Wall clock time and date at job start Tue Mar 31 2020 05:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86793 * 120.00081 * 2 1 4 4 H 1.48502 * 109.47348 * 269.99770 * 3 2 1 5 5 H 1.48497 * 109.47487 * 29.99883 * 3 2 1 6 6 H 1.48505 * 109.46970 * 150.00214 * 3 2 1 7 7 C 1.38813 * 119.99425 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99498 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00563 * 0.02562 * 7 2 1 10 10 C 1.47026 * 125.64362 * 0.02562 * 9 7 2 11 11 C 1.54330 * 107.26840 * 178.90400 * 10 9 7 12 12 H 1.08998 * 110.71700 * 96.16950 * 11 10 9 13 13 O 1.42891 * 110.72049 * 219.44172 * 11 10 9 14 14 C 1.55155 * 102.94292 * 337.81024 * 11 10 9 15 15 H 1.09001 * 111.00015 * 277.42463 * 14 11 10 16 16 N 1.46494 * 111.03951 * 153.59038 * 14 11 10 17 17 C 1.34773 * 120.00338 * 161.32787 * 16 14 11 18 18 O 1.21568 * 120.00094 * 0.02562 * 17 16 14 19 19 C 1.47734 * 120.00481 * 179.97438 * 17 16 14 20 20 C 1.39630 * 120.09575 * 359.72382 * 19 17 16 21 21 C 1.38079 * 119.89474 * 179.76594 * 20 19 17 22 22 F 1.35102 * 119.94904 * 180.23384 * 21 20 19 23 23 C 1.38778 * 120.10210 * 0.48751 * 21 20 19 24 24 F 1.35098 * 119.89966 * 179.76392 * 23 21 20 25 25 C 1.38790 * 120.20454 * 359.79051 * 23 21 20 26 26 F 1.35098 * 119.95103 * 179.97438 * 25 23 21 27 27 C 1.38078 * 120.09593 * 359.95363 * 25 23 21 28 28 C 1.47420 * 125.65209 * 179.97438 * 9 7 2 29 29 H 0.97001 * 119.99700 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.88351 * 298.31999 * 10 9 7 31 31 H 1.08998 * 109.88379 * 59.48789 * 10 9 7 32 32 H 0.96706 * 114.00496 * 298.55083 * 13 11 10 33 33 H 0.97001 * 119.99882 * 341.32548 * 16 14 11 34 34 H 1.07999 * 120.05231 * 0.02562 * 20 19 17 35 35 H 1.07999 * 120.04799 * 180.02562 * 27 25 23 36 36 H 1.08997 * 110.36858 * 323.00452 * 28 9 7 37 37 H 1.08999 * 110.36307 * 85.32666 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0101 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1377 -2.5327 -0.0005 11 6 -0.4487 -4.0441 -0.0283 12 1 -0.6325 -4.4185 0.9787 13 8 -1.5624 -4.3155 -0.8813 14 6 0.8521 -4.6559 -0.6123 15 1 0.8578 -4.5955 -1.7006 16 7 1.0295 -6.0395 -0.1650 17 6 1.8622 -6.8622 -0.8329 18 8 2.4666 -6.4559 -1.8063 19 6 2.0416 -8.2574 -0.3816 20 6 1.3537 -8.7243 0.7403 21 6 1.5207 -10.0305 1.1556 22 9 0.8520 -10.4847 2.2381 23 6 2.3783 -10.8759 0.4660 24 9 2.5423 -12.1518 0.8788 25 6 3.0686 -10.4146 -0.6462 26 9 3.9026 -11.2419 -1.3134 27 6 2.9038 -9.1115 -1.0720 28 6 1.9332 -3.7312 0.0005 29 1 -0.4850 0.8401 -0.0004 30 1 -0.5551 -2.0849 0.9013 31 1 -0.5571 -2.0517 -0.8841 32 1 -2.3848 -3.8903 -0.6018 33 1 0.5476 -6.3636 0.6119 34 1 0.6888 -8.0660 1.2797 35 1 3.4410 -8.7534 -1.9377 36 1 2.8332 -3.7404 -0.6143 37 1 2.1655 -4.0424 1.0190 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077720964.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:12 Heat of formation + Delta-G solvation = -152.862495 kcal Electronic energy + Delta-G solvation = -27554.526059 eV Core-core repulsion = 22883.802743 eV Total energy + Delta-G solvation = -4670.723316 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.098 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.22204 -49.61875 -48.90126 -40.51685 -38.73178 -37.70080 -35.17238 -34.38102 -32.08915 -31.15755 -31.02545 -28.46588 -27.17576 -25.05215 -24.14607 -23.73693 -21.28560 -20.68687 -20.32206 -19.06622 -18.39788 -18.11512 -17.25492 -17.23620 -17.00216 -16.60819 -16.36838 -15.90513 -15.75073 -15.38175 -15.34327 -15.00142 -14.83523 -14.79831 -14.26727 -14.17331 -13.34800 -13.28206 -13.05018 -12.77932 -12.69765 -12.27801 -12.23526 -12.10500 -11.58996 -11.33737 -10.96316 -10.85911 -10.30769 -10.16376 -10.00622 -9.90685 -9.53202 -9.47246 -9.45480 -9.04623 -8.71238 -6.98996 -5.82728 -3.17412 -0.16071 0.21591 2.12987 2.69597 2.93711 3.14765 3.35988 3.41335 3.42673 3.59060 3.65968 3.84156 4.08981 4.33296 4.38125 4.51551 4.84891 4.89218 5.05436 5.12286 5.24410 5.35593 5.43186 5.48537 5.55090 5.70143 5.95699 5.97870 6.00600 6.31696 6.51461 6.71852 7.23153 7.35913 7.40518 7.66553 8.01220 8.02800 8.11418 9.08559 9.68572 10.30534 11.29179 Molecular weight = 330.10amu Principal moments of inertia in cm(-1) A = 0.022431 B = 0.002564 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.960016 B =10919.934811 C =11404.070234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.007 4.007 3 Si 0.916 3.084 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.230 4.230 8 H 0.081 0.919 9 N -0.599 5.599 10 C 0.152 3.848 11 C 0.069 3.931 12 H 0.059 0.941 13 O -0.564 6.564 14 C 0.138 3.862 15 H 0.107 0.893 16 N -0.704 5.704 17 C 0.559 3.441 18 O -0.519 6.519 19 C -0.076 4.076 20 C -0.104 4.104 21 C 0.096 3.904 22 F -0.115 7.115 23 C 0.052 3.948 24 F -0.113 7.113 25 C 0.095 3.905 26 F -0.114 7.114 27 C -0.077 4.077 28 C 0.130 3.870 29 H 0.254 0.746 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.379 0.621 33 H 0.398 0.602 34 H 0.159 0.841 35 H 0.170 0.830 36 H 0.053 0.947 37 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.016 -20.500 2.748 20.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.203 4.203 3 Si 0.746 3.254 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.358 4.358 8 H 0.099 0.901 9 N -0.327 5.327 10 C 0.027 3.973 11 C 0.008 3.992 12 H 0.077 0.923 13 O -0.369 6.369 14 C 0.033 3.967 15 H 0.125 0.875 16 N -0.354 5.354 17 C 0.344 3.656 18 O -0.395 6.395 19 C -0.080 4.080 20 C -0.124 4.124 21 C 0.075 3.925 22 F -0.093 7.093 23 C 0.031 3.969 24 F -0.091 7.091 25 C 0.075 3.925 26 F -0.092 7.092 27 C -0.097 4.097 28 C 0.003 3.997 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.226 0.774 33 H 0.233 0.767 34 H 0.177 0.823 35 H 0.187 0.813 36 H 0.071 0.929 37 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 0.817 -20.389 1.761 20.482 hybrid contribution -0.227 0.486 0.987 1.123 sum 0.591 -19.903 2.748 20.101 Atomic orbital electron populations 1.69909 1.04952 1.25312 1.56971 1.24817 0.95795 0.97828 1.01847 0.86057 0.78579 0.83066 0.77696 1.21440 1.21620 1.20581 1.19090 0.90589 0.81999 1.44123 0.90068 1.44238 1.01147 0.99875 1.87462 1.21862 0.85529 0.87589 1.02336 1.23448 0.85390 0.98702 0.91610 0.92322 1.86448 1.20436 1.75398 1.54634 1.22377 0.94980 0.78224 1.01125 0.87514 1.45850 1.45130 1.12525 1.31920 1.17764 0.80241 0.84130 0.83501 1.90853 1.46411 1.76083 1.26172 1.19752 0.97693 0.95181 0.95346 1.21342 1.00478 0.93639 0.96920 1.17099 0.95559 0.92476 0.87334 1.91603 1.77806 1.89105 1.50792 1.17797 1.01348 0.81056 0.96733 1.91583 1.94138 1.34062 1.89364 1.17149 0.93839 0.89324 0.92238 1.91600 1.68314 1.70743 1.78591 1.21281 0.97567 0.89819 1.01017 1.21853 0.94847 0.85666 0.97382 0.93590 0.93138 0.91984 0.77381 0.76705 0.82324 0.81267 0.92869 0.95742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.98 10.31 55.49 0.57 -25.40 16 2 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 3 Si 0.92 21.56 29.55 -169.99 -5.02 16.54 16 4 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 7 C -0.23 -6.22 10.28 -15.06 -0.15 -6.38 16 8 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 9 N -0.60 -14.64 3.39 -170.08 -0.58 -15.22 16 10 C 0.15 3.41 5.14 -3.06 -0.02 3.39 16 11 C 0.07 1.15 3.96 -24.89 -0.10 1.05 16 12 H 0.06 0.84 8.00 -51.93 -0.42 0.43 16 13 O -0.56 -8.86 13.39 -35.23 -0.47 -9.33 16 14 C 0.14 2.35 3.04 -65.79 -0.20 2.15 16 15 H 0.11 2.11 7.73 -51.93 -0.40 1.70 16 16 N -0.70 -9.00 5.18 -52.71 -0.27 -9.27 16 17 C 0.56 7.37 7.77 -12.38 -0.10 7.27 16 18 O -0.52 -8.83 16.09 5.31 0.09 -8.74 16 19 C -0.08 -0.74 5.87 -104.98 -0.62 -1.36 16 20 C -0.10 -0.81 9.51 -39.12 -0.37 -1.18 16 21 C 0.10 0.82 7.29 -39.44 -0.29 0.53 16 22 F -0.11 -1.05 17.17 2.25 0.04 -1.01 16 23 C 0.05 0.49 7.32 -39.18 -0.29 0.20 16 24 F -0.11 -1.17 17.08 2.25 0.04 -1.13 16 25 C 0.10 0.87 7.30 -39.44 -0.29 0.59 16 26 F -0.11 -1.13 17.17 2.25 0.04 -1.09 16 27 C -0.08 -0.72 9.57 -39.12 -0.37 -1.09 16 28 C 0.13 2.59 6.93 -2.54 -0.02 2.58 16 29 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 30 H 0.05 1.22 7.51 -51.93 -0.39 0.83 16 31 H 0.06 1.58 7.30 -51.93 -0.38 1.20 16 32 H 0.38 4.50 9.11 45.56 0.42 4.92 16 33 H 0.40 3.76 6.54 -40.82 -0.27 3.49 16 34 H 0.16 0.86 6.40 -52.49 -0.34 0.53 16 35 H 0.17 1.53 7.65 -52.49 -0.40 1.13 16 36 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 332.77 15.07 5.01 5.01 Total: -1.00 -31.74 332.77 -6.03 -37.77 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -2.57 Total: 4.40 kcal Atomic # 6 Polarization: 10.38 SS G_CDS: -2.90 Total: 7.48 kcal Atomic # 7 Polarization: -49.61 SS G_CDS: -0.28 Total: -49.89 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: -0.39 Total: -18.08 kcal Atomic # 9 Polarization: -3.35 SS G_CDS: 0.12 Total: -3.23 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.74 -6.03 -37.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077720964.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.093 kcal (2) G-P(sol) polarization free energy of solvation -31.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds