Wall clock time and date at job start Tue Mar 31 2020 05:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86804 * 120.00339 * 2 1 4 4 H 1.48506 * 109.46755 * 274.14484 * 3 2 1 5 5 H 1.48499 * 109.46761 * 34.13706 * 3 2 1 6 6 H 1.48495 * 109.47270 * 154.14058 * 3 2 1 7 7 C 1.38814 * 120.00091 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99925 * 170.42013 * 7 2 1 9 9 N 1.36938 * 119.99682 * 350.42533 * 7 2 1 10 10 C 1.47027 * 125.64394 * 169.94059 * 9 7 2 11 11 C 1.54324 * 107.26948 * 178.97296 * 10 9 7 12 12 H 1.09001 * 110.71764 * 96.34819 * 11 10 9 13 13 N 1.46495 * 110.72089 * 219.44549 * 11 10 9 14 14 C 1.34776 * 119.99800 * 273.26733 * 13 11 10 15 15 O 1.21587 * 119.99935 * 0.27879 * 14 13 11 16 16 C 1.47575 * 120.00027 * 180.27479 * 14 13 11 17 17 C 1.39753 * 120.12843 * 0.02562 * 16 14 13 18 18 C 1.37923 * 119.87368 * 179.97438 * 17 16 14 19 19 F 1.35108 * 119.92731 * 179.97438 * 18 17 16 20 20 C 1.38942 * 120.14835 * 359.97438 * 18 17 16 21 21 F 1.35096 * 119.86951 * 179.97438 * 20 18 17 22 22 C 1.38456 * 120.26537 * 359.97438 * 20 18 17 23 23 C 1.38212 * 120.11817 * 359.74258 * 22 20 18 24 24 F 1.35103 * 120.07335 * 180.27609 * 23 22 20 25 25 C 1.55157 * 102.94192 * 337.80810 * 11 10 9 26 26 H 1.09002 * 111.00625 * 153.57299 * 25 11 10 27 27 O 1.42898 * 111.00687 * 277.42628 * 25 11 10 28 28 C 1.47420 * 125.64953 * 349.98167 * 9 7 2 29 29 H 0.97006 * 119.99906 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.88160 * 59.56103 * 10 9 7 31 31 H 1.08998 * 109.88279 * 298.39083 * 10 9 7 32 32 H 0.97003 * 120.00061 * 93.55017 * 13 11 10 33 33 H 1.07998 * 120.06486 * 359.94826 * 17 16 14 34 34 H 1.07996 * 119.93957 * 180.02562 * 22 20 18 35 35 H 0.96701 * 114.00319 * 180.02562 * 27 25 11 36 36 H 1.08998 * 110.36869 * 322.92606 * 28 9 7 37 37 H 1.08994 * 110.37247 * 85.14986 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4101 2.0969 -1.3965 5 1 1.4942 2.6258 0.7857 6 1 3.5888 1.4164 0.6106 7 6 2.0102 -1.2022 0.0005 8 1 3.0789 -1.2087 -0.1551 9 7 1.3398 -2.3797 0.1983 10 6 1.9020 -3.7263 0.0187 11 6 0.7932 -4.7375 0.3790 12 1 0.2747 -5.0769 -0.5177 13 7 1.3487 -5.8750 1.1161 14 6 1.8498 -6.9320 0.4466 15 8 1.8454 -6.9391 -0.7692 16 6 2.4038 -8.0806 1.1892 17 6 2.4098 -8.0755 2.5867 18 6 2.9285 -9.1520 3.2754 19 9 2.9353 -9.1480 4.6265 20 6 3.4440 -10.2407 2.5829 21 9 3.9511 -11.2920 3.2632 22 6 3.4401 -10.2525 1.1984 23 6 2.9178 -9.1821 0.4972 24 9 2.9093 -9.1971 -0.8537 25 6 -0.1541 -3.9065 1.2843 26 1 -1.1723 -4.2934 1.2436 27 8 0.3246 -3.8706 2.6302 28 6 -0.0653 -2.5071 0.6257 29 1 -0.4850 0.8401 0.0004 30 1 2.7571 -3.8624 0.6809 31 1 2.2076 -3.8651 -1.0183 32 1 1.3521 -5.8694 2.0861 33 1 2.0095 -7.2300 3.1264 34 1 3.8418 -11.1016 0.6655 35 1 -0.2352 -3.3627 3.2334 36 1 -0.3135 -1.7309 1.3496 37 1 -0.7307 -2.4484 -0.2355 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083737675.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:15 Heat of formation + Delta-G solvation = -151.288768 kcal Electronic energy + Delta-G solvation = -27948.569798 eV Core-core repulsion = 23277.914724 eV Total energy + Delta-G solvation = -4670.655074 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.098 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -50.00578 -49.27749 -49.05720 -40.29117 -38.71028 -37.71556 -34.84191 -34.21918 -32.22293 -31.32573 -30.56446 -28.56493 -27.15541 -24.98259 -24.33396 -23.42402 -21.23836 -20.65622 -19.94250 -18.95424 -18.38560 -18.13045 -17.35152 -16.97477 -16.92528 -16.66577 -15.88471 -15.86454 -15.45902 -15.34987 -14.99474 -14.94248 -14.88329 -14.70186 -14.33795 -14.06535 -13.71023 -13.11007 -12.97745 -12.75395 -12.65460 -12.25360 -12.16030 -11.91099 -11.41725 -11.06703 -10.86291 -10.71244 -10.50259 -10.19186 -10.00038 -9.88246 -9.78565 -9.36192 -9.15620 -8.85995 -8.66406 -6.85693 -5.81117 -3.12661 -0.09082 0.27584 2.21962 2.93083 3.07268 3.18605 3.37338 3.43346 3.44190 3.45598 3.81964 3.84294 4.14580 4.41077 4.47865 4.58953 4.91637 4.99526 5.07300 5.22245 5.26066 5.30632 5.38837 5.42387 5.63652 5.82621 5.92821 6.05662 6.15942 6.36493 6.67040 6.83348 7.21183 7.35782 7.54272 7.68246 7.97735 8.17813 8.19555 9.12537 9.74289 10.39703 11.32458 Molecular weight = 330.10amu Principal moments of inertia in cm(-1) A = 0.020691 B = 0.002809 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.907515 B = 9966.728097 C =10407.408989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.008 4.008 3 Si 0.913 3.087 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.224 4.224 8 H 0.077 0.923 9 N -0.595 5.595 10 C 0.131 3.869 11 C 0.143 3.857 12 H 0.105 0.895 13 N -0.698 5.698 14 C 0.553 3.447 15 O -0.519 6.519 16 C -0.147 4.147 17 C -0.063 4.063 18 C 0.053 3.947 19 F -0.119 7.119 20 C 0.122 3.878 21 F -0.116 7.116 22 C -0.175 4.175 23 C 0.183 3.817 24 F -0.098 7.098 25 C 0.066 3.934 26 H 0.063 0.937 27 O -0.563 6.563 28 C 0.149 3.851 29 H 0.253 0.747 30 H 0.030 0.970 31 H 0.031 0.969 32 H 0.407 0.593 33 H 0.164 0.836 34 H 0.167 0.833 35 H 0.380 0.620 36 H 0.078 0.922 37 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.945 -20.380 7.628 21.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.353 4.353 8 H 0.095 0.905 9 N -0.322 5.322 10 C 0.004 3.996 11 C 0.039 3.961 12 H 0.123 0.877 13 N -0.350 5.350 14 C 0.338 3.662 15 O -0.395 6.395 16 C -0.152 4.152 17 C -0.082 4.082 18 C 0.033 3.967 19 F -0.098 7.098 20 C 0.101 3.899 21 F -0.094 7.094 22 C -0.195 4.195 23 C 0.162 3.838 24 F -0.076 7.076 25 C 0.006 3.994 26 H 0.081 0.919 27 O -0.369 6.369 28 C 0.023 3.977 29 H 0.063 0.937 30 H 0.048 0.952 31 H 0.049 0.951 32 H 0.244 0.756 33 H 0.181 0.819 34 H 0.184 0.816 35 H 0.228 0.772 36 H 0.096 0.904 37 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 2.384 -20.535 6.498 21.670 hybrid contribution 0.117 1.037 0.814 1.324 sum 2.501 -19.497 7.312 20.973 Atomic orbital electron populations 1.69911 1.04974 1.25274 1.56835 1.24796 0.95668 0.97824 1.02100 0.86095 0.78759 0.83308 0.77563 1.21571 1.21616 1.20582 1.19033 0.91238 0.82583 1.42399 0.90546 1.44258 1.09028 0.99711 1.79173 1.21605 0.94283 0.85505 0.98202 1.22224 0.95048 0.84381 0.94480 0.87730 1.45732 1.60852 1.17487 1.10906 1.17731 0.79001 0.82131 0.87302 1.90886 1.55787 1.80279 1.12582 1.20088 1.05411 0.96492 0.93170 1.21187 0.96709 0.97653 0.92692 1.17389 1.05537 0.95652 0.78150 1.91589 1.94628 1.96562 1.27009 1.17424 0.98157 0.84764 0.89529 1.91588 1.84201 1.54120 1.79464 1.20937 1.05450 1.01080 0.91997 1.17228 0.95690 0.92661 0.78202 1.91673 1.93143 1.96127 1.26636 1.23615 0.94671 0.98711 0.82400 0.91945 1.86225 1.55295 1.76288 1.19097 1.22074 0.86957 0.90979 0.97720 0.93672 0.95212 0.95118 0.75623 0.81886 0.81588 0.77185 0.90369 0.94404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.20 10.68 55.49 0.59 -25.61 16 2 C -0.01 -0.21 5.40 -17.43 -0.09 -0.31 16 3 Si 0.91 21.83 29.56 -169.99 -5.03 16.80 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.22 -6.22 10.24 -15.06 -0.15 -6.37 16 8 H 0.08 2.09 7.85 -52.49 -0.41 1.67 16 9 N -0.60 -14.92 3.39 -170.07 -0.58 -15.50 16 10 C 0.13 2.82 6.99 -3.06 -0.02 2.79 16 11 C 0.14 2.49 3.12 -66.10 -0.21 2.29 16 12 H 0.10 1.86 7.69 -51.93 -0.40 1.46 16 13 N -0.70 -9.96 5.04 -53.06 -0.27 -10.22 16 14 C 0.55 8.13 7.76 -12.45 -0.10 8.03 16 15 O -0.52 -9.54 15.05 5.29 0.08 -9.46 16 16 C -0.15 -1.65 5.88 -104.91 -0.62 -2.27 16 17 C -0.06 -0.56 9.51 -39.13 -0.37 -0.93 16 18 C 0.05 0.48 7.29 -39.44 -0.29 0.19 16 19 F -0.12 -1.16 17.17 2.25 0.04 -1.12 16 20 C 0.12 1.04 7.31 -39.24 -0.29 0.75 16 21 F -0.12 -1.03 17.17 2.25 0.04 -0.99 16 22 C -0.18 -1.40 9.99 -39.51 -0.39 -1.79 16 23 C 0.18 1.95 7.28 -38.98 -0.28 1.67 16 24 F -0.10 -1.27 15.54 2.25 0.04 -1.23 16 25 C 0.07 1.11 4.28 -24.58 -0.11 1.00 16 26 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 27 O -0.56 -8.49 12.23 -35.23 -0.43 -8.92 16 28 C 0.15 3.32 5.16 -2.53 -0.01 3.31 16 29 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.03 0.65 8.03 -51.93 -0.42 0.24 16 31 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.41 4.94 5.59 -40.82 -0.23 4.71 16 33 H 0.16 1.18 6.40 -52.49 -0.34 0.85 16 34 H 0.17 0.92 8.06 -52.49 -0.42 0.49 16 35 H 0.38 4.45 9.12 45.56 0.42 4.86 16 36 H 0.08 1.91 6.94 -51.93 -0.36 1.55 16 37 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 LS Contribution 329.71 15.07 4.97 4.97 Total: -1.00 -32.39 329.71 -6.04 -38.43 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -2.56 Total: 4.48 kcal Atomic # 6 Polarization: 11.30 SS G_CDS: -2.93 Total: 8.37 kcal Atomic # 7 Polarization: -51.08 SS G_CDS: -0.25 Total: -51.33 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: -0.35 Total: -18.37 kcal Atomic # 9 Polarization: -3.46 SS G_CDS: 0.11 Total: -3.35 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.03 Total: 16.80 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.39 -6.04 -38.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083737675.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.859 kcal (2) G-P(sol) polarization free energy of solvation -32.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds