Wall clock time and date at job start Tue Mar 31 2020 04:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 119.99873 * 2 1 4 4 H 1.48501 * 109.47186 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47039 * 299.99579 * 3 2 1 6 6 H 1.48504 * 109.47183 * 59.99604 * 3 2 1 7 7 C 1.38816 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99966 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99656 * 0.02562 * 7 2 1 10 10 C 1.47023 * 125.65441 * 0.02562 * 9 7 2 11 11 C 1.54318 * 107.27001 * 178.90690 * 10 9 7 12 12 H 1.09000 * 110.71938 * 96.35245 * 11 10 9 13 13 O 1.42903 * 110.71964 * 219.44056 * 11 10 9 14 14 C 1.55155 * 103.10829 * 337.89518 * 11 10 9 15 15 H 1.08998 * 111.00699 * 277.34206 * 14 11 10 16 16 N 1.46494 * 111.00449 * 153.48555 * 14 11 10 17 17 C 1.34782 * 119.99807 * 155.00257 * 16 14 11 18 18 O 1.21602 * 120.00025 * 0.02562 * 17 16 14 19 19 C 1.47425 * 119.99934 * 180.02562 * 17 16 14 20 20 C 1.39978 * 120.16355 * 89.72836 * 19 17 16 21 21 F 1.35101 * 120.08126 * 359.97438 * 20 19 17 22 22 C 1.38094 * 119.83045 * 179.71774 * 20 19 17 23 23 C 1.38600 * 120.16873 * 0.55646 * 22 20 19 24 24 F 1.35101 * 119.83771 * 179.73928 * 23 22 20 25 25 C 1.38597 * 120.32616 * 359.71794 * 23 22 20 26 26 C 1.38099 * 120.16674 * 359.97438 * 25 23 22 27 27 F 1.35103 * 120.08443 * 180.02562 * 26 25 23 28 28 C 1.47431 * 125.64289 * 179.97438 * 9 7 2 29 29 H 0.97004 * 120.00608 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.88077 * 59.49204 * 10 9 7 31 31 H 1.09001 * 109.88086 * 298.32484 * 10 9 7 32 32 H 0.96700 * 114.00311 * 296.16377 * 13 11 10 33 33 H 0.96997 * 120.00555 * 335.00358 * 16 14 11 34 34 H 1.08007 * 119.91645 * 180.27009 * 22 20 19 35 35 H 1.08005 * 119.91815 * 179.97438 * 25 23 22 36 36 H 1.08998 * 110.36636 * 322.99796 * 28 9 7 37 37 H 1.08998 * 110.36754 * 85.21408 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1376 -2.5328 -0.0005 11 6 -0.4483 -4.0441 -0.0282 12 1 -0.6354 -4.4178 0.9785 13 8 -1.5622 -4.3157 -0.8813 14 6 0.8515 -4.6601 -0.6098 15 1 0.8581 -4.6027 -1.6982 16 7 1.0253 -6.0427 -0.1579 17 6 1.7548 -6.9053 -0.8930 18 8 2.2691 -6.5357 -1.9311 19 6 1.9292 -8.2968 -0.4386 20 6 1.0141 -9.2829 -0.8252 21 9 -0.0330 -8.9622 -1.6164 22 6 1.1874 -10.5854 -0.4003 23 6 2.2576 -10.9151 0.4164 24 9 2.4177 -12.1904 0.8325 25 6 3.1645 -9.9430 0.8080 26 6 3.0079 -8.6374 0.3860 27 9 3.8933 -7.6913 0.7683 28 6 1.9335 -3.7311 0.0005 29 1 -0.4851 0.8400 -0.0004 30 1 -0.5570 -2.0519 -0.8842 31 1 -0.5550 -2.0849 0.9013 32 1 -2.3925 -3.9205 -0.5819 33 1 0.6154 -6.3375 0.6703 34 1 0.4846 -11.3483 -0.7015 35 1 3.9958 -10.2071 1.4449 36 1 2.8334 -3.7402 -0.6144 37 1 2.1676 -4.0416 1.0188 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077602520.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:57 Heat of formation + Delta-G solvation = -179.473719 kcal Electronic energy + Delta-G solvation = -28050.750434 eV Core-core repulsion = 23378.873169 eV Total energy + Delta-G solvation = -4671.877265 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.098 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.37114 -50.35155 -50.23662 -41.36399 -39.84352 -39.03993 -36.71223 -35.74008 -33.76592 -32.24384 -31.87543 -30.16275 -28.80570 -26.55747 -25.15647 -24.44350 -22.64437 -22.17703 -21.86655 -19.89844 -19.42001 -19.15696 -18.89425 -18.29585 -17.68947 -17.32977 -17.24244 -17.12972 -16.73692 -16.63020 -16.48635 -16.33891 -15.93261 -15.70947 -15.64886 -15.46934 -14.95088 -14.51941 -14.29240 -13.96759 -13.81012 -13.56337 -13.26576 -13.19087 -13.09142 -12.93492 -12.79674 -12.75133 -12.07504 -11.91849 -11.63146 -11.50454 -10.96769 -10.80381 -10.38521 -10.19350 -10.18764 -9.00047 -7.90880 -5.28324 -0.68515 -0.41751 1.12988 1.45272 1.46704 1.56884 1.68231 1.88363 2.21657 2.45649 2.86571 2.93251 3.06895 3.20844 3.31471 3.44829 3.50468 3.61425 3.81630 3.99421 4.12087 4.34775 4.35953 4.38718 4.42408 4.43720 4.47258 4.73646 4.76478 4.85882 5.24850 5.35298 5.36272 5.41739 5.63540 6.10666 6.20672 6.83392 6.87519 7.02680 7.66222 8.28511 9.19089 Molecular weight = 330.10amu Principal moments of inertia in cm(-1) A = 0.022671 B = 0.002934 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.764831 B = 9542.193392 C =10340.764493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.060 4.060 3 Si 0.981 3.019 4 H -0.268 1.268 5 H -0.292 1.292 6 H -0.287 1.287 7 C -0.248 4.248 8 H 0.082 0.918 9 N -0.621 5.621 10 C 0.161 3.839 11 C 0.092 3.908 12 H 0.096 0.904 13 O -0.569 6.569 14 C 0.149 3.851 15 H 0.076 0.924 16 N -0.685 5.685 17 C 0.565 3.435 18 O -0.563 6.563 19 C -0.223 4.223 20 C 0.188 3.812 21 F -0.122 7.122 22 C -0.181 4.181 23 C 0.191 3.809 24 F -0.111 7.111 25 C -0.182 4.182 26 C 0.188 3.812 27 F -0.122 7.122 28 C 0.132 3.868 29 H 0.250 0.750 30 H 0.023 0.977 31 H 0.030 0.970 32 H 0.397 0.603 33 H 0.418 0.582 34 H 0.191 0.809 35 H 0.191 0.809 36 H 0.035 0.965 37 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.419 -25.779 5.392 26.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.254 4.254 3 Si 0.809 3.191 4 H -0.192 1.192 5 H -0.219 1.219 6 H -0.213 1.213 7 C -0.377 4.377 8 H 0.099 0.901 9 N -0.349 5.349 10 C 0.035 3.965 11 C 0.032 3.968 12 H 0.114 0.886 13 O -0.377 6.377 14 C 0.043 3.957 15 H 0.094 0.906 16 N -0.336 5.336 17 C 0.350 3.650 18 O -0.441 6.441 19 C -0.228 4.228 20 C 0.168 3.832 21 F -0.100 7.100 22 C -0.201 4.201 23 C 0.171 3.829 24 F -0.089 7.089 25 C -0.201 4.201 26 C 0.167 3.833 27 F -0.100 7.100 28 C 0.005 3.995 29 H 0.059 0.941 30 H 0.041 0.959 31 H 0.048 0.952 32 H 0.248 0.752 33 H 0.256 0.744 34 H 0.208 0.792 35 H 0.208 0.792 36 H 0.053 0.947 37 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 1.175 -25.617 4.328 26.007 hybrid contribution -0.272 1.703 0.341 1.758 sum 0.903 -23.915 4.669 24.383 Atomic orbital electron populations 1.70121 1.06133 1.25539 1.57766 1.25653 0.96759 1.00957 1.02007 0.84973 0.78100 0.79136 0.76870 1.19232 1.21913 1.21320 1.19477 0.91036 0.83372 1.43795 0.90058 1.44508 1.02277 1.00706 1.87396 1.21649 0.84323 0.91095 0.99384 1.23154 0.85576 0.94595 0.93472 0.88644 1.86436 1.20260 1.77530 1.53439 1.21900 0.94571 0.79965 0.99301 0.90586 1.45664 1.51739 1.09823 1.26345 1.18148 0.78207 0.85198 0.83416 1.90843 1.49082 1.78917 1.25276 1.19824 1.00731 0.94279 1.07985 1.16864 0.83836 0.91909 0.90614 1.91615 1.54171 1.93373 1.70820 1.21193 1.01476 0.95482 1.01905 1.16835 0.93354 0.79219 0.93519 1.91628 1.94862 1.34654 1.87709 1.21199 1.03818 0.89320 1.05769 1.16876 0.86172 0.86503 0.93716 1.91619 1.65900 1.63721 1.88747 1.21939 0.94742 0.84663 0.98139 0.94076 0.95909 0.95219 0.75243 0.74387 0.79153 0.79203 0.94702 0.93764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.99 10.31 21.65 0.22 -55.77 16 2 C -0.06 -3.44 5.49 84.86 0.47 -2.97 16 3 Si 0.98 45.92 29.55 68.60 2.03 47.95 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 6 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 7 C -0.25 -14.15 10.28 84.03 0.86 -13.29 16 8 H 0.08 4.49 7.83 -2.91 -0.02 4.47 16 9 N -0.62 -32.47 3.40 -691.57 -2.35 -34.82 16 10 C 0.16 7.76 5.15 86.73 0.45 8.21 16 11 C 0.09 3.31 3.97 31.78 0.13 3.44 16 12 H 0.10 2.78 8.00 -2.39 -0.02 2.76 16 13 O -0.57 -19.06 13.39 -148.98 -1.99 -21.06 16 14 C 0.15 5.69 3.16 46.46 0.15 5.83 16 15 H 0.08 3.45 7.54 -2.39 -0.02 3.43 16 16 N -0.69 -20.49 5.20 -438.89 -2.28 -22.78 16 17 C 0.57 18.16 6.53 86.66 0.57 18.73 16 18 O -0.56 -23.52 16.75 -4.04 -0.07 -23.59 16 19 C -0.22 -5.11 5.64 -20.01 -0.11 -5.22 16 20 C 0.19 3.49 7.29 22.66 0.17 3.66 16 21 F -0.12 -2.76 16.83 44.97 0.76 -2.01 16 22 C -0.18 -2.02 9.98 22.32 0.22 -1.80 16 23 C 0.19 1.95 7.30 22.44 0.16 2.12 16 24 F -0.11 -1.07 17.26 44.97 0.78 -0.30 16 25 C -0.18 -2.07 9.99 22.32 0.22 -1.85 16 26 C 0.19 3.53 7.29 22.66 0.17 3.69 16 27 F -0.12 -2.81 16.83 44.97 0.76 -2.05 16 28 C 0.13 5.73 6.94 86.93 0.60 6.33 16 29 H 0.25 14.28 8.31 -92.70 -0.77 13.51 16 30 H 0.02 1.26 7.30 -2.39 -0.02 1.24 16 31 H 0.03 1.53 7.51 -2.39 -0.02 1.51 16 32 H 0.40 9.83 9.12 -74.06 -0.68 9.16 16 33 H 0.42 9.36 8.55 -92.71 -0.79 8.57 16 34 H 0.19 1.07 8.06 -2.91 -0.02 1.04 16 35 H 0.19 1.14 8.06 -2.91 -0.02 1.11 16 36 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -75.67 336.38 1.59 -74.08 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -0.30 Total: 13.45 kcal Atomic # 6 Polarization: 22.84 SS G_CDS: 4.04 Total: 26.88 kcal Atomic # 7 Polarization: -108.95 SS G_CDS: -4.41 Total: -113.36 kcal Atomic # 8 Polarization: -42.59 SS G_CDS: -2.06 Total: -44.65 kcal Atomic # 9 Polarization: -6.65 SS G_CDS: 2.29 Total: -4.36 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -75.67 1.59 -74.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077602520.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.394 kcal (2) G-P(sol) polarization free energy of solvation -75.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds