Wall clock time and date at job start Tue Mar 31 2020 06:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99894 * 2 1 4 4 H 1.48504 * 109.47115 * 269.99738 * 3 2 1 5 5 H 1.48500 * 109.47480 * 29.99939 * 3 2 1 6 6 H 1.48499 * 109.47007 * 149.99970 * 3 2 1 7 7 C 1.38815 * 119.99984 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99853 * 163.17555 * 7 2 1 9 9 N 1.36933 * 119.99826 * 343.17890 * 7 2 1 10 10 C 1.46930 * 120.63377 * 331.58795 * 9 7 2 11 11 C 1.53184 * 108.77429 * 233.88504 * 10 9 7 12 12 C 1.53044 * 109.31425 * 305.36060 * 11 10 9 13 13 H 1.09000 * 109.46003 * 301.34855 * 12 11 10 14 14 N 1.46505 * 109.44555 * 181.37996 * 12 11 10 15 15 C 1.34774 * 119.99862 * 84.94588 * 14 12 11 16 16 O 1.21697 * 119.99816 * 359.97438 * 15 14 12 17 17 C 1.46653 * 119.99892 * 179.97438 * 15 14 12 18 18 C 1.36549 * 125.98795 * 179.71147 * 17 15 14 19 19 C 1.40363 * 106.70917 * 179.85589 * 18 17 15 20 20 C 1.35134 * 107.11506 * 0.40795 * 19 18 17 21 21 C 1.50701 * 125.62028 * 179.77919 * 20 19 18 22 22 F 1.39892 * 109.47166 * 209.98984 * 21 20 19 23 23 F 1.39904 * 109.46633 * 329.98714 * 21 20 19 24 24 O 1.33936 * 108.76549 * 359.75143 * 20 19 18 25 25 C 1.53041 * 109.53595 * 61.36792 * 12 11 10 26 26 H 1.08994 * 109.49752 * 178.68260 * 25 12 11 27 27 O 1.42906 * 109.49526 * 58.58663 * 25 12 11 28 28 C 1.46930 * 120.63005 * 151.86766 * 9 7 2 29 29 H 0.97002 * 120.00123 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.58347 * 353.67401 * 10 9 7 31 31 H 1.08998 * 109.58237 * 114.09465 * 10 9 7 32 32 H 1.09006 * 109.49497 * 185.40962 * 11 10 9 33 33 H 1.08998 * 109.52610 * 65.33234 * 11 10 9 34 34 H 0.96996 * 119.99992 * 264.93613 * 14 12 11 35 35 H 1.08001 * 126.64304 * 359.96894 * 18 17 15 36 36 H 1.07997 * 126.44631 * 180.15544 * 19 18 17 37 37 H 1.08999 * 109.46987 * 89.98527 * 21 20 19 38 38 H 0.96698 * 113.99718 * 180.16616 * 27 25 12 39 39 H 1.09001 * 109.58909 * 245.90761 * 28 9 7 40 40 H 1.09005 * 109.58334 * 6.33098 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0556 -1.2223 -0.2702 9 7 1.3695 -2.3625 0.3442 10 6 0.2276 -2.3416 1.2685 11 6 0.5037 -3.3189 2.4154 12 6 0.8197 -4.7006 1.8381 13 1 -0.0211 -5.0432 1.2351 14 7 1.0520 -5.6454 2.9335 15 6 0.0098 -6.2690 3.5178 16 8 -1.1241 -6.0469 3.1358 17 6 0.2423 -7.2152 4.6138 18 6 -0.7185 -7.9075 5.2936 19 6 -0.0519 -8.6916 6.2480 20 6 1.2693 -8.4398 6.1169 21 6 2.3670 -9.0590 6.9431 22 9 3.4339 -8.1605 7.0496 23 9 1.8784 -9.3563 8.2199 24 8 1.4425 -7.5496 5.1313 25 6 2.0730 -4.6154 0.9638 26 1 2.3110 -5.6042 0.5719 27 8 3.1684 -4.1353 1.7460 28 6 1.8147 -3.6528 -0.1995 29 1 -0.4850 0.8401 -0.0004 30 1 0.0995 -1.3357 1.6684 31 1 -0.6761 -2.6447 0.7397 32 1 -0.3754 -3.3849 3.0567 33 1 1.3537 -2.9652 2.9988 34 1 1.9557 -5.8221 3.2380 35 1 -1.7848 -7.8620 5.1276 36 1 -0.5091 -9.3659 6.9569 37 1 2.7102 -9.9754 6.4629 38 1 3.9969 -4.0538 1.2541 39 1 1.0405 -4.0628 -0.8481 40 1 2.7339 -3.5121 -0.7683 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090772052.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:28 Heat of formation + Delta-G solvation = -139.697625 kcal Electronic energy + Delta-G solvation = -28398.668004 eV Core-core repulsion = 23851.975865 eV Total energy + Delta-G solvation = -4546.692139 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.122 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.57533 -47.59797 -43.11209 -39.77991 -38.02739 -34.95821 -34.57816 -33.55526 -32.05744 -31.42876 -30.00101 -28.86466 -26.96194 -25.09561 -23.06365 -22.32692 -22.12441 -21.58544 -20.35177 -19.65153 -18.72555 -18.24161 -17.64274 -17.53976 -17.10628 -16.52537 -16.23584 -15.76966 -14.89591 -14.62291 -14.57787 -14.46063 -14.19494 -14.16737 -13.93595 -13.77915 -13.51747 -13.39549 -13.24910 -13.18701 -12.86072 -12.13396 -12.09496 -11.97488 -11.28841 -11.07891 -10.85939 -10.76942 -10.48861 -10.38556 -10.31925 -10.22096 -10.04752 -9.70504 -9.39564 -9.20017 -8.79206 -8.43971 -6.69172 -5.80478 -3.23264 0.58721 1.79416 1.91027 2.99152 3.07856 3.32418 3.37138 3.44519 3.46819 3.60283 4.16011 4.26701 4.45138 4.45922 4.60193 4.72232 5.15272 5.16920 5.25061 5.31119 5.38107 5.42240 5.55001 5.70185 5.86907 5.87660 6.13841 6.25115 6.34539 6.42985 6.54301 6.57666 6.76726 6.82912 7.36204 7.51222 7.65417 7.77077 8.03931 8.09714 8.42600 9.17771 9.80468 10.36583 11.28164 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.021658 B = 0.002636 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.492948 B =10617.624949 C =11079.382085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.003 3.997 3 Si 0.903 3.097 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.251 4.251 8 H 0.064 0.936 9 N -0.582 5.582 10 C 0.174 3.826 11 C -0.145 4.145 12 C 0.160 3.840 13 H 0.095 0.905 14 N -0.702 5.702 15 C 0.594 3.406 16 O -0.514 6.514 17 C -0.039 4.039 18 C -0.132 4.132 19 C -0.165 4.165 20 C -0.084 4.084 21 C 0.363 3.637 22 F -0.188 7.188 23 F -0.183 7.183 24 O -0.141 6.141 25 C 0.081 3.919 26 H 0.047 0.953 27 O -0.555 6.555 28 C 0.119 3.881 29 H 0.254 0.746 30 H 0.091 0.909 31 H 0.021 0.979 32 H 0.053 0.947 33 H 0.068 0.932 34 H 0.407 0.593 35 H 0.169 0.831 36 H 0.165 0.835 37 H 0.142 0.858 38 H 0.374 0.626 39 H 0.028 0.972 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.010 -20.926 11.252 24.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.381 4.381 8 H 0.082 0.918 9 N -0.304 5.304 10 C 0.048 3.952 11 C -0.185 4.185 12 C 0.057 3.943 13 H 0.113 0.887 14 N -0.352 5.352 15 C 0.378 3.622 16 O -0.392 6.392 17 C -0.093 4.093 18 C -0.152 4.152 19 C -0.184 4.184 20 C -0.137 4.137 21 C 0.310 3.690 22 F -0.169 7.169 23 F -0.164 7.164 24 O -0.037 6.037 25 C 0.020 3.980 26 H 0.065 0.935 27 O -0.360 6.360 28 C -0.009 4.009 29 H 0.065 0.935 30 H 0.110 0.890 31 H 0.039 0.961 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.242 0.758 35 H 0.187 0.813 36 H 0.183 0.817 37 H 0.159 0.841 38 H 0.220 0.780 39 H 0.046 0.954 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.939 -20.427 11.331 23.544 hybrid contribution 1.086 0.741 -0.057 1.316 sum 4.025 -19.686 11.275 23.040 Atomic orbital electron populations 1.70026 1.05279 1.25621 1.53623 1.25051 0.95290 0.98467 1.00789 0.86297 0.79194 0.83620 0.77624 1.21443 1.21556 1.20466 1.19095 0.92363 0.84699 1.41897 0.91821 1.43900 1.35819 1.01058 1.49603 1.20782 0.88484 0.98332 0.87598 1.22529 1.00907 0.94311 1.00793 1.21182 0.96858 0.89569 0.86729 0.88686 1.46190 1.09384 1.43220 1.36374 1.16561 0.85693 0.79464 0.80439 1.90919 1.21789 1.63945 1.62546 1.22629 0.82537 1.03326 1.00762 1.22018 1.01240 0.96524 0.95419 1.21626 0.91576 1.03335 1.01890 1.23076 0.96771 0.98244 0.95590 1.19572 0.78831 0.91333 0.79298 1.93080 1.56959 1.70569 1.96269 1.93068 1.88519 1.93551 1.41289 1.84039 1.32273 1.47436 1.39916 1.22633 0.86581 0.95946 0.92862 0.93533 1.86452 1.20352 1.89297 1.39862 1.21541 0.98795 0.88019 0.92536 0.93548 0.89049 0.96099 0.92878 0.91353 0.75792 0.81321 0.81706 0.84131 0.77968 0.95396 0.91894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.11 11.20 55.49 0.62 -25.49 16 2 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 3 Si 0.90 21.60 29.59 -169.99 -5.03 16.57 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.25 -6.73 9.58 -15.06 -0.14 -6.87 16 8 H 0.06 1.66 7.88 -52.49 -0.41 1.25 16 9 N -0.58 -14.15 2.93 -172.32 -0.51 -14.65 16 10 C 0.17 4.21 5.31 -3.71 -0.02 4.19 16 11 C -0.15 -2.96 5.51 -26.61 -0.15 -3.11 16 12 C 0.16 2.79 2.20 -67.88 -0.15 2.64 16 13 H 0.10 1.75 7.58 -51.93 -0.39 1.36 16 14 N -0.70 -10.64 5.05 -55.08 -0.28 -10.92 16 15 C 0.59 9.24 7.75 -12.87 -0.10 9.14 16 16 O -0.51 -9.49 16.53 5.19 0.09 -9.40 16 17 C -0.04 -0.51 7.13 -36.80 -0.26 -0.77 16 18 C -0.13 -1.44 10.62 -39.39 -0.42 -1.86 16 19 C -0.16 -1.45 10.42 -39.89 -0.42 -1.87 16 20 C -0.08 -0.79 6.93 -35.41 -0.25 -1.03 16 21 C 0.36 2.48 5.82 36.01 0.21 2.69 16 22 F -0.19 -1.78 17.30 2.25 0.04 -1.74 16 23 F -0.18 -1.40 17.02 2.25 0.04 -1.36 16 24 O -0.14 -1.67 10.38 4.98 0.05 -1.62 16 25 C 0.08 1.32 3.38 -26.61 -0.09 1.23 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 O -0.55 -8.94 12.09 -35.23 -0.43 -9.37 16 28 C 0.12 2.32 6.16 -3.71 -0.02 2.29 16 29 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 30 H 0.09 2.49 6.06 -51.93 -0.31 2.17 16 31 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.07 1.47 7.61 -51.93 -0.40 1.08 16 34 H 0.41 5.60 8.01 -40.82 -0.33 5.27 16 35 H 0.17 1.66 8.06 -52.49 -0.42 1.24 16 36 H 0.17 0.98 8.06 -52.49 -0.42 0.56 16 37 H 0.14 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.37 4.73 9.08 45.56 0.41 5.15 16 39 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 LS Contribution 348.43 15.07 5.25 5.25 Total: -1.00 -32.66 348.43 -5.98 -38.64 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -3.94 Total: 7.45 kcal Atomic # 6 Polarization: 8.54 SS G_CDS: -1.89 Total: 6.65 kcal Atomic # 7 Polarization: -50.90 SS G_CDS: -0.16 Total: -51.06 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: -0.29 Total: -20.39 kcal Atomic # 9 Polarization: -3.18 SS G_CDS: 0.08 Total: -3.10 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.66 -5.98 -38.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090772052.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.056 kcal (2) G-P(sol) polarization free energy of solvation -32.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds