Wall clock time and date at job start Tue Mar 31 2020 05:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00340 * 2 1 4 4 H 1.48502 * 109.46624 * 274.98803 * 3 2 1 5 5 H 1.48500 * 109.47043 * 34.98487 * 3 2 1 6 6 H 1.48490 * 109.47458 * 154.98798 * 3 2 1 7 7 C 1.38817 * 120.00208 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00284 * 185.07632 * 7 2 1 9 9 N 1.36944 * 119.99623 * 5.07302 * 7 2 1 10 10 C 1.47666 * 134.45330 * 173.49587 * 9 7 2 11 11 C 1.53461 * 85.96993 * 155.71275 * 10 9 7 12 12 C 1.47671 * 134.45652 * 353.50174 * 9 7 2 13 13 C 1.52901 * 113.50333 * 137.68289 * 11 10 9 14 14 N 1.47344 * 108.08787 * 82.96306 * 13 11 10 15 15 C 1.34775 * 121.05128 * 228.39493 * 14 13 11 16 16 O 1.21281 * 120.00064 * 359.97438 * 15 14 13 17 17 C 1.50697 * 119.99766 * 179.97438 * 15 14 13 18 18 C 1.53041 * 113.15507 * 280.54618 * 17 15 14 19 19 S 1.81500 * 89.86581 * 211.86790 * 18 17 15 20 20 O 1.42100 * 112.71586 * 280.42960 * 19 18 17 21 21 O 1.42102 * 112.85776 * 136.68079 * 19 18 17 22 22 C 1.53045 * 113.15101 * 180.11469 * 17 15 14 23 23 C 1.47221 * 117.82839 * 48.37389 * 14 13 11 24 24 C 1.53229 * 108.75575 * 307.80898 * 23 14 13 25 25 O 1.42487 * 113.76656 * 268.70606 * 11 10 9 26 26 H 0.96996 * 120.00018 * 359.97438 * 1 2 3 27 27 H 1.08996 * 113.79535 * 41.44914 * 10 9 7 28 28 H 1.09011 * 113.90002 * 269.98688 * 10 9 7 29 29 H 1.08995 * 113.79507 * 90.02717 * 12 9 7 30 30 H 1.09006 * 113.79131 * 318.54959 * 12 9 7 31 31 H 1.08995 * 109.74749 * 202.63088 * 13 11 10 32 32 H 1.09004 * 109.74226 * 323.30356 * 13 11 10 33 33 H 1.09001 * 112.49402 * 50.33447 * 17 15 14 34 34 H 1.09004 * 113.14668 * 327.11522 * 18 17 15 35 35 H 1.09002 * 113.14774 * 96.59333 * 18 17 15 36 36 H 1.08993 * 113.15345 * 263.40633 * 22 17 15 37 37 H 1.09001 * 113.14873 * 32.89394 * 22 17 15 38 38 H 1.08998 * 109.57572 * 188.03362 * 23 14 13 39 39 H 1.09002 * 109.58791 * 67.59251 * 23 14 13 40 40 H 1.08999 * 109.49579 * 294.17057 * 24 23 14 41 41 H 1.08999 * 109.51472 * 174.10630 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3923 2.1071 -1.3948 5 1 1.5044 2.6199 0.8027 6 1 3.5965 1.4120 0.5919 7 6 2.0103 -1.2022 0.0005 8 1 3.0871 -1.2040 0.0833 9 7 1.3296 -2.3858 -0.1038 10 6 1.7298 -3.7992 -0.2550 11 6 0.3716 -4.1384 0.3736 12 6 -0.0988 -2.7603 -0.1103 13 6 -0.3434 -5.3034 -0.3115 14 7 0.1966 -6.5589 0.2390 15 6 0.5877 -7.5620 -0.5717 16 8 0.4975 -7.4395 -1.7749 17 6 1.1372 -8.8358 0.0169 18 6 2.6011 -8.7174 0.4473 19 16 2.8570 -10.4683 0.0435 20 8 2.3798 -11.3410 1.0584 21 8 4.0746 -10.7025 -0.6506 22 6 1.5346 -9.8660 -1.0429 23 6 0.2951 -6.6813 1.7028 24 6 1.0489 -5.4643 2.2493 25 8 0.4115 -4.2674 1.7920 26 1 -0.4850 0.8400 0.0004 27 1 2.5828 -4.0830 0.3614 28 1 1.8276 -4.1220 -1.2916 29 1 -0.5458 -2.7724 -1.1044 30 1 -0.6988 -2.2187 0.6211 31 1 -1.4139 -5.2454 -0.1148 32 1 -0.1638 -5.2651 -1.3859 33 1 0.4938 -9.2474 0.7946 34 1 3.1800 -8.0431 -0.1837 35 1 2.7194 -8.5003 1.5090 36 1 0.7603 -10.6103 -1.2286 37 1 1.9077 -9.4135 -1.9616 38 1 0.8375 -7.5918 1.9575 39 1 -0.7050 -6.7160 2.1348 40 1 2.0795 -5.4855 1.8951 41 1 1.0383 -5.4885 3.3390 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053270421.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:44 Heat of formation + Delta-G solvation = -42.931743 kcal Electronic energy + Delta-G solvation = -27233.094403 eV Core-core repulsion = 23244.438734 eV Total energy + Delta-G solvation = -3988.655669 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.113 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -40.77454 -39.19658 -37.77098 -36.58933 -36.35540 -36.09372 -34.61355 -32.28455 -30.18271 -28.21485 -27.16302 -26.54239 -25.17219 -24.03044 -23.42923 -21.68869 -19.44872 -19.28347 -18.86239 -17.98090 -17.08179 -16.80205 -16.76170 -16.31709 -16.11395 -15.60143 -15.37269 -15.18007 -14.60546 -14.53645 -14.20072 -13.86047 -13.66191 -13.46338 -13.39987 -12.71787 -12.68484 -12.66562 -12.49285 -12.27304 -12.06049 -11.97079 -11.47765 -11.39504 -11.22723 -10.92415 -10.86522 -10.82386 -10.80365 -10.26936 -10.11075 -9.75539 -9.70498 -9.35034 -8.84489 -8.43514 -6.90867 -5.80202 -3.11396 -0.33553 1.47963 2.35364 2.69616 3.20615 3.38776 3.43668 3.45849 3.57827 3.66770 3.95237 4.04554 4.36483 4.39584 4.43143 4.67718 4.73839 4.84192 4.90289 4.99625 5.08644 5.13989 5.25895 5.31336 5.44186 5.51606 5.62047 5.67152 5.75008 5.95209 6.20573 6.26128 6.43204 6.50193 6.89715 7.12825 7.20980 7.46812 7.73745 7.94063 7.95908 9.01243 9.67793 10.54187 11.37815 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.024313 B = 0.002914 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.390760 B = 9606.920334 C = 9853.422339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.005 4.005 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.223 4.223 8 H 0.080 0.920 9 N -0.601 5.601 10 C 0.101 3.899 11 C 0.051 3.949 12 C 0.185 3.815 13 C 0.097 3.903 14 N -0.605 5.605 15 C 0.540 3.460 16 O -0.529 6.529 17 C -0.096 4.096 18 C -0.595 4.595 19 S 2.416 3.584 20 O -0.912 6.912 21 O -0.919 6.919 22 C -0.578 4.578 23 C 0.069 3.931 24 C 0.044 3.956 25 O -0.334 6.334 26 H 0.255 0.745 27 H 0.043 0.957 28 H 0.041 0.959 29 H 0.046 0.954 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.103 0.897 33 H 0.135 0.865 34 H 0.152 0.848 35 H 0.134 0.866 36 H 0.130 0.870 37 H 0.156 0.844 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.055 0.945 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.808 -21.895 3.613 22.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.202 4.202 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.350 4.350 8 H 0.098 0.902 9 N -0.327 5.327 10 C -0.025 4.025 11 C 0.009 3.991 12 C 0.059 3.941 13 C -0.025 4.025 14 N -0.339 5.339 15 C 0.325 3.675 16 O -0.406 6.406 17 C -0.119 4.119 18 C -0.723 4.723 19 S 2.597 3.403 20 O -0.909 6.909 21 O -0.916 6.916 22 C -0.707 4.707 23 C -0.054 4.054 24 C -0.034 4.034 25 O -0.252 6.252 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.121 0.879 33 H 0.153 0.847 34 H 0.170 0.830 35 H 0.152 0.848 36 H 0.148 0.852 37 H 0.174 0.826 38 H 0.108 0.892 39 H 0.099 0.901 40 H 0.073 0.927 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.389 -22.297 3.404 22.598 hybrid contribution -0.161 1.719 -0.366 1.765 sum 1.227 -20.578 3.037 20.837 Atomic orbital electron populations 1.69808 1.05047 1.25490 1.56187 1.24802 0.95690 0.97516 1.02169 0.86108 0.78725 0.83494 0.77501 1.21601 1.21649 1.20579 1.18974 0.90685 0.81802 1.43551 0.90224 1.45734 1.01829 1.00496 1.84674 1.23042 0.94967 0.87299 0.97186 1.23830 0.97978 0.95897 0.81357 1.22152 0.88883 0.85060 0.97962 1.22373 0.98189 0.81462 1.00504 1.48190 1.62912 1.16120 1.06656 1.19627 0.77634 0.83679 0.86563 1.90720 1.54837 1.80762 1.14253 1.21580 0.95923 0.95965 0.98476 1.31051 1.01737 1.27635 1.11870 1.08286 0.76579 0.77495 0.77956 1.93728 1.81657 1.60887 1.54615 1.93667 1.41468 1.84684 1.71801 1.30868 1.19194 1.07678 1.12918 1.22554 1.02438 1.00254 0.80150 1.22886 0.96079 0.84674 0.99776 1.88064 1.78331 1.38870 1.19926 0.93536 0.93872 0.94145 0.93602 0.90009 0.90586 0.87868 0.84720 0.83032 0.84780 0.85176 0.82603 0.89210 0.90083 0.92710 0.87918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.11 11.51 55.49 0.64 -26.47 16 2 C 0.00 -0.14 5.50 -17.43 -0.10 -0.24 16 3 Si 0.91 22.16 29.56 -169.99 -5.02 17.14 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.22 -6.29 10.70 -15.05 -0.16 -6.46 16 8 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 9 N -0.60 -15.49 3.70 -180.33 -0.67 -16.16 16 10 C 0.10 2.10 8.08 -3.17 -0.03 2.07 16 11 C 0.05 0.95 1.21 -90.30 -0.11 0.84 16 12 C 0.19 4.30 6.81 -3.18 -0.02 4.28 16 13 C 0.10 1.48 5.78 -3.63 -0.02 1.46 16 14 N -0.61 -7.49 3.03 -172.35 -0.52 -8.01 16 15 C 0.54 6.53 7.22 -10.99 -0.08 6.45 16 16 O -0.53 -8.36 15.44 5.56 0.09 -8.27 16 17 C -0.10 -0.71 2.47 -91.73 -0.23 -0.93 16 18 C -0.60 -3.31 7.05 37.18 0.26 -3.04 16 19 S 2.42 13.86 7.55 -107.50 -0.81 13.05 16 20 O -0.91 -7.51 18.18 -57.31 -1.04 -8.55 16 21 O -0.92 -8.79 18.18 -57.31 -1.04 -9.83 16 22 C -0.58 -3.59 7.18 37.18 0.27 -3.32 16 23 C 0.07 0.66 6.45 -3.53 -0.02 0.63 16 24 C 0.04 0.53 6.88 37.28 0.26 0.79 16 25 O -0.33 -6.03 10.52 -35.23 -0.37 -6.40 16 26 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 27 H 0.04 0.86 7.27 -51.93 -0.38 0.49 16 28 H 0.04 0.83 7.94 -51.92 -0.41 0.42 16 29 H 0.05 1.06 8.09 -51.93 -0.42 0.64 16 30 H 0.08 2.12 7.37 -51.93 -0.38 1.74 16 31 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.10 1.69 6.91 -51.93 -0.36 1.34 16 33 H 0.14 0.62 7.60 -51.93 -0.39 0.23 16 34 H 0.15 0.93 8.11 -51.93 -0.42 0.51 16 35 H 0.13 0.43 7.53 -51.93 -0.39 0.04 16 36 H 0.13 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.16 1.14 7.58 -51.93 -0.39 0.75 16 38 H 0.09 0.53 5.16 -51.93 -0.27 0.26 16 39 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.05 0.68 7.19 -51.93 -0.37 0.30 16 41 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 343.77 15.07 5.18 5.18 Total: -1.00 -39.25 343.77 -8.98 -48.23 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: -5.43 Total: -2.45 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: 0.02 Total: 2.54 kcal Atomic # 7 Polarization: -50.09 SS G_CDS: -0.55 Total: -50.64 kcal Atomic # 8 Polarization: -30.69 SS G_CDS: -2.37 Total: -33.06 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Atomic # 16 Polarization: 13.86 SS G_CDS: -0.81 Total: 13.05 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -39.25 -8.98 -48.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053270421.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.299 kcal (2) G-P(sol) polarization free energy of solvation -39.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds