Wall clock time and date at job start Tue Mar 31 2020 05:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00144 * 2 1 4 4 H 1.48506 * 109.47100 * 274.98266 * 3 2 1 5 5 H 1.48504 * 109.47328 * 34.98214 * 3 2 1 6 6 H 1.48506 * 109.47573 * 154.98330 * 3 2 1 7 7 C 1.38812 * 119.99955 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99965 * 185.01469 * 7 2 1 9 9 N 1.36934 * 120.00127 * 4.73743 * 7 2 1 10 10 C 1.47067 * 136.05759 * 353.46560 * 9 7 2 11 11 C 1.53230 * 88.08449 * 207.20299 * 10 9 7 12 12 C 1.47069 * 136.06002 * 173.82955 * 9 7 2 13 13 H 1.09001 * 113.46634 * 267.68739 * 12 9 7 14 14 C 1.52995 * 113.46478 * 38.06733 * 12 9 7 15 15 N 1.46498 * 109.47385 * 285.49525 * 14 12 9 16 16 C 1.34775 * 120.00150 * 180.02562 * 15 14 12 17 17 O 1.21554 * 120.00323 * 0.02562 * 16 15 14 18 18 C 1.47836 * 120.00093 * 179.97438 * 16 15 14 19 19 C 1.39947 * 120.93685 * 359.72983 * 18 16 15 20 20 N 1.32144 * 118.92364 * 179.71743 * 19 18 16 21 21 C 1.31877 * 120.96665 * 0.55870 * 20 19 18 22 22 C 1.50697 * 118.95020 * 179.72951 * 21 20 19 23 23 F 1.39900 * 109.47141 * 284.97242 * 22 21 20 24 24 F 1.39892 * 109.47604 * 44.98076 * 22 21 20 25 25 F 1.39907 * 109.46560 * 164.97991 * 22 21 20 26 26 N 1.31872 * 122.09222 * 359.71003 * 21 20 19 27 27 C 1.32139 * 120.96805 * 359.97438 * 26 21 20 28 28 H 0.96997 * 119.99594 * 0.02562 * 1 2 3 29 29 H 1.09009 * 113.46531 * 321.93389 * 10 9 7 30 30 H 1.09005 * 113.46959 * 92.37048 * 10 9 7 31 31 H 1.09008 * 114.32688 * 220.47259 * 11 10 9 32 32 H 1.08996 * 114.02185 * 87.71580 * 11 10 9 33 33 H 1.09007 * 109.47409 * 45.49625 * 14 12 9 34 34 H 1.09000 * 109.46920 * 165.49267 * 14 12 9 35 35 H 0.96997 * 119.99929 * 0.02562 * 15 14 12 36 36 H 1.08000 * 120.53896 * 359.96343 * 19 18 16 37 37 H 1.07998 * 120.53803 * 179.97438 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3924 2.1072 -1.3948 5 1 1.5043 2.6200 0.8027 6 1 3.5965 1.4121 0.5921 7 6 2.0103 -1.2021 0.0005 8 1 3.0871 -1.2039 0.0823 9 7 1.3291 -2.3861 -0.0969 10 6 -0.0825 -2.7986 -0.0986 11 6 0.3660 -4.1531 0.4600 12 6 1.6874 -3.8053 -0.2394 13 1 1.7322 -4.1397 -1.2759 14 6 2.9260 -4.2047 0.5650 15 7 4.1259 -3.6862 -0.0964 16 6 5.3422 -3.9173 0.4363 17 8 5.4436 -4.5565 1.4653 18 6 6.5531 -3.3945 -0.2314 19 6 6.4597 -2.6621 -1.4202 20 7 7.5674 -2.2087 -1.9802 21 6 8.7471 -2.4470 -1.4410 22 6 9.9813 -1.9135 -2.1214 23 9 10.2613 -2.6870 -3.2530 24 9 9.7651 -0.5859 -2.5058 25 9 11.0637 -1.9725 -1.2368 26 7 8.8809 -3.1371 -0.3252 27 6 7.8256 -3.6225 0.3047 28 1 -0.4849 0.8401 -0.0004 29 1 -0.7021 -2.2287 0.5941 30 1 -0.5150 -2.8623 -1.0971 31 1 -0.1543 -5.0099 0.0317 32 1 0.4308 -4.1851 1.5475 33 1 2.8564 -3.7884 1.5700 34 1 2.9852 -5.2914 0.6252 35 1 4.0451 -3.1764 -0.9177 36 1 5.4976 -2.4670 -1.8705 37 1 7.9433 -4.1870 1.2179 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038382998.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:29 Heat of formation + Delta-G solvation = -87.836922 kcal Electronic energy + Delta-G solvation = -27690.596750 eV Core-core repulsion = 23054.985906 eV Total energy + Delta-G solvation = -4635.610845 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.104 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -51.40924 -48.93023 -48.88810 -42.75404 -40.77845 -39.69398 -35.96306 -35.24893 -34.38552 -34.12105 -30.10137 -29.76288 -28.39645 -26.14493 -25.37171 -25.08719 -23.57964 -22.10230 -21.01293 -20.35238 -20.03535 -19.84049 -19.42541 -18.70907 -18.29713 -17.16617 -16.89447 -16.70249 -16.63388 -16.12057 -15.89172 -15.68935 -15.65465 -15.53647 -15.29563 -15.14058 -15.01948 -14.99833 -14.80457 -14.63887 -14.05728 -13.63607 -13.36323 -13.07976 -12.95174 -12.68392 -12.58125 -12.46891 -12.31031 -11.88107 -11.63913 -11.40884 -11.33068 -10.94401 -10.89630 -10.83746 -10.13113 -8.86201 -7.88342 -5.18347 -1.31068 -0.46379 0.86011 1.38230 1.44388 1.45728 1.52147 1.85915 2.08701 2.20095 2.22635 2.46507 2.94795 3.04629 3.15650 3.23368 3.30145 3.35644 3.43142 3.60013 3.97534 4.13917 4.34062 4.38924 4.64442 4.67192 4.73395 4.90288 5.10183 5.13064 5.21846 5.29566 5.37321 5.60908 5.77283 5.97702 6.18517 6.33258 6.92671 6.95248 7.65776 8.65953 9.30235 Molecular weight = 330.10amu Principal moments of inertia in cm(-1) A = 0.013303 B = 0.003384 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.273257 B = 8271.195426 C = 9714.881702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.066 4.066 3 Si 0.958 3.042 4 H -0.288 1.288 5 H -0.303 1.303 6 H -0.271 1.271 7 C -0.205 4.205 8 H 0.091 0.909 9 N -0.629 5.629 10 C 0.144 3.856 11 C -0.135 4.135 12 C 0.133 3.867 13 H 0.074 0.926 14 C 0.128 3.872 15 N -0.698 5.698 16 C 0.568 3.432 17 O -0.557 6.557 18 C -0.203 4.203 19 C 0.196 3.804 20 N -0.490 5.490 21 C 0.243 3.757 22 C 0.552 3.448 23 F -0.160 7.160 24 F -0.159 7.159 25 F -0.153 7.153 26 N -0.487 5.487 27 C 0.216 3.784 28 H 0.244 0.756 29 H 0.029 0.971 30 H 0.022 0.978 31 H 0.099 0.901 32 H 0.081 0.919 33 H 0.051 0.949 34 H 0.091 0.909 35 H 0.410 0.590 36 H 0.210 0.790 37 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.992 -10.019 -4.024 18.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.259 4.259 3 Si 0.788 3.212 4 H -0.215 1.215 5 H -0.231 1.231 6 H -0.195 1.195 7 C -0.333 4.333 8 H 0.109 0.891 9 N -0.356 5.356 10 C 0.018 3.982 11 C -0.174 4.174 12 C 0.027 3.973 13 H 0.091 0.909 14 C 0.004 3.996 15 N -0.348 5.348 16 C 0.353 3.647 17 O -0.437 6.437 18 C -0.211 4.211 19 C 0.030 3.970 20 N -0.204 5.204 21 C -0.028 4.028 22 C 0.495 3.505 23 F -0.141 7.141 24 F -0.140 7.140 25 F -0.134 7.134 26 N -0.201 5.201 27 C 0.050 3.950 28 H 0.054 0.946 29 H 0.047 0.953 30 H 0.040 0.960 31 H 0.118 0.882 32 H 0.099 0.901 33 H 0.069 0.931 34 H 0.109 0.891 35 H 0.247 0.753 36 H 0.226 0.774 37 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 15.937 -9.749 -3.744 19.054 hybrid contribution -0.634 1.471 -0.123 1.606 sum 15.304 -8.278 -3.867 17.824 Atomic orbital electron populations 1.70007 1.06332 1.25147 1.58529 1.25470 0.96236 1.00285 1.03904 0.85354 0.77917 0.80699 0.77180 1.21517 1.23054 1.19535 1.19176 0.91036 0.82340 1.40759 0.89116 1.45962 1.03572 1.01236 1.84783 1.21942 0.87839 0.91666 0.96753 1.23454 0.95932 0.97457 1.00508 1.22595 0.92820 0.84298 0.97616 0.90884 1.21769 0.82595 0.99042 0.96167 1.45862 1.05467 1.54862 1.28598 1.17700 0.82961 0.79979 0.84047 1.90796 1.86812 1.41708 1.24404 1.22002 0.97027 1.03053 0.99003 1.24011 0.97803 0.86049 0.89148 1.68078 0.98302 1.20307 1.33671 1.23009 0.92969 0.95298 0.91541 1.16984 0.81065 0.75887 0.76524 1.93270 1.93956 1.74942 1.51925 1.93275 1.94690 1.34822 1.91254 1.93277 1.55895 1.96013 1.68203 1.68203 1.35017 1.09525 1.07309 1.23907 0.84790 0.89090 0.97208 0.94642 0.95253 0.96011 0.88244 0.90072 0.93054 0.89103 0.75339 0.77388 0.76910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.89 11.63 21.65 0.25 -54.64 16 2 C -0.07 -3.50 5.50 84.86 0.47 -3.03 16 3 Si 0.96 43.65 29.56 68.60 2.03 45.68 16 4 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 5 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 6 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.20 -10.02 10.54 84.03 0.89 -9.13 16 8 H 0.09 4.10 7.61 -2.91 -0.02 4.08 16 9 N -0.63 -27.41 3.65 -714.47 -2.61 -30.01 16 10 C 0.14 6.05 7.29 83.08 0.61 6.66 16 11 C -0.13 -4.04 8.01 30.84 0.25 -3.79 16 12 C 0.13 4.12 4.11 41.79 0.17 4.29 16 13 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 14 C 0.13 3.59 5.52 86.38 0.48 4.07 16 15 N -0.70 -17.74 5.29 -465.99 -2.46 -20.20 16 16 C 0.57 14.58 7.79 86.78 0.68 15.26 16 17 O -0.56 -17.34 16.45 -3.89 -0.06 -17.41 16 18 C -0.20 -4.38 5.91 -19.91 -0.12 -4.50 16 19 C 0.20 3.99 10.81 85.06 0.92 4.91 16 20 N -0.49 -11.45 10.19 -186.80 -1.90 -13.36 16 21 C 0.24 5.68 7.09 138.70 0.98 6.66 16 22 C 0.55 12.02 3.49 71.24 0.25 12.27 16 23 F -0.16 -3.37 17.30 44.97 0.78 -2.59 16 24 F -0.16 -3.61 17.19 44.97 0.77 -2.84 16 25 F -0.15 -3.27 16.86 44.97 0.76 -2.51 16 26 N -0.49 -11.00 9.81 -186.80 -1.83 -12.84 16 27 C 0.22 4.42 10.88 85.06 0.93 5.34 16 28 H 0.24 13.98 8.31 -92.71 -0.77 13.21 16 29 H 0.03 1.44 7.32 -2.38 -0.02 1.43 16 30 H 0.02 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.10 2.26 8.14 -2.38 -0.02 2.25 16 32 H 0.08 2.45 8.12 -2.39 -0.02 2.43 16 33 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 34 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.41 9.43 6.61 -92.71 -0.61 8.81 16 36 H 0.21 3.26 6.54 -2.91 -0.02 3.24 16 37 H 0.21 3.52 7.74 -2.91 -0.02 3.50 16 Total: -1.00 -65.59 339.15 2.75 -62.85 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: 0.54 Total: 8.86 kcal Atomic # 6 Polarization: 32.52 SS G_CDS: 6.49 Total: 39.01 kcal Atomic # 7 Polarization: -122.49 SS G_CDS: -8.56 Total: -131.05 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -0.06 Total: -17.41 kcal Atomic # 9 Polarization: -10.25 SS G_CDS: 2.31 Total: -7.94 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -65.59 2.75 -62.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038382998.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.988 kcal (2) G-P(sol) polarization free energy of solvation -65.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds