Wall clock time and date at job start Tue Mar 31 2020 06:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86790 * 120.00367 * 2 1 4 4 H 1.48506 * 109.47143 * 239.99892 * 3 2 1 5 5 H 1.48502 * 109.47082 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47418 * 119.99682 * 3 2 1 7 7 C 1.38814 * 119.99462 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99955 * 163.08122 * 7 2 1 9 9 N 1.36941 * 120.00230 * 343.08065 * 7 2 1 10 10 C 1.46923 * 120.63246 * 151.82328 * 9 7 2 11 11 C 1.53191 * 108.76407 * 126.40420 * 10 9 7 12 12 C 1.53040 * 109.31261 * 54.66058 * 11 10 9 13 13 H 1.08997 * 109.45689 * 58.62510 * 12 11 10 14 14 N 1.46504 * 109.45756 * 178.59957 * 12 11 10 15 15 C 1.34772 * 119.99924 * 275.02252 * 14 12 11 16 16 O 1.21699 * 119.99916 * 0.02562 * 15 14 12 17 17 C 1.46658 * 120.00214 * 180.27736 * 15 14 12 18 18 C 1.36544 * 125.98764 * 179.43721 * 17 15 14 19 19 C 1.40363 * 106.70252 * 179.85204 * 18 17 15 20 20 C 1.35135 * 107.11895 * 0.41537 * 19 18 17 21 21 C 1.50702 * 125.61579 * 179.70759 * 20 19 18 22 22 F 1.39896 * 109.47194 * 300.01285 * 21 20 19 23 23 F 1.39896 * 109.47211 * 60.01866 * 21 20 19 24 24 O 1.33931 * 108.76396 * 359.74306 * 20 19 18 25 25 C 1.53040 * 109.52465 * 298.61058 * 12 11 10 26 26 H 1.09003 * 109.49658 * 301.42717 * 25 12 11 27 27 O 1.42894 * 109.49958 * 181.32634 * 25 12 11 28 28 C 1.46926 * 120.62843 * 331.84584 * 9 7 2 29 29 H 0.97003 * 119.99867 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.58982 * 246.20161 * 10 9 7 31 31 H 1.09005 * 109.58314 * 6.48260 * 10 9 7 32 32 H 1.09003 * 109.51350 * 294.69411 * 11 10 9 33 33 H 1.09000 * 109.48344 * 174.60248 * 11 10 9 34 34 H 0.96995 * 119.99717 * 95.02450 * 14 12 11 35 35 H 1.07998 * 126.64650 * 359.97438 * 18 17 15 36 36 H 1.08004 * 126.44252 * 180.17535 * 19 18 17 37 37 H 1.09005 * 109.46679 * 180.02562 * 21 20 19 38 38 H 0.96698 * 114.00275 * 180.02562 * 27 25 12 39 39 H 1.09001 * 109.58449 * 113.79980 * 28 9 7 40 40 H 1.08996 * 109.70612 * 353.44320 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0551 -1.2227 -0.2717 9 7 1.3698 -2.3623 0.3462 10 6 1.8135 -3.6530 -0.1978 11 6 2.0670 -4.6171 0.9653 12 6 0.8114 -4.7007 1.8363 13 1 -0.0286 -5.0408 1.2306 14 7 1.0389 -5.6475 2.9309 15 6 0.8349 -6.9653 2.7354 16 8 0.4621 -7.3687 1.6494 17 6 1.0567 -7.9125 3.8328 18 6 0.8782 -9.2649 3.7739 19 6 1.2077 -9.7709 5.0410 20 6 1.5595 -8.7175 5.8108 21 6 1.9848 -8.7890 7.2548 22 9 0.9512 -9.3416 8.0186 23 9 3.1263 -9.5902 7.3657 24 8 1.4673 -7.5994 5.0793 25 6 0.4969 -3.3190 2.4143 26 1 1.3467 -2.9675 2.9996 27 8 -0.6576 -3.4040 3.2521 28 6 0.2258 -2.3399 1.2678 29 1 -0.4850 0.8401 -0.0004 30 1 1.0400 -4.0606 -0.8486 31 1 2.7330 -3.5132 -0.7664 32 1 2.9019 -4.2533 1.5644 33 1 2.3041 -5.6059 0.5729 34 1 1.3363 -5.3259 3.7963 35 1 0.5492 -9.8349 2.9176 36 1 1.1810 -10.8070 5.3448 37 1 2.2083 -7.7857 7.6178 38 1 -0.9154 -2.5626 3.6530 39 1 -0.6773 -2.6404 0.7365 40 1 0.0964 -1.3346 1.6687 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090772059.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:35 Heat of formation + Delta-G solvation = -142.750774 kcal Electronic energy + Delta-G solvation = -28208.383445 eV Core-core repulsion = 23661.558911 eV Total energy + Delta-G solvation = -4546.824534 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.122 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.59245 -47.59549 -43.13784 -39.79416 -37.95300 -35.33772 -34.63216 -33.57116 -32.35876 -31.48444 -29.61373 -28.94611 -26.99903 -25.18112 -23.21126 -22.35960 -22.08076 -21.62074 -20.43538 -19.71808 -18.75389 -17.95840 -17.84797 -17.59576 -16.89302 -16.67843 -16.55186 -16.07783 -14.99652 -14.74098 -14.59172 -14.41916 -14.09720 -13.94415 -13.90363 -13.71959 -13.58559 -13.46936 -13.39853 -13.30654 -12.73167 -12.29722 -12.08883 -11.81370 -11.75444 -11.28369 -10.88272 -10.85443 -10.51414 -10.49645 -10.40285 -10.28002 -10.05894 -9.67081 -9.45030 -9.27562 -8.90235 -8.58980 -6.83416 -5.91787 -3.36004 0.56071 1.80991 1.81786 2.98223 3.05757 3.30866 3.37284 3.37851 3.41391 3.66314 4.06161 4.36312 4.37807 4.43853 4.48621 4.66360 5.15540 5.21224 5.24649 5.30219 5.36100 5.41109 5.49760 5.82974 5.86067 5.90876 6.00759 6.07097 6.28179 6.32425 6.37533 6.62828 6.67529 6.84143 7.05209 7.37786 7.48203 7.67856 8.00992 8.06420 8.31253 9.06308 9.68850 10.24926 11.16741 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.022403 B = 0.002514 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.552357 B =11135.104273 C =11524.360761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.004 3.996 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.258 4.258 8 H 0.069 0.931 9 N -0.589 5.589 10 C 0.145 3.855 11 C -0.141 4.141 12 C 0.160 3.840 13 H 0.093 0.907 14 N -0.699 5.699 15 C 0.597 3.403 16 O -0.515 6.515 17 C -0.034 4.034 18 C -0.133 4.133 19 C -0.156 4.156 20 C -0.087 4.087 21 C 0.361 3.639 22 F -0.183 7.183 23 F -0.183 7.183 24 O -0.146 6.146 25 C 0.072 3.928 26 H 0.053 0.947 27 O -0.573 6.573 28 C 0.149 3.851 29 H 0.256 0.744 30 H 0.025 0.975 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.403 0.597 35 H 0.169 0.831 36 H 0.163 0.837 37 H 0.135 0.865 38 H 0.377 0.623 39 H 0.031 0.969 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.153 -15.824 14.233 21.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.195 4.195 3 Si 0.734 3.266 4 H -0.207 1.207 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.388 4.388 8 H 0.086 0.914 9 N -0.313 5.313 10 C 0.018 3.982 11 C -0.181 4.181 12 C 0.057 3.943 13 H 0.111 0.889 14 N -0.347 5.347 15 C 0.381 3.619 16 O -0.393 6.393 17 C -0.087 4.087 18 C -0.153 4.153 19 C -0.176 4.176 20 C -0.140 4.140 21 C 0.307 3.693 22 F -0.164 7.164 23 F -0.164 7.164 24 O -0.041 6.041 25 C 0.011 3.989 26 H 0.071 0.929 27 O -0.378 6.378 28 C 0.022 3.978 29 H 0.066 0.934 30 H 0.043 0.957 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.237 0.763 35 H 0.187 0.813 36 H 0.181 0.819 37 H 0.152 0.848 38 H 0.224 0.776 39 H 0.049 0.951 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.863 -16.277 13.368 21.257 hybrid contribution 0.472 1.284 0.606 1.496 sum 3.334 -14.992 13.974 20.764 Atomic orbital electron populations 1.70013 1.05278 1.25893 1.53380 1.25095 0.95333 0.98597 1.00500 0.86334 0.78912 0.83070 0.78239 1.20736 1.21561 1.20958 1.19164 0.92703 0.84567 1.42330 0.91367 1.44003 1.35662 1.01960 1.49646 1.20940 0.98429 0.86253 0.92556 1.22446 0.96464 1.00477 0.98704 1.21157 0.99089 0.86831 0.87236 0.88926 1.46079 1.66655 1.05656 1.16294 1.16515 0.78521 0.81755 0.85079 1.90910 1.47102 1.77949 1.23294 1.22597 1.06728 0.95787 0.83585 1.22025 1.01717 0.92621 0.98962 1.21709 1.02334 1.00263 0.93260 1.22815 1.10253 0.85596 0.95296 1.19074 0.73712 0.93122 0.83404 1.93078 1.59513 1.88027 1.75797 1.93077 1.50240 1.76930 1.96187 1.83969 1.66125 1.33229 1.20791 1.22990 0.87223 0.95145 0.93552 0.92868 1.86408 1.48272 1.36957 1.66168 1.21414 0.89893 0.98087 0.88436 0.93370 0.95708 0.91928 0.91798 0.91633 0.76294 0.81318 0.81908 0.84782 0.77560 0.95112 0.88731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.02 11.19 55.49 0.62 -24.40 16 2 C 0.00 0.10 4.92 -17.43 -0.09 0.01 16 3 Si 0.91 20.74 29.59 -169.99 -5.03 15.71 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.26 -6.74 9.58 -15.06 -0.14 -6.89 16 8 H 0.07 1.74 7.89 -52.48 -0.41 1.33 16 9 N -0.59 -14.00 2.99 -172.32 -0.52 -14.51 16 10 C 0.15 2.95 6.52 -3.71 -0.02 2.92 16 11 C -0.14 -2.43 5.65 -26.61 -0.15 -2.58 16 12 C 0.16 2.78 2.12 -67.89 -0.14 2.63 16 13 H 0.09 1.83 7.58 -51.93 -0.39 1.44 16 14 N -0.70 -10.35 4.91 -55.08 -0.27 -10.62 16 15 C 0.60 9.15 7.75 -12.86 -0.10 9.05 16 16 O -0.51 -9.38 16.53 5.19 0.09 -9.30 16 17 C -0.03 -0.43 7.13 -36.80 -0.26 -0.69 16 18 C -0.13 -1.48 10.62 -39.39 -0.42 -1.90 16 19 C -0.16 -1.48 10.77 -39.89 -0.43 -1.91 16 20 C -0.09 -0.83 6.75 -35.41 -0.24 -1.07 16 21 C 0.36 2.55 5.76 36.01 0.21 2.75 16 22 F -0.18 -1.51 17.32 2.25 0.04 -1.48 16 23 F -0.18 -1.50 17.32 2.25 0.04 -1.46 16 24 O -0.15 -1.63 10.40 5.00 0.05 -1.58 16 25 C 0.07 1.29 3.14 -26.61 -0.08 1.20 16 26 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 27 O -0.57 -9.42 13.16 -35.23 -0.46 -9.88 16 28 C 0.15 3.32 4.93 -3.71 -0.02 3.31 16 29 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 30 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 1.23 7.93 -51.93 -0.41 0.82 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.40 5.18 8.36 -40.82 -0.34 4.84 16 35 H 0.17 1.68 8.06 -52.49 -0.42 1.26 16 36 H 0.16 1.15 8.06 -52.48 -0.42 0.73 16 37 H 0.13 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.38 4.92 9.08 45.56 0.41 5.33 16 39 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.09 2.31 6.07 -51.93 -0.31 2.00 16 LS Contribution 350.55 15.07 5.28 5.28 Total: -1.00 -31.02 350.55 -6.03 -37.05 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -3.98 Total: 8.33 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: -1.89 Total: 6.85 kcal Atomic # 7 Polarization: -49.37 SS G_CDS: -0.17 Total: -49.53 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -0.33 Total: -20.75 kcal Atomic # 9 Polarization: -3.01 SS G_CDS: 0.08 Total: -2.94 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.03 Total: 15.71 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.02 -6.03 -37.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090772059.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.702 kcal (2) G-P(sol) polarization free energy of solvation -31.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds