401 -0.0004 29 1 -0.7021 -2.2287 0.5941 30 1 -0.5150 -2.8623 -1.0971 31 1 -0.1543 -5.0099 0.0317 32 1 0.4308 -4.1851 1.5475 33 1 2.8564 -3.7884 1.5700 34 1 2.9852 -5.2914 0.6252 35 1 4.0451 -3.1764 -0.9177 36 1 5.4976 -2.4670 -1.8705 37 1 7.9433 -4.1870 1.2179 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038382998.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:30 Heat of formation + Delta-G solvation = -67.787460 kcal Electronic energy + Delta-G solvation = -27689.727340 eV Core-core repulsion = 23054.985906 eV Total energy + Delta-G solvation = -4634.741435 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.104 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.50022 -48.02387 -47.97764 -41.80749 -39.57644 -38.23614 -34.86995 -34.18505 -33.30956 -32.34324 -28.84717 -28.09890 -27.25815 -25.22319 -24.08353 -23.60380 -22.22294 -20.97747 -19.45998 -19.44229 -19.10595 -18.93170 -18.20437 -17.74489 -16.69843 -15.86665 -15.78834 -15.66230 -15.34008 -14.84134 -14.78823 -14.68298 -14.53970 -14.38728 -14.14614 -14.11153 -14.08484 -13.92107 -13.51255 -13.18773 -13.04698 -12.10987 -12.10730 -11.69793 -11.53666 -11.24545 -11.12207 -10.89571 -10.69626 -10.36562 -10.29886 -10.01228 -9.99658 -9.96652 -9.41364 -8.96994 -8.87783 -7.02806 -5.91568 -3.24315 -0.35644 0.42751 1.77537 2.41476 2.92407 3.00542 3.12676 3.21666 3.29136 3.34147 3.37283 3.86194 3.95648 4.07732 4.11485 4.24484 4.30496 4.54666 5.03764 5.19425 5.24075 5.42124 5.49385 5.55439 5.74731 5.89432 6.11510 6.16120 6.24944 6.42231 6.48900 6.62373 7.09685 7.11755 7.25030 7.43158 7.45263 7.82937 8.04579 8.88098 9.56448 10.49161 11.25832 Molecular weight = 330.10amu Principal moments of inertia in cm(-1) A = 0.013303 B = 0.003384 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.273257 B = 8271.195426 C = 9714.881702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.001 4.001 3 Si 0.904 3.096 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.281 1.281 7 C -0.223 4.223 8 H 0.079 0.921 9 N -0.602 5.602 10 C 0.154 3.846 11 C -0.161 4.161 12 C 0.125 3.875 13 H 0.050 0.950 14 C 0.120 3.880 15 N -0.699 5.699 16 C 0.561 3.439 17 O -0.531 6.531 18 C -0.201 4.201 19 C 0.190 3.810 20 N -0.476 5.476 21 C 0.248 3.752 22 C 0.548 3.452 23 F -0.162 7.162 24 F -0.157 7.157 25 F -0.154 7.154 26 N -0.480 5.480 27 C 0.210 3.790 28 H 0.255 0.745 29 H 0.068 0.932 30 H 0.028 0.972 31 H 0.060 0.940 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.066 0.934 35 H 0.404 0.596 36 H 0.190 0.810 37 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.684 -8.508 -3.596 16.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.199 4.199 3 Si 0.734 3.266 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.207 1.207 7 C -0.350 4.350 8 H 0.097 0.903 9 N -0.328 5.328 10 C 0.029 3.971 11 C -0.200 4.200 12 C 0.017 3.983 13 H 0.068 0.932 14 C -0.004 4.004 15 N -0.349 5.349 16 C 0.345 3.655 17 O -0.409 6.409 18 C -0.209 4.209 19 C 0.024 3.976 20 N -0.190 5.190 21 C -0.023 4.023 22 C 0.492 3.508 23 F -0.143 7.143 24 F -0.138 7.138 25 F -0.135 7.135 26 N -0.193 5.193 27 C 0.044 3.956 28 H 0.065 0.935 29 H 0.086 0.914 30 H 0.046 0.954 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.240 0.760 36 H 0.207 0.793 37 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 14.595 -8.204 -3.299 17.064 hybrid contribution -0.254 1.101 -0.256 1.158 sum 14.340 -7.103 -3.555 16.393 Atomic orbital electron populations 1.69838 1.05042 1.25528 1.55379 1.24802 0.95614 0.97457 1.01996 0.86235 0.78779 0.83880 0.77675 1.21410 1.21536 1.20657 1.18775 0.90368 0.81396 1.44432 0.90325 1.45644 1.02648 0.99718 1.84764 1.21924 0.88535 0.89108 0.97581 1.23633 0.96813 0.99085 1.00445 1.22450 0.91767 0.87808 0.96258 0.93249 1.21984 0.82765 0.97775 0.97885 1.45919 1.05694 1.54788 1.28452 1.17587 0.82684 0.80686 0.84566 1.90802 1.86438 1.40463 1.23211 1.22214 0.97709 1.02302 0.98643 1.23701 0.97354 0.87019 0.89570 1.68023 0.98014 1.19667 1.33250 1.22826 0.92669 0.95406 0.91402 1.17067 0.81213 0.76035 0.76522 1.93266 1.93990 1.75016 1.52048 1.93281 1.94669 1.34596 1.91227 1.93275 1.55985 1.96030 1.68218 1.68137 1.34764 1.09153 1.07233 1.23605 0.85200 0.89782 0.97037 0.93499 0.91369 0.95444 0.92165 0.90147 0.90503 0.91575 0.76049 0.79303 0.78576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.60 11.63 55.49 0.65 -24.95 16 2 C 0.00 -0.02 5.50 -17.43 -0.10 -0.12 16 3 Si 0.90 21.05 29.56 -169.99 -5.02 16.02 16 4 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 7 C -0.22 -5.54 10.54 -15.06 -0.16 -5.70 16 8 H 0.08 1.85 7.61 -52.49 -0.40 1.45 16 9 N -0.60 -13.43 3.65 -177.18 -0.65 -14.08 16 10 C 0.15 3.27 7.29 -8.65 -0.06 3.21 16 11 C -0.16 -2.62 8.01 -26.35 -0.21 -2.83 16 12 C 0.13 2.12 4.11 -72.40 -0.30 1.82 16 13 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 14 C 0.12 1.85 5.52 -4.05 -0.02 1.83 16 15 N -0.70 -9.84 5.29 -61.25 -0.32 -10.17 16 16 C 0.56 7.87 7.79 -12.33 -0.10 7.78 16 17 O -0.53 -8.82 16.45 5.32 0.09 -8.73 16 18 C -0.20 -2.40 5.91 -104.69 -0.62 -3.02 16 19 C 0.19 2.16 10.81 -16.78 -0.18 1.98 16 20 N -0.48 -6.03 10.19 -10.39 -0.11 -6.14 16 21 C 0.25 3.11 7.09 -157.06 -1.11 2.00 16 22 C 0.55 6.35 3.49 36.00 0.13 6.48 16 23 F -0.16 -1.82 17.30 2.25 0.04 -1.78 16 24 F -0.16 -1.87 17.19 2.25 0.04 -1.84 16 25 F -0.15 -1.75 16.86 2.25 0.04 -1.71 16 26 N -0.48 -5.86 9.81 -10.39 -0.10 -5.96 16 27 C 0.21 2.37 10.88 -16.78 -0.18 2.19 16 28 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.07 1.64 7.32 -51.92 -0.38 1.26 16 30 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.82 8.14 -51.92 -0.42 0.40 16 32 H 0.08 1.30 8.12 -51.93 -0.42 0.88 16 33 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.40 5.25 6.61 -40.82 -0.27 4.98 16 36 H 0.19 1.74 6.54 -52.49 -0.34 1.40 16 37 H 0.20 1.84 7.74 -52.49 -0.41 1.43 16 LS Contribution 339.15 15.07 5.11 5.11 Total: -1.00 -30.32 339.15 -6.63 -36.95 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -3.47 Total: 1.67 kcal Atomic # 6 Polarization: 18.52 SS G_CDS: -2.91 Total: 15.61 kcal Atomic # 7 Polarization: -60.77 SS G_CDS: -0.53 Total: -61.30 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: 0.09 Total: -8.73 kcal Atomic # 9 Polarization: -5.45 SS G_CDS: 0.12 Total: -5.33 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.32 -6.63 -36.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038382998.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.840 kcal (2) G-P(sol) polarization free energy of solvation -30.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds