Wall clock time and date at job start Tue Mar 31 2020 06:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 119.99816 * 2 1 4 4 H 1.48505 * 109.46913 * 239.99961 * 3 2 1 5 5 H 1.48505 * 109.47013 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47250 * 119.99650 * 3 2 1 7 7 C 1.38815 * 120.00309 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99892 * 197.36250 * 7 2 1 9 9 N 1.36934 * 119.99651 * 17.36111 * 7 2 1 10 10 C 1.46924 * 120.63123 * 207.66171 * 9 7 2 11 11 C 1.53191 * 108.77864 * 233.63417 * 10 9 7 12 12 C 1.53035 * 109.31443 * 305.36640 * 11 10 9 13 13 H 1.08999 * 109.44879 * 301.35369 * 12 11 10 14 14 N 1.46502 * 109.46306 * 181.38425 * 12 11 10 15 15 C 1.34773 * 119.99820 * 84.92697 * 14 12 11 16 16 O 1.21700 * 120.00330 * 0.02562 * 15 14 12 17 17 C 1.46657 * 119.99717 * 180.02562 * 15 14 12 18 18 C 1.36549 * 125.98318 * 179.97438 * 17 15 14 19 19 C 1.40367 * 106.70392 * 180.02562 * 18 17 15 20 20 C 1.35129 * 107.11461 * 359.97438 * 19 18 17 21 21 C 1.50704 * 125.61470 * 180.26465 * 20 19 18 22 22 F 1.39899 * 109.47122 * 209.72003 * 21 20 19 23 23 F 1.39911 * 109.46847 * 329.71761 * 21 20 19 24 24 O 1.33925 * 108.76828 * 0.02562 * 20 19 18 25 25 C 1.53043 * 109.53845 * 61.36370 * 12 11 10 26 26 H 1.09001 * 109.49629 * 58.61799 * 25 12 11 27 27 O 1.42901 * 109.49849 * 178.68266 * 25 12 11 28 28 C 1.46931 * 120.63055 * 27.69385 * 9 7 2 29 29 H 0.96996 * 120.00327 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.58738 * 353.42592 * 10 9 7 31 31 H 1.09006 * 109.58235 * 113.84545 * 10 9 7 32 32 H 1.08999 * 109.49764 * 185.41404 * 11 10 9 33 33 H 1.09005 * 109.49387 * 65.32029 * 11 10 9 34 34 H 0.96994 * 119.99958 * 264.93762 * 14 12 11 35 35 H 1.07998 * 126.65264 * 0.02562 * 18 17 15 36 36 H 1.08001 * 126.44060 * 180.02562 * 19 18 17 37 37 H 1.08998 * 109.47409 * 89.71454 * 21 20 19 38 38 H 0.96700 * 113.99604 * 179.97438 * 27 25 12 39 39 H 1.08996 * 109.58598 * 6.57839 * 28 9 7 40 40 H 1.08995 * 109.69895 * 246.22239 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0534 -1.2232 0.2797 9 7 1.3724 -2.3612 -0.3528 10 6 1.8197 -3.6546 0.1815 11 6 2.0753 -4.6098 -0.9886 12 6 0.8200 -4.6900 -1.8601 13 1 -0.0191 -5.0367 -1.2569 14 7 1.0496 -5.6280 -2.9617 15 6 0.8498 -6.9478 -2.7757 16 8 0.4781 -7.3603 -1.6928 17 6 1.0802 -7.8869 -3.8784 18 6 0.9173 -9.2416 -3.8258 19 6 1.2473 -9.7373 -5.0969 20 6 1.5922 -8.6768 -5.8600 21 6 2.0159 -8.7363 -7.3051 22 9 2.8992 -7.6857 -7.5756 23 9 2.6527 -9.9569 -7.5544 24 8 1.4905 -7.5637 -5.1223 25 6 0.5017 -3.3049 -2.4279 26 1 1.3501 -2.9471 -3.0111 27 8 -0.6528 -3.3867 -3.2661 28 6 0.2281 -2.3350 -1.2741 29 1 -0.4850 0.8400 -0.0004 30 1 2.7402 -3.5171 0.7488 31 1 1.0472 -4.0691 0.8295 32 1 2.3148 -5.6009 -0.6035 33 1 2.9093 -4.2394 -1.5849 34 1 1.3457 -5.2992 -3.8249 35 1 0.5967 -9.8197 -2.9717 36 1 1.2283 -10.7717 -5.4068 37 1 1.1382 -8.6470 -7.9451 38 1 -0.9129 -2.5431 -3.6606 39 1 0.0986 -1.3267 -1.6673 40 1 -0.6754 -2.6403 -0.7465 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090772057.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:32 Heat of formation + Delta-G solvation = -143.036238 kcal Electronic energy + Delta-G solvation = -28297.467582 eV Core-core repulsion = 23750.630670 eV Total energy + Delta-G solvation = -4546.836913 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.122 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.57628 -47.59925 -43.11015 -39.76709 -37.93091 -35.31981 -34.60931 -33.57031 -32.33372 -31.47935 -29.60038 -28.92901 -26.97740 -25.15246 -23.14164 -22.31877 -22.11013 -21.58358 -20.39247 -19.69592 -18.73779 -18.23963 -17.66606 -17.55097 -16.87039 -16.65811 -16.51654 -16.05702 -14.97215 -14.73805 -14.54100 -14.45164 -14.18232 -13.94771 -13.87893 -13.68704 -13.54072 -13.39198 -13.31653 -13.21479 -12.71481 -12.27717 -12.06848 -11.98306 -11.73646 -11.26889 -10.86660 -10.83853 -10.49619 -10.47829 -10.37515 -10.26409 -10.03886 -9.65234 -9.43180 -9.21877 -8.86899 -8.57255 -6.82669 -5.90368 -3.33908 0.59507 1.80250 1.90951 3.00949 3.07602 3.31641 3.33244 3.38474 3.39332 3.60519 4.16246 4.26813 4.38056 4.45346 4.51321 4.69333 5.15831 5.22583 5.26019 5.32032 5.37842 5.43136 5.52082 5.85197 5.87101 5.92894 6.02863 6.09505 6.31504 6.34512 6.39865 6.64639 6.69810 6.85615 7.06934 7.39692 7.50949 7.69284 8.03101 8.08913 8.32459 9.07698 9.70444 10.26283 11.18174 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.021257 B = 0.002616 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.895205 B =10700.549195 C =11253.498688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.905 3.095 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.258 4.258 8 H 0.069 0.931 9 N -0.589 5.589 10 C 0.145 3.855 11 C -0.141 4.141 12 C 0.160 3.840 13 H 0.093 0.907 14 N -0.698 5.698 15 C 0.597 3.403 16 O -0.516 6.516 17 C -0.038 4.038 18 C -0.132 4.132 19 C -0.165 4.165 20 C -0.084 4.084 21 C 0.363 3.637 22 F -0.188 7.188 23 F -0.183 7.183 24 O -0.141 6.141 25 C 0.072 3.928 26 H 0.054 0.946 27 O -0.573 6.573 28 C 0.149 3.851 29 H 0.256 0.744 30 H 0.062 0.938 31 H 0.025 0.975 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.403 0.597 35 H 0.169 0.831 36 H 0.165 0.835 37 H 0.142 0.858 38 H 0.377 0.623 39 H 0.095 0.905 40 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.628 -17.055 -14.858 22.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.196 4.196 3 Si 0.734 3.266 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.387 4.387 8 H 0.087 0.913 9 N -0.313 5.313 10 C 0.018 3.982 11 C -0.181 4.181 12 C 0.057 3.943 13 H 0.111 0.889 14 N -0.347 5.347 15 C 0.381 3.619 16 O -0.394 6.394 17 C -0.091 4.091 18 C -0.153 4.153 19 C -0.184 4.184 20 C -0.137 4.137 21 C 0.310 3.690 22 F -0.169 7.169 23 F -0.164 7.164 24 O -0.037 6.037 25 C 0.011 3.989 26 H 0.071 0.929 27 O -0.378 6.378 28 C 0.021 3.979 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.043 0.957 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.238 0.762 35 H 0.187 0.813 36 H 0.183 0.817 37 H 0.159 0.841 38 H 0.224 0.776 39 H 0.113 0.887 40 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 1.378 -17.480 -13.986 22.428 hybrid contribution 0.634 1.397 -0.577 1.640 sum 2.012 -16.082 -14.563 21.789 Atomic orbital electron populations 1.70012 1.05273 1.25880 1.53427 1.25077 0.95323 0.98577 1.00580 0.86338 0.78921 0.83087 0.78244 1.20961 1.21568 1.20741 1.19168 0.92875 0.84626 1.42024 0.91343 1.44007 1.35636 1.01814 1.49820 1.20940 0.98379 0.86254 0.92580 1.22451 0.96501 1.00484 0.98701 1.21150 0.99043 0.87019 0.87087 0.88943 1.46088 1.66639 1.05673 1.16273 1.16518 0.78496 0.81788 0.85063 1.90905 1.47251 1.77629 1.23629 1.22624 1.07103 0.95700 0.83715 1.22010 1.01772 0.92624 0.98854 1.21622 1.03637 0.99991 0.93178 1.23061 1.09472 0.85938 0.95194 1.19584 0.88737 0.71944 0.88774 1.93077 1.71863 1.57420 1.94571 1.93068 1.84322 1.44665 1.94387 1.84031 1.65829 1.33214 1.20597 1.22991 0.87231 0.95120 0.93571 0.92853 1.86406 1.48268 1.36745 1.66391 1.21419 0.89857 0.98255 0.88330 0.93383 0.91937 0.95693 0.91638 0.91786 0.76231 0.81344 0.81712 0.84085 0.77572 0.88686 0.95111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.18 11.19 55.49 0.62 -24.56 16 2 C 0.00 0.09 4.91 -17.43 -0.09 0.00 16 3 Si 0.90 20.91 29.59 -169.99 -5.03 15.88 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.26 -6.79 9.59 -15.06 -0.14 -6.93 16 8 H 0.07 1.77 7.89 -52.49 -0.41 1.35 16 9 N -0.59 -14.16 2.99 -172.32 -0.52 -14.67 16 10 C 0.15 2.99 6.52 -3.71 -0.02 2.97 16 11 C -0.14 -2.49 5.65 -26.61 -0.15 -2.64 16 12 C 0.16 2.84 2.12 -67.89 -0.14 2.70 16 13 H 0.09 1.85 7.58 -51.93 -0.39 1.46 16 14 N -0.70 -10.71 4.91 -55.08 -0.27 -10.98 16 15 C 0.60 9.36 7.75 -12.86 -0.10 9.26 16 16 O -0.52 -9.52 16.53 5.19 0.09 -9.43 16 17 C -0.04 -0.50 7.13 -36.80 -0.26 -0.76 16 18 C -0.13 -1.45 10.62 -39.39 -0.42 -1.87 16 19 C -0.16 -1.46 10.43 -39.89 -0.42 -1.87 16 20 C -0.08 -0.79 6.92 -35.41 -0.25 -1.04 16 21 C 0.36 2.50 5.82 36.01 0.21 2.70 16 22 F -0.19 -1.77 17.31 2.25 0.04 -1.73 16 23 F -0.18 -1.39 17.02 2.25 0.04 -1.35 16 24 O -0.14 -1.69 10.38 5.03 0.05 -1.63 16 25 C 0.07 1.31 3.14 -26.61 -0.08 1.23 16 26 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 27 O -0.57 -9.58 13.16 -35.23 -0.46 -10.05 16 28 C 0.15 3.36 4.94 -3.71 -0.02 3.34 16 29 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.06 1.24 7.93 -51.93 -0.41 0.83 16 31 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.40 5.51 8.36 -40.82 -0.34 5.17 16 35 H 0.17 1.65 8.06 -52.49 -0.42 1.23 16 36 H 0.17 0.98 8.06 -52.49 -0.42 0.56 16 37 H 0.14 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.38 5.02 9.08 45.56 0.41 5.43 16 39 H 0.10 2.35 6.03 -51.93 -0.31 2.03 16 40 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 350.08 15.07 5.28 5.28 Total: -1.00 -31.64 350.08 -6.03 -37.67 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -3.98 Total: 8.50 kcal Atomic # 6 Polarization: 8.97 SS G_CDS: -1.88 Total: 7.09 kcal Atomic # 7 Polarization: -50.05 SS G_CDS: -0.17 Total: -50.22 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -0.33 Total: -21.11 kcal Atomic # 9 Polarization: -3.16 SS G_CDS: 0.08 Total: -3.08 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.03 Total: 15.88 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.64 -6.03 -37.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090772057.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.370 kcal (2) G-P(sol) polarization free energy of solvation -31.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds