Wall clock time and date at job start Tue Mar 31 2020 06:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86792 * 119.99992 * 2 1 4 4 H 1.48503 * 109.47231 * 93.06551 * 3 2 1 5 5 H 1.48507 * 109.47102 * 213.06420 * 3 2 1 6 6 H 1.48502 * 109.47592 * 333.06340 * 3 2 1 7 7 C 1.38808 * 119.99792 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00380 * 18.89897 * 7 2 1 9 9 N 1.36940 * 119.99865 * 198.90084 * 7 2 1 10 10 C 1.46930 * 120.62790 * 209.32549 * 9 7 2 11 11 C 1.52769 * 109.00447 * 233.58167 * 10 9 7 12 12 C 1.53037 * 109.38312 * 305.58681 * 11 10 9 13 13 H 1.08996 * 109.45997 * 181.26405 * 12 11 10 14 14 N 1.46503 * 109.45077 * 301.22962 * 12 11 10 15 15 C 1.34772 * 119.99725 * 275.06358 * 14 12 11 16 16 O 1.21692 * 120.00370 * 359.97438 * 15 14 12 17 17 C 1.46661 * 119.99978 * 180.02562 * 15 14 12 18 18 C 1.36544 * 125.98781 * 179.97438 * 17 15 14 19 19 C 1.40368 * 106.70522 * 179.97438 * 18 17 15 20 20 C 1.35122 * 107.11854 * 0.02562 * 19 18 17 21 21 C 1.50695 * 125.62037 * 179.97438 * 20 19 18 22 22 F 1.39899 * 109.47684 * 300.00464 * 21 20 19 23 23 F 1.39908 * 109.46866 * 60.00427 * 21 20 19 24 24 O 1.33935 * 108.76694 * 359.75387 * 20 19 18 25 25 C 1.53041 * 109.53688 * 61.24287 * 12 11 10 26 26 H 1.08992 * 109.50072 * 58.58364 * 25 12 11 27 27 O 1.42902 * 109.52452 * 178.66743 * 25 12 11 28 28 C 1.46926 * 120.63233 * 29.59955 * 9 7 2 29 29 H 0.97002 * 119.99787 * 359.97438 * 1 2 3 30 30 H 1.08994 * 109.58907 * 353.41298 * 10 9 7 31 31 H 1.08997 * 109.58834 * 113.84212 * 10 9 7 32 32 H 1.09002 * 109.55864 * 185.55349 * 11 10 9 33 33 H 1.09003 * 109.35767 * 65.50028 * 11 10 9 34 34 H 0.96998 * 120.00190 * 95.05922 * 14 12 11 35 35 H 1.07994 * 126.64613 * 359.97438 * 18 17 15 36 36 H 1.08004 * 126.44153 * 179.97438 * 19 18 17 37 37 H 1.09003 * 109.47528 * 180.02562 * 21 20 19 38 38 H 0.96698 * 114.00278 * 179.85343 * 27 25 12 39 39 H 1.08996 * 109.58530 * 246.16096 * 28 9 7 40 40 H 1.09004 * 109.58112 * 6.44247 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.5625 2.0089 1.3981 5 1 3.5138 1.4597 -0.7639 6 1 1.4168 2.6705 -0.6342 7 6 2.0102 -1.2021 -0.0005 8 1 1.5139 -2.1121 -0.3039 9 7 3.3242 -1.2343 0.3836 10 6 4.2419 -2.2387 -0.1712 11 6 4.9208 -2.9812 0.9784 12 6 5.5867 -1.9694 1.9137 13 1 6.0905 -2.4990 2.7222 14 7 6.5663 -1.1811 1.1617 15 6 7.8175 -1.6505 0.9868 16 8 8.1337 -2.7288 1.4539 17 6 8.7983 -0.8613 0.2345 18 6 10.0928 -1.2168 -0.0150 19 6 10.6607 -0.1738 -0.7631 20 6 9.7004 0.7612 -0.9349 21 6 9.8635 2.0601 -1.6812 22 9 10.8694 2.8220 -1.0771 23 9 10.2141 1.7940 -3.0092 24 8 8.5781 0.3411 -0.3366 25 6 4.5237 -1.0371 2.4994 26 1 3.7808 -1.6253 3.0380 27 8 5.1416 -0.1122 3.3965 28 6 3.8417 -0.2689 1.3629 29 1 -0.4850 0.8401 0.0004 30 1 3.6824 -2.9471 -0.7820 31 1 4.9985 -1.7451 -0.7810 32 1 5.6752 -3.6595 0.5798 33 1 4.1741 -3.5512 1.5313 34 1 6.3143 -0.3215 0.7896 35 1 10.5844 -2.1247 0.3019 36 1 11.6749 -0.1268 -1.1315 37 1 8.9248 2.6136 -1.6568 38 1 4.5256 0.5120 3.8038 39 1 4.5650 0.3886 0.8806 40 1 3.0184 0.3236 1.7620 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090772051.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:24 Heat of formation + Delta-G solvation = -134.226002 kcal Electronic energy + Delta-G solvation = -29078.686369 eV Core-core repulsion = 24532.231497 eV Total energy + Delta-G solvation = -4546.454872 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.122 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.52486 -47.52655 -43.10544 -40.07478 -38.20315 -35.62874 -34.51744 -33.54022 -32.29638 -31.49250 -30.37230 -29.31415 -26.93620 -25.39327 -23.36351 -22.86104 -22.07053 -21.75093 -20.73661 -19.12265 -18.96447 -17.89699 -17.85433 -17.56925 -17.10537 -16.95833 -16.53513 -15.88698 -15.37855 -14.94030 -14.68650 -14.39159 -14.35521 -14.06155 -13.92266 -13.87704 -13.64338 -13.50725 -13.37382 -13.34615 -13.06703 -12.63833 -12.39056 -11.94186 -11.75437 -11.63323 -11.20650 -11.09881 -10.62850 -10.46955 -10.44962 -10.34801 -9.93760 -9.75625 -9.61169 -9.27636 -8.94946 -8.74453 -7.13947 -6.09873 -3.50234 0.58763 1.84234 1.85968 2.98199 3.03314 3.13718 3.34476 3.36300 3.47727 3.70641 4.12850 4.22794 4.36556 4.44551 4.47040 4.64740 4.79407 5.04586 5.17834 5.18545 5.25149 5.36601 5.41856 5.46307 5.57328 5.66738 5.86356 5.88723 6.06849 6.18100 6.24557 6.32306 6.37610 6.47534 6.52251 6.70780 7.42685 7.70873 7.86510 8.00739 8.18753 8.76409 9.54515 9.90377 11.05847 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.012474 B = 0.004021 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.076561 B = 6961.171545 C = 8193.539258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.026 3.974 3 Si 0.885 3.115 4 H -0.287 1.287 5 H -0.273 1.273 6 H -0.301 1.301 7 C -0.265 4.265 8 H 0.088 0.912 9 N -0.600 5.600 10 C 0.146 3.854 11 C -0.147 4.147 12 C 0.163 3.837 13 H 0.090 0.910 14 N -0.693 5.693 15 C 0.600 3.400 16 O -0.520 6.520 17 C -0.036 4.036 18 C -0.131 4.131 19 C -0.158 4.158 20 C -0.083 4.083 21 C 0.359 3.641 22 F -0.183 7.183 23 F -0.182 7.182 24 O -0.144 6.144 25 C 0.077 3.923 26 H 0.077 0.923 27 O -0.571 6.571 28 C 0.095 3.905 29 H 0.265 0.735 30 H 0.069 0.931 31 H 0.023 0.977 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.407 0.593 35 H 0.169 0.831 36 H 0.164 0.836 37 H 0.136 0.864 38 H 0.379 0.621 39 H 0.027 0.973 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.749 2.097 0.299 18.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.173 4.173 3 Si 0.715 3.285 4 H -0.215 1.215 5 H -0.198 1.198 6 H -0.229 1.229 7 C -0.393 4.393 8 H 0.106 0.894 9 N -0.325 5.325 10 C 0.021 3.979 11 C -0.187 4.187 12 C 0.059 3.941 13 H 0.108 0.892 14 N -0.343 5.343 15 C 0.385 3.615 16 O -0.398 6.398 17 C -0.089 4.089 18 C -0.151 4.151 19 C -0.177 4.177 20 C -0.136 4.136 21 C 0.305 3.695 22 F -0.164 7.164 23 F -0.164 7.164 24 O -0.039 6.039 25 C 0.016 3.984 26 H 0.095 0.905 27 O -0.376 6.376 28 C -0.031 4.031 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.041 0.959 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.244 0.756 35 H 0.187 0.813 36 H 0.181 0.819 37 H 0.153 0.847 38 H 0.226 0.774 39 H 0.045 0.955 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 19.035 1.260 0.434 19.081 hybrid contribution 0.038 1.717 -0.117 1.721 sum 19.073 2.977 0.317 19.307 Atomic orbital electron populations 1.69809 1.05711 1.26759 1.52379 1.25345 0.95248 0.97593 0.99129 0.86991 0.79760 0.84573 0.77169 1.21525 1.19813 1.22888 1.18927 0.83870 0.94751 1.41774 0.89395 1.44280 1.07880 1.35267 1.45079 1.20888 0.92275 0.91572 0.93188 1.22362 1.00005 0.97571 0.98741 1.20990 0.87931 0.91542 0.93675 0.89163 1.45962 1.10243 1.23670 1.54448 1.16462 0.81068 0.84518 0.79440 1.90879 1.78759 1.20350 1.49839 1.22510 0.97212 0.85898 1.03292 1.21994 0.92615 1.00971 0.99558 1.21694 1.00916 0.93476 1.01624 1.22830 0.86607 0.99447 1.04674 1.19099 0.90582 0.85635 0.74146 1.93073 1.64257 1.75668 1.83435 1.93081 1.93668 1.94679 1.34925 1.84002 1.34610 1.31375 1.53961 1.22756 0.93545 0.91169 0.90970 0.90509 1.86436 1.39449 1.49384 1.62338 1.22087 0.97657 0.92997 0.90379 0.92550 0.91237 0.95856 0.91023 0.90219 0.75623 0.81337 0.81884 0.84705 0.77411 0.95510 0.90001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.43 13.97 55.49 0.78 -25.66 16 2 C 0.03 0.72 5.24 -17.43 -0.09 0.63 16 3 Si 0.88 20.96 24.35 -169.99 -4.14 16.82 16 4 H -0.29 -6.39 6.40 56.52 0.36 -6.03 16 5 H -0.27 -6.37 6.93 56.52 0.39 -5.98 16 6 H -0.30 -7.36 7.11 56.52 0.40 -6.96 16 7 C -0.27 -6.94 10.03 -15.06 -0.15 -7.09 16 8 H 0.09 2.48 8.06 -52.49 -0.42 2.06 16 9 N -0.60 -13.05 2.75 -172.58 -0.47 -13.52 16 10 C 0.15 2.70 6.23 -3.93 -0.02 2.68 16 11 C -0.15 -2.33 5.75 -26.83 -0.15 -2.48 16 12 C 0.16 2.58 2.47 -67.89 -0.17 2.41 16 13 H 0.09 1.45 7.58 -51.93 -0.39 1.06 16 14 N -0.69 -10.68 4.15 -55.08 -0.23 -10.91 16 15 C 0.60 9.22 7.75 -12.86 -0.10 9.12 16 16 O -0.52 -8.99 16.53 5.20 0.09 -8.90 16 17 C -0.04 -0.48 7.13 -36.80 -0.26 -0.75 16 18 C -0.13 -1.50 10.62 -39.39 -0.42 -1.92 16 19 C -0.16 -1.60 10.77 -39.89 -0.43 -2.03 16 20 C -0.08 -0.89 6.75 -35.42 -0.24 -1.13 16 21 C 0.36 3.07 5.76 36.00 0.21 3.28 16 22 F -0.18 -1.71 17.32 2.25 0.04 -1.67 16 23 F -0.18 -1.75 17.32 2.25 0.04 -1.71 16 24 O -0.14 -1.83 10.40 4.98 0.05 -1.78 16 25 C 0.08 1.26 3.36 -26.61 -0.09 1.17 16 26 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 27 O -0.57 -8.56 13.21 -35.23 -0.47 -9.03 16 28 C 0.10 1.86 3.54 -3.71 -0.01 1.85 16 29 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 30 H 0.07 1.29 7.93 -51.93 -0.41 0.88 16 31 H 0.02 0.43 7.74 -51.93 -0.40 0.03 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.41 6.29 6.62 -40.82 -0.27 6.02 16 35 H 0.17 1.68 8.06 -52.49 -0.42 1.25 16 36 H 0.16 1.24 8.06 -52.48 -0.42 0.82 16 37 H 0.14 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.38 4.39 9.08 45.56 0.41 4.81 16 39 H 0.03 0.53 5.70 -51.93 -0.30 0.23 16 40 H 0.08 1.74 4.51 -51.93 -0.23 1.51 16 LS Contribution 340.07 15.07 5.12 5.12 Total: -1.00 -31.24 340.07 -4.86 -36.10 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -3.74 Total: 9.41 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: -1.93 Total: 5.73 kcal Atomic # 7 Polarization: -50.16 SS G_CDS: 0.07 Total: -50.09 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.33 Total: -19.71 kcal Atomic # 9 Polarization: -3.47 SS G_CDS: 0.08 Total: -3.39 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.14 Total: 16.82 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.24 -4.86 -36.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090772051.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.126 kcal (2) G-P(sol) polarization free energy of solvation -31.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds