Wall clock time and date at job start Tue Mar 31 2020 05:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00340 * 2 1 4 4 H 1.48502 * 109.46624 * 274.98803 * 3 2 1 5 5 H 1.48500 * 109.47043 * 34.98487 * 3 2 1 6 6 H 1.48490 * 109.47458 * 154.98798 * 3 2 1 7 7 C 1.38817 * 120.00208 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00284 * 185.07632 * 7 2 1 9 9 N 1.36944 * 119.99623 * 5.07302 * 7 2 1 10 10 C 1.47666 * 134.45330 * 173.49587 * 9 7 2 11 11 C 1.53461 * 85.96993 * 155.71275 * 10 9 7 12 12 C 1.47671 * 134.45652 * 353.50174 * 9 7 2 13 13 C 1.52901 * 113.50333 * 137.68289 * 11 10 9 14 14 N 1.47344 * 108.08787 * 82.96306 * 13 11 10 15 15 C 1.34775 * 121.05128 * 228.39493 * 14 13 11 16 16 O 1.21281 * 120.00064 * 359.97438 * 15 14 13 17 17 C 1.50697 * 119.99766 * 179.97438 * 15 14 13 18 18 C 1.53041 * 113.15507 * 280.54618 * 17 15 14 19 19 S 1.81500 * 89.86581 * 211.86790 * 18 17 15 20 20 O 1.42100 * 112.71586 * 280.42960 * 19 18 17 21 21 O 1.42102 * 112.85776 * 136.68079 * 19 18 17 22 22 C 1.53045 * 113.15101 * 180.11469 * 17 15 14 23 23 C 1.47221 * 117.82839 * 48.37389 * 14 13 11 24 24 C 1.53229 * 108.75575 * 307.80898 * 23 14 13 25 25 O 1.42487 * 113.76656 * 268.70606 * 11 10 9 26 26 H 0.96996 * 120.00018 * 359.97438 * 1 2 3 27 27 H 1.08996 * 113.79535 * 41.44914 * 10 9 7 28 28 H 1.09011 * 113.90002 * 269.98688 * 10 9 7 29 29 H 1.08995 * 113.79507 * 90.02717 * 12 9 7 30 30 H 1.09006 * 113.79131 * 318.54959 * 12 9 7 31 31 H 1.08995 * 109.74749 * 202.63088 * 13 11 10 32 32 H 1.09004 * 109.74226 * 323.30356 * 13 11 10 33 33 H 1.09001 * 112.49402 * 50.33447 * 17 15 14 34 34 H 1.09004 * 113.14668 * 327.11522 * 18 17 15 35 35 H 1.09002 * 113.14774 * 96.59333 * 18 17 15 36 36 H 1.08993 * 113.15345 * 263.40633 * 22 17 15 37 37 H 1.09001 * 113.14873 * 32.89394 * 22 17 15 38 38 H 1.08998 * 109.57572 * 188.03362 * 23 14 13 39 39 H 1.09002 * 109.58791 * 67.59251 * 23 14 13 40 40 H 1.08999 * 109.49579 * 294.17057 * 24 23 14 41 41 H 1.08999 * 109.51472 * 174.10630 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3923 2.1071 -1.3948 5 1 1.5044 2.6199 0.8027 6 1 3.5965 1.4120 0.5919 7 6 2.0103 -1.2022 0.0005 8 1 3.0871 -1.2040 0.0833 9 7 1.3296 -2.3858 -0.1038 10 6 1.7298 -3.7992 -0.2550 11 6 0.3716 -4.1384 0.3736 12 6 -0.0988 -2.7603 -0.1103 13 6 -0.3434 -5.3034 -0.3115 14 7 0.1966 -6.5589 0.2390 15 6 0.5877 -7.5620 -0.5717 16 8 0.4975 -7.4395 -1.7749 17 6 1.1372 -8.8358 0.0169 18 6 2.6011 -8.7174 0.4473 19 16 2.8570 -10.4683 0.0435 20 8 2.3798 -11.3410 1.0584 21 8 4.0746 -10.7025 -0.6506 22 6 1.5346 -9.8660 -1.0429 23 6 0.2951 -6.6813 1.7028 24 6 1.0489 -5.4643 2.2493 25 8 0.4115 -4.2674 1.7920 26 1 -0.4850 0.8400 0.0004 27 1 2.5828 -4.0830 0.3614 28 1 1.8276 -4.1220 -1.2916 29 1 -0.5458 -2.7724 -1.1044 30 1 -0.6988 -2.2187 0.6211 31 1 -1.4139 -5.2454 -0.1148 32 1 -0.1638 -5.2651 -1.3859 33 1 0.4938 -9.2474 0.7946 34 1 3.1800 -8.0431 -0.1837 35 1 2.7194 -8.5003 1.5090 36 1 0.7603 -10.6103 -1.2286 37 1 1.9077 -9.4135 -1.9616 38 1 0.8375 -7.5918 1.9575 39 1 -0.7050 -6.7160 2.1348 40 1 2.0795 -5.4855 1.8951 41 1 1.0383 -5.4885 3.3390 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053270421.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:42 Heat of formation + Delta-G solvation = -75.596784 kcal Electronic energy + Delta-G solvation = -27234.510866 eV Core-core repulsion = 23244.438734 eV Total energy + Delta-G solvation = -3990.072132 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.113 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -41.87153 -40.43630 -38.37991 -37.79414 -37.20062 -36.75399 -35.77487 -34.27591 -31.55851 -29.47159 -28.23026 -27.54576 -26.90711 -25.07712 -24.57029 -23.20879 -20.66738 -19.98366 -19.74069 -18.83233 -18.78606 -17.78620 -17.35115 -17.31599 -17.06519 -16.90489 -16.43294 -16.25643 -16.01219 -15.78163 -15.35787 -15.01794 -14.83788 -14.79764 -14.18672 -14.12768 -13.89944 -13.37198 -13.31296 -13.28743 -13.06415 -12.98618 -12.82788 -12.75843 -12.55480 -12.46573 -12.11763 -11.98289 -11.92596 -11.74891 -11.48140 -11.31660 -10.98233 -10.81773 -10.76780 -9.57768 -8.95530 -7.94632 -5.27627 -0.83629 1.00052 1.43810 1.46095 1.49990 1.54971 1.78001 2.44215 2.68701 2.73887 3.04022 3.12908 3.20970 3.31480 3.40649 3.53024 3.73324 3.83675 3.94267 4.06265 4.13548 4.28374 4.31474 4.41259 4.51563 4.54092 4.65965 4.69175 4.72475 4.85178 4.87962 4.97646 4.98521 5.15525 5.16652 5.28207 5.45128 5.87325 6.29231 6.39157 6.87247 7.02987 7.55758 8.49573 9.23013 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.024313 B = 0.002914 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.390760 B = 9606.920334 C = 9853.422339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.063 4.063 3 Si 0.980 3.020 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.267 1.267 7 C -0.239 4.239 8 H 0.081 0.919 9 N -0.632 5.632 10 C 0.104 3.896 11 C 0.085 3.915 12 C 0.178 3.822 13 C 0.107 3.893 14 N -0.607 5.607 15 C 0.536 3.464 16 O -0.574 6.574 17 C -0.099 4.099 18 C -0.591 4.591 19 S 2.463 3.537 20 O -0.929 6.929 21 O -0.958 6.958 22 C -0.582 4.582 23 C 0.070 3.930 24 C 0.032 3.968 25 O -0.367 6.367 26 H 0.250 0.750 27 H 0.052 0.948 28 H 0.042 0.958 29 H 0.039 0.961 30 H 0.046 0.954 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.174 0.826 34 H 0.146 0.854 35 H 0.167 0.833 36 H 0.149 0.851 37 H 0.142 0.858 38 H 0.136 0.864 39 H 0.097 0.903 40 H 0.054 0.946 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.468 -24.025 5.290 24.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.256 4.256 3 Si 0.807 3.193 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.192 1.192 7 C -0.367 4.367 8 H 0.099 0.901 9 N -0.359 5.359 10 C -0.022 4.022 11 C 0.043 3.957 12 C 0.052 3.948 13 C -0.017 4.017 14 N -0.340 5.340 15 C 0.323 3.677 16 O -0.453 6.453 17 C -0.122 4.122 18 C -0.719 4.719 19 S 2.645 3.355 20 O -0.926 6.926 21 O -0.956 6.956 22 C -0.711 4.711 23 C -0.052 4.052 24 C -0.044 4.044 25 O -0.285 6.285 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.191 0.809 34 H 0.164 0.836 35 H 0.185 0.815 36 H 0.167 0.833 37 H 0.160 0.840 38 H 0.154 0.846 39 H 0.115 0.885 40 H 0.072 0.928 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.076 -24.492 5.105 25.104 hybrid contribution -0.360 2.340 -0.858 2.518 sum 1.716 -22.152 4.247 22.621 Atomic orbital electron populations 1.69998 1.06463 1.25830 1.57519 1.25658 0.96609 1.00866 1.02501 0.85048 0.77882 0.79021 0.77301 1.21416 1.21834 1.19178 1.19359 0.91139 0.83296 1.42906 0.90083 1.46102 1.03157 1.01665 1.84928 1.23144 0.96756 0.84699 0.97564 1.23120 0.95717 0.94531 0.82294 1.22047 0.87622 0.88176 0.96953 1.21972 0.98432 0.82071 0.99230 1.48262 1.62658 1.14935 1.08128 1.20419 0.76546 0.84684 0.86026 1.90708 1.56441 1.81750 1.16398 1.21812 0.97186 0.93522 0.99650 1.31046 1.00185 1.26691 1.14018 1.06891 0.75023 0.76909 0.76657 1.93700 1.81752 1.62003 1.55188 1.93616 1.43620 1.85500 1.72818 1.30907 1.19943 1.07779 1.12422 1.22801 1.03751 1.00714 0.77890 1.23311 0.95942 0.83568 1.01592 1.88002 1.79208 1.42393 1.18906 0.94060 0.92980 0.93993 0.94379 0.93542 0.89520 0.89475 0.80898 0.83568 0.81457 0.83300 0.83981 0.84606 0.88522 0.92815 0.84948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 51. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.05 11.51 21.65 0.25 -57.80 16 2 C -0.06 -3.65 5.50 84.86 0.47 -3.18 16 3 Si 0.98 46.34 29.56 68.60 2.03 48.37 16 4 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 5 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 6 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 7 C -0.24 -13.80 10.70 84.03 0.90 -12.90 16 8 H 0.08 4.50 7.83 -2.91 -0.02 4.47 16 9 N -0.63 -33.48 3.70 -729.34 -2.70 -36.18 16 10 C 0.10 4.32 8.08 86.31 0.70 5.02 16 11 C 0.09 3.17 1.21 -10.49 -0.01 3.16 16 12 C 0.18 8.64 6.81 86.30 0.59 9.23 16 13 C 0.11 3.20 5.78 86.19 0.50 3.70 16 14 N -0.61 -13.44 3.03 -817.58 -2.48 -15.92 16 15 C 0.54 11.68 7.22 87.66 0.63 12.31 16 16 O -0.57 -17.71 15.44 -3.03 -0.05 -17.76 16 17 C -0.10 -1.07 2.47 -11.51 -0.03 -1.09 16 18 C -0.59 -4.27 7.05 72.00 0.51 -3.77 16 19 S 2.46 21.56 7.55 -56.49 -0.43 21.14 16 20 O -0.93 -12.17 18.18 -127.87 -2.32 -14.50 16 21 O -0.96 -16.94 18.18 -127.87 -2.32 -19.27 16 22 C -0.58 -5.76 7.18 72.00 0.52 -5.24 16 23 C 0.07 1.02 6.45 86.32 0.56 1.57 16 24 C 0.03 0.68 6.88 72.06 0.50 1.18 16 25 O -0.37 -12.86 10.52 -148.98 -1.57 -14.43 16 26 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 27 H 0.05 2.05 7.27 -2.39 -0.02 2.03 16 28 H 0.04 1.75 7.94 -2.38 -0.02 1.73 16 29 H 0.04 1.87 8.09 -2.39 -0.02 1.85 16 30 H 0.05 2.55 7.37 -2.38 -0.02 2.53 16 31 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 32 H 0.09 2.91 6.91 -2.38 -0.02 2.89 16 33 H 0.17 0.57 7.60 -2.39 -0.02 0.55 16 34 H 0.15 1.39 8.11 -2.39 -0.02 1.37 16 35 H 0.17 0.10 7.53 -2.39 -0.02 0.08 16 36 H 0.15 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.14 1.93 7.58 -2.39 -0.02 1.91 16 38 H 0.14 0.73 5.16 -2.39 -0.01 0.72 16 39 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.05 1.15 7.19 -2.39 -0.02 1.13 16 41 H 0.13 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -88.90 343.77 -2.71 -91.62 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: 1.06 Total: 4.75 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: 5.82 Total: 9.97 kcal Atomic # 7 Polarization: -104.97 SS G_CDS: -4.93 Total: -109.90 kcal Atomic # 8 Polarization: -59.69 SS G_CDS: -6.26 Total: -65.95 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Atomic # 16 Polarization: 21.56 SS G_CDS: -0.43 Total: 21.14 kcal Total: -88.90 -2.71 -91.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053270421.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.022 kcal (2) G-P(sol) polarization free energy of solvation -88.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds