Wall clock time and date at job start Tue Mar 31 2020 05:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 119.99875 * 2 1 4 4 H 1.48499 * 109.46952 * 269.99460 * 3 2 1 5 5 H 1.48491 * 109.46919 * 30.00109 * 3 2 1 6 6 H 1.48506 * 109.46733 * 149.99700 * 3 2 1 7 7 C 1.38813 * 120.00066 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00178 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99940 * 0.02562 * 7 2 1 10 10 C 1.47018 * 125.64978 * 0.02562 * 9 7 2 11 11 C 1.54322 * 107.27336 * 178.90891 * 10 9 7 12 12 H 1.09002 * 110.71963 * 96.17078 * 11 10 9 13 13 O 1.42901 * 110.71944 * 219.26540 * 11 10 9 14 14 C 1.55157 * 102.94206 * 337.80559 * 11 10 9 15 15 H 1.08997 * 111.00429 * 277.43204 * 14 11 10 16 16 N 1.46502 * 111.00273 * 153.57243 * 14 11 10 17 17 C 1.34778 * 119.99724 * 155.00020 * 16 14 11 18 18 O 1.21589 * 119.99967 * 0.02562 * 17 16 14 19 19 C 1.47568 * 119.99899 * 180.02562 * 17 16 14 20 20 C 1.39754 * 120.13191 * 0.02562 * 19 17 16 21 21 C 1.37922 * 119.87728 * 180.02562 * 20 19 17 22 22 F 1.35096 * 119.92836 * 179.97438 * 21 20 19 23 23 C 1.38945 * 120.14303 * 359.97438 * 21 20 19 24 24 F 1.35104 * 119.86581 * 180.02562 * 23 21 20 25 25 C 1.38450 * 120.26982 * 0.02562 * 23 21 20 26 26 C 1.38207 * 120.12040 * 359.72146 * 25 23 21 27 27 F 1.35099 * 120.07759 * 180.29437 * 26 25 23 28 28 C 1.47426 * 125.64917 * 179.97438 * 9 7 2 29 29 H 0.96994 * 120.00360 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.88222 * 59.49315 * 10 9 7 31 31 H 1.09005 * 110.01447 * 298.39894 * 10 9 7 32 32 H 0.96689 * 114.00373 * 296.15847 * 13 11 10 33 33 H 0.96998 * 120.00124 * 335.00763 * 16 14 11 34 34 H 1.07998 * 120.06050 * 359.97438 * 20 19 17 35 35 H 1.08004 * 119.93726 * 180.02562 * 25 23 21 36 36 H 1.08998 * 110.36876 * 323.00467 * 28 9 7 37 37 H 1.09003 * 110.36123 * 85.32149 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1375 -2.5328 -0.0005 11 6 -0.4484 -4.0441 -0.0282 12 1 -0.6324 -4.4185 0.9789 13 8 -1.5648 -4.3152 -0.8780 14 6 0.8523 -4.6559 -0.6122 15 1 0.8581 -4.5956 -1.7005 16 7 1.0292 -6.0394 -0.1640 17 6 1.7599 -6.8986 -0.9019 18 8 2.2727 -6.5252 -1.9392 19 6 1.9377 -8.2923 -0.4507 20 6 1.3491 -8.7244 0.7409 21 6 1.5190 -10.0281 1.1578 22 9 0.9510 -10.4468 2.3098 23 6 2.2733 -10.9117 0.3956 24 9 2.4357 -12.1876 0.8091 25 6 2.8591 -10.4900 -0.7858 26 6 2.6916 -9.1875 -1.2167 27 9 3.2586 -8.7786 -2.3727 28 6 1.9334 -3.7312 0.0005 29 1 -0.4850 0.8400 -0.0004 30 1 -0.5569 -2.0519 -0.8842 31 1 -0.5574 -2.0844 0.8999 32 1 -2.3941 -3.9203 -0.5760 33 1 0.6204 -6.3371 0.6637 34 1 0.7629 -8.0386 1.3345 35 1 3.4439 -11.1815 -1.3743 36 1 2.8333 -3.7403 -0.6143 37 1 2.1657 -4.0423 1.0191 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077594017.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:08 Heat of formation + Delta-G solvation = -151.755540 kcal Electronic energy + Delta-G solvation = -27773.898558 eV Core-core repulsion = 23103.223243 eV Total energy + Delta-G solvation = -4670.675315 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.098 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -50.04249 -49.30033 -49.09813 -40.31525 -38.70487 -37.71258 -35.14482 -34.30898 -32.25568 -31.36762 -30.60047 -28.43489 -27.13970 -25.00798 -24.33911 -23.45573 -21.24443 -20.62660 -20.32654 -18.98579 -18.44521 -18.15809 -17.21056 -17.00481 -16.96407 -16.69786 -15.97549 -15.89107 -15.62543 -15.49644 -15.05423 -14.99437 -14.78572 -14.66170 -14.27093 -14.11103 -13.68047 -13.21561 -12.81144 -12.73103 -12.59970 -12.29580 -12.16962 -12.10446 -11.59758 -11.31413 -10.94315 -10.84617 -10.23791 -10.09213 -9.99342 -9.88993 -9.82164 -9.42353 -9.19210 -8.96655 -8.68701 -6.96946 -5.80738 -3.15540 -0.12632 0.23715 2.18716 2.88121 3.03109 3.15161 3.37241 3.40637 3.42439 3.43823 3.78217 3.79506 4.11211 4.38413 4.46274 4.54514 4.86057 4.94746 5.01810 5.10737 5.24424 5.34636 5.38201 5.50886 5.58034 5.73198 5.97450 6.02015 6.02949 6.35422 6.52856 6.75136 7.25884 7.39443 7.44215 7.68690 8.04875 8.08769 8.14155 9.10432 9.70429 10.32614 11.31073 Molecular weight = 330.10amu Principal moments of inertia in cm(-1) A = 0.021253 B = 0.002706 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.131152 B =10345.096951 C =10740.356086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.007 4.007 3 Si 0.916 3.084 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.230 4.230 8 H 0.081 0.919 9 N -0.599 5.599 10 C 0.153 3.847 11 C 0.068 3.932 12 H 0.058 0.942 13 O -0.563 6.563 14 C 0.137 3.863 15 H 0.110 0.890 16 N -0.705 5.705 17 C 0.557 3.443 18 O -0.513 6.513 19 C -0.147 4.147 20 C -0.064 4.064 21 C 0.053 3.947 22 F -0.120 7.120 23 C 0.123 3.877 24 F -0.115 7.115 25 C -0.174 4.174 26 C 0.184 3.816 27 F -0.097 7.097 28 C 0.130 3.870 29 H 0.254 0.746 30 H 0.062 0.938 31 H 0.050 0.950 32 H 0.378 0.622 33 H 0.396 0.604 34 H 0.162 0.838 35 H 0.167 0.833 36 H 0.052 0.948 37 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.350 -21.980 3.090 22.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.203 4.203 3 Si 0.746 3.254 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.358 4.358 8 H 0.099 0.901 9 N -0.327 5.327 10 C 0.027 3.973 11 C 0.008 3.992 12 H 0.076 0.924 13 O -0.368 6.368 14 C 0.032 3.968 15 H 0.127 0.873 16 N -0.356 5.356 17 C 0.342 3.658 18 O -0.388 6.388 19 C -0.151 4.151 20 C -0.084 4.084 21 C 0.033 3.967 22 F -0.098 7.098 23 C 0.102 3.898 24 F -0.093 7.093 25 C -0.194 4.194 26 C 0.163 3.837 27 F -0.075 7.075 28 C 0.002 3.998 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.225 0.775 33 H 0.231 0.769 34 H 0.179 0.821 35 H 0.185 0.815 36 H 0.070 0.930 37 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 1.123 -21.816 2.011 21.938 hybrid contribution -0.217 0.739 0.942 1.217 sum 0.905 -21.077 2.953 21.303 Atomic orbital electron populations 1.69908 1.04948 1.25295 1.56965 1.24818 0.95789 0.97817 1.01863 0.86060 0.78569 0.83089 0.77691 1.21443 1.21625 1.20591 1.19091 0.90582 0.82008 1.44119 0.90079 1.44233 1.01171 0.99851 1.87445 1.21842 0.85459 0.87665 1.02317 1.23457 0.85466 0.98626 0.91616 0.92445 1.86456 1.19513 1.77663 1.53202 1.22369 0.94794 0.78198 1.01394 0.87253 1.45803 1.52333 1.11648 1.25769 1.17657 0.79792 0.83932 0.84376 1.90901 1.47293 1.77656 1.22996 1.20089 1.02762 0.95810 0.96485 1.21123 0.98044 0.93956 0.95231 1.17377 1.00438 0.93116 0.85808 1.91585 1.82617 1.90268 1.45337 1.17422 0.98668 0.79726 0.94008 1.91593 1.93552 1.34539 1.89658 1.20948 1.04919 0.96247 0.97261 1.17230 0.92507 0.90969 0.82978 1.91678 1.81277 1.90373 1.44177 1.21850 0.94821 0.85726 0.97364 0.93599 0.92014 0.93184 0.77498 0.76855 0.82101 0.81544 0.92979 0.95747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.26 10.31 55.49 0.57 -25.69 16 2 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 3 Si 0.92 21.77 29.55 -169.99 -5.02 16.75 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.23 -6.30 10.28 -15.06 -0.15 -6.46 16 8 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 9 N -0.60 -14.88 3.39 -170.08 -0.58 -15.46 16 10 C 0.15 3.49 5.15 -3.07 -0.02 3.47 16 11 C 0.07 1.19 3.97 -24.90 -0.10 1.09 16 12 H 0.06 0.85 8.00 -51.93 -0.42 0.44 16 13 O -0.56 -9.23 13.39 -35.23 -0.47 -9.70 16 14 C 0.14 2.45 3.15 -65.79 -0.21 2.24 16 15 H 0.11 2.27 7.54 -51.93 -0.39 1.87 16 16 N -0.70 -9.62 5.15 -52.76 -0.27 -9.89 16 17 C 0.56 8.09 7.76 -12.45 -0.10 7.99 16 18 O -0.51 -9.60 14.97 5.29 0.08 -9.52 16 19 C -0.15 -1.59 5.88 -104.91 -0.62 -2.20 16 20 C -0.06 -0.52 9.51 -39.13 -0.37 -0.89 16 21 C 0.05 0.44 7.29 -39.44 -0.29 0.16 16 22 F -0.12 -1.09 17.17 2.25 0.04 -1.05 16 23 C 0.12 1.00 7.31 -39.24 -0.29 0.71 16 24 F -0.12 -0.99 17.17 2.25 0.04 -0.95 16 25 C -0.17 -1.34 9.99 -39.51 -0.39 -1.74 16 26 C 0.18 1.92 7.28 -38.98 -0.28 1.64 16 27 F -0.10 -1.26 15.54 2.25 0.03 -1.22 16 28 C 0.13 2.65 6.93 -2.53 -0.02 2.64 16 29 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 30 H 0.06 1.60 7.30 -51.93 -0.38 1.22 16 31 H 0.05 1.23 7.51 -51.93 -0.39 0.84 16 32 H 0.38 4.66 9.12 45.56 0.42 5.08 16 33 H 0.40 4.01 6.59 -40.82 -0.27 3.74 16 34 H 0.16 0.93 6.40 -52.49 -0.34 0.59 16 35 H 0.17 0.88 8.06 -52.48 -0.42 0.46 16 36 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 330.90 15.07 4.99 4.99 Total: -1.00 -32.95 330.90 -6.10 -39.05 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -2.58 Total: 4.33 kcal Atomic # 6 Polarization: 11.30 SS G_CDS: -2.93 Total: 8.37 kcal Atomic # 7 Polarization: -50.76 SS G_CDS: -0.28 Total: -51.04 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -0.39 Total: -19.22 kcal Atomic # 9 Polarization: -3.33 SS G_CDS: 0.11 Total: -3.22 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.95 -6.10 -39.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077594017.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.706 kcal (2) G-P(sol) polarization free energy of solvation -32.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds