Wall clock time and date at job start Tue Mar 31 2020 06:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 120.00188 * 2 1 4 4 H 1.48497 * 109.46978 * 354.92637 * 3 2 1 5 5 H 1.48493 * 109.47427 * 114.92805 * 3 2 1 6 6 H 1.48497 * 109.46933 * 234.93193 * 3 2 1 7 7 C 1.38814 * 119.99973 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00402 * 354.53108 * 7 2 1 9 9 N 1.36939 * 120.00009 * 174.52296 * 7 2 1 10 10 C 1.47254 * 135.94483 * 7.25710 * 9 7 2 11 11 C 1.52726 * 87.62196 * 153.82556 * 10 9 7 12 12 C 1.47269 * 135.94367 * 187.62934 * 9 7 2 13 13 C 1.53375 * 115.73676 * 141.63705 * 11 10 9 14 14 C 1.54769 * 101.46934 * 156.55216 * 13 11 10 15 15 H 1.08997 * 110.55712 * 217.08334 * 14 13 11 16 16 N 1.46498 * 110.48010 * 94.54653 * 14 13 11 17 17 C 1.34773 * 119.99715 * 158.64304 * 16 14 13 18 18 O 1.21494 * 120.00594 * 0.02562 * 17 16 14 19 19 C 1.48284 * 119.99610 * 180.02562 * 17 16 14 20 20 C 1.47487 * 128.71086 * 180.02562 * 19 17 16 21 21 N 1.30639 * 102.71709 * 179.97438 * 20 19 17 22 22 O 1.20840 * 109.61973 * 359.97438 * 21 20 19 23 23 N 1.20903 * 115.90607 * 359.73334 * 22 21 20 24 24 C 1.51662 * 104.31103 * 335.83531 * 14 13 11 25 25 N 1.30852 * 141.39083 * 196.13856 * 24 14 13 26 26 C 1.33974 * 109.35922 * 180.26324 * 25 24 14 27 27 C 1.34518 * 108.04799 * 359.93950 * 26 25 24 28 28 N 1.35131 * 110.00691 * 16.25895 * 24 14 13 29 29 H 0.97005 * 119.99947 * 174.79843 * 1 2 3 30 30 H 1.09001 * 113.51633 * 268.49382 * 10 9 7 31 31 H 1.09003 * 113.50599 * 39.06861 * 10 9 7 32 32 H 1.08993 * 113.50807 * 320.93927 * 12 9 7 33 33 H 1.09004 * 113.50894 * 91.50940 * 12 9 7 34 34 H 1.09007 * 111.02272 * 274.58385 * 13 11 10 35 35 H 1.08999 * 111.03182 * 38.49235 * 13 11 10 36 36 H 0.97000 * 120.00034 * 338.65225 * 16 14 13 37 37 H 1.08003 * 128.63974 * 359.93470 * 20 19 17 38 38 H 1.08001 * 125.97624 * 179.90889 * 26 25 24 39 39 H 1.08005 * 126.53602 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2900 2.7437 -0.1238 5 1 3.0088 1.7514 1.2696 6 1 3.1944 1.6441 -1.1459 7 6 2.0103 -1.2022 0.0005 8 1 1.4740 -2.1353 0.0901 9 7 3.3750 -1.2049 -0.1127 10 6 4.4383 -0.1863 -0.1203 11 6 5.3885 -1.2660 0.3933 12 6 4.4204 -2.2274 -0.2866 13 6 6.8104 -1.2298 -0.1807 14 6 7.6069 -1.9655 0.9237 15 1 8.5901 -1.5130 1.0523 16 7 7.7374 -3.3883 0.6000 17 6 8.7206 -4.1196 1.1612 18 8 9.4984 -3.5991 1.9359 19 6 8.8530 -5.5596 0.8331 20 6 9.8451 -6.5313 1.3298 21 7 9.4970 -7.6340 0.7218 22 8 8.5352 -7.4246 0.0209 23 7 8.1108 -6.2926 0.0308 24 6 6.7705 -1.7811 2.1752 25 7 6.8457 -1.8742 3.4783 26 6 5.6614 -1.5524 4.0156 27 6 4.8182 -1.2465 3.0132 28 7 5.5207 -1.3892 1.8425 29 1 -0.4850 -0.8366 -0.0762 30 1 4.6882 0.1740 -1.1182 31 1 4.2710 0.6222 0.5914 32 1 4.2380 -3.1373 0.2850 33 1 4.6654 -2.4257 -1.3301 34 1 6.8641 -1.7690 -1.1265 35 1 7.1593 -0.2037 -0.2970 36 1 7.1163 -3.8040 -0.0184 37 1 10.6576 -6.3710 2.0230 38 1 5.4249 -1.5410 5.0694 39 1 3.7855 -0.9458 3.1108 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092403543.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:02 Heat of formation + Delta-G solvation = 240.605884 kcal Electronic energy + Delta-G solvation = -28254.592998 eV Core-core repulsion = 24207.373994 eV Total energy + Delta-G solvation = -4047.219004 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.123 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -47.28057 -42.55367 -39.93415 -39.02844 -36.07854 -35.13849 -34.83605 -33.48305 -32.18213 -30.93757 -28.65609 -27.79803 -26.45689 -25.93898 -24.59910 -24.10051 -22.03683 -21.44008 -21.13158 -20.24629 -19.39558 -19.09902 -18.93265 -17.98088 -17.69719 -16.97495 -16.24101 -15.49249 -15.38283 -15.03709 -14.79885 -14.58087 -14.40464 -14.07189 -13.80968 -13.52201 -13.37942 -13.26338 -12.99874 -12.58945 -12.34535 -12.29693 -12.27828 -11.72038 -11.39221 -11.15772 -11.12216 -10.81746 -10.73968 -10.64312 -9.81443 -9.72591 -9.65377 -9.36511 -9.16360 -9.12282 -8.19947 -7.46845 -6.50127 -3.47988 0.38138 0.96221 1.95073 2.44868 2.59893 2.89555 3.03037 3.11609 3.21255 3.24529 3.36827 3.45516 3.63601 3.75264 4.15398 4.26127 4.38203 4.39186 4.42634 4.46082 4.62725 4.97136 5.10717 5.21161 5.26975 5.37232 5.43235 5.49457 5.75060 5.78421 5.86489 5.90736 5.94520 5.95825 6.20210 6.65685 6.74748 6.89161 7.05923 7.31073 7.59015 8.02989 8.03061 8.33250 8.74821 9.24891 10.05293 10.99225 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.018182 B = 0.003516 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.583537 B = 7961.520144 C = 8598.204512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.018 4.018 3 Si 1.065 2.935 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.311 4.311 8 H 0.085 0.915 9 N -0.618 5.618 10 C 0.098 3.902 11 C 0.105 3.895 12 C 0.122 3.878 13 C -0.118 4.118 14 C 0.234 3.766 15 H 0.122 0.878 16 N -0.700 5.700 17 C 0.610 3.390 18 O -0.493 6.493 19 C -0.040 4.040 20 C 0.040 3.960 21 N -0.354 5.354 22 O 0.343 5.657 23 N -0.319 5.319 24 C 0.149 3.851 25 N -0.460 5.460 26 C -0.042 4.042 27 C 0.005 3.995 28 N -0.431 5.431 29 H 0.264 0.736 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.060 0.940 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.410 0.590 37 H 0.229 0.771 38 H 0.173 0.827 39 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.340 -7.752 -1.062 20.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.218 4.218 3 Si 0.897 3.103 4 H -0.217 1.217 5 H -0.221 1.221 6 H -0.213 1.213 7 C -0.437 4.437 8 H 0.103 0.897 9 N -0.346 5.346 10 C -0.028 4.028 11 C 0.018 3.982 12 C -0.005 4.005 13 C -0.158 4.158 14 C 0.127 3.873 15 H 0.140 0.860 16 N -0.353 5.353 17 C 0.392 3.608 18 O -0.364 6.364 19 C -0.205 4.205 20 C -0.146 4.146 21 N -0.077 5.077 22 O 0.117 5.883 23 N -0.039 5.039 24 C -0.114 4.114 25 N -0.179 5.179 26 C -0.190 4.190 27 C -0.129 4.129 28 N -0.113 5.113 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.246 0.754 37 H 0.245 0.755 38 H 0.190 0.810 39 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 19.344 -6.688 -0.733 20.481 hybrid contribution -0.767 -1.046 -0.114 1.302 sum 18.578 -7.734 -0.847 20.141 Atomic orbital electron populations 1.70907 1.05404 1.29457 1.50917 1.25710 0.96433 1.00874 0.98772 0.83788 0.74115 0.76335 0.76072 1.21740 1.22055 1.21286 1.20128 0.77482 0.95998 1.50094 0.89719 1.46035 1.01600 1.01200 1.85808 1.23025 0.86722 0.93624 0.99385 1.22354 0.95016 1.02848 0.77972 1.22624 0.86636 0.93767 0.97460 1.22807 0.91865 1.03104 0.97981 1.19794 0.99393 0.80407 0.87661 0.85994 1.45806 1.31929 1.10244 1.47287 1.16411 0.81753 0.81872 0.80736 1.90896 1.42381 1.70107 1.32983 1.26246 0.95911 0.98761 0.99621 1.27762 1.01068 0.85107 1.00661 1.75088 1.02146 1.24069 1.06433 1.85101 1.32170 1.23213 1.47852 1.75410 1.19154 0.92845 1.16478 1.24317 0.87071 1.07006 0.92958 1.69795 1.24514 1.19388 1.04167 1.22254 0.89253 1.08343 0.99140 1.22602 0.99795 1.07706 0.82747 1.45692 1.11681 1.48459 1.05496 0.92626 0.91404 0.91818 0.92907 0.92227 0.87023 0.87027 0.75369 0.75493 0.80966 0.80884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.98 13.70 55.49 0.76 -27.22 16 2 C -0.02 -0.50 5.50 -17.43 -0.10 -0.60 16 3 Si 1.06 25.04 25.17 -169.99 -4.28 20.76 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -6.57 6.49 56.52 0.37 -6.21 16 6 H -0.29 -6.09 6.18 56.52 0.35 -5.74 16 7 C -0.31 -8.37 11.08 -15.06 -0.17 -8.53 16 8 H 0.09 2.45 8.06 -52.49 -0.42 2.02 16 9 N -0.62 -13.65 3.70 -184.73 -0.68 -14.33 16 10 C 0.10 1.82 5.22 -7.78 -0.04 1.78 16 11 C 0.10 1.58 1.64 -133.40 -0.22 1.37 16 12 C 0.12 2.08 8.18 -7.92 -0.06 2.01 16 13 C -0.12 -1.19 6.15 -25.61 -0.16 -1.35 16 14 C 0.23 2.76 3.23 -67.68 -0.22 2.54 16 15 H 0.12 1.36 7.66 -51.93 -0.40 0.96 16 16 N -0.70 -7.59 5.12 -54.37 -0.28 -7.87 16 17 C 0.61 7.21 7.84 -12.13 -0.10 7.11 16 18 O -0.49 -7.10 16.75 5.37 0.09 -7.01 16 19 C -0.04 -0.40 7.56 -80.07 -0.61 -1.01 16 20 C 0.04 0.33 12.63 -14.29 -0.18 0.15 16 21 N -0.35 -3.23 12.22 30.71 0.38 -2.85 16 22 O 0.34 3.24 11.65 27.26 0.32 3.56 16 23 N -0.32 -3.20 12.13 33.49 0.41 -2.79 16 24 C 0.15 2.40 8.22 -154.57 -1.27 1.13 16 25 N -0.46 -8.27 11.25 -10.49 -0.12 -8.38 16 26 C -0.04 -0.70 11.86 -17.93 -0.21 -0.91 16 27 C 0.01 0.10 12.03 -16.43 -0.20 -0.10 16 28 N -0.43 -7.28 3.42 -100.94 -0.34 -7.63 16 29 H 0.26 7.89 8.73 -40.82 -0.36 7.53 16 30 H 0.07 1.14 7.60 -51.93 -0.39 0.74 16 31 H 0.06 1.28 4.80 -51.93 -0.25 1.03 16 32 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.06 0.87 7.98 -51.93 -0.41 0.45 16 34 H 0.11 0.81 7.75 -51.92 -0.40 0.41 16 35 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.41 3.91 8.42 -40.82 -0.34 3.56 16 37 H 0.23 1.15 8.06 -52.48 -0.42 0.73 16 38 H 0.17 2.37 8.06 -52.49 -0.42 1.95 16 39 H 0.17 3.15 8.06 -52.48 -0.42 2.73 16 LS Contribution 337.50 15.07 5.09 5.09 Total: -1.00 -34.38 337.50 -6.17 -40.55 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -3.98 Total: 4.55 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: -3.53 Total: 3.58 kcal Atomic # 7 Polarization: -71.19 SS G_CDS: 0.12 Total: -71.07 kcal Atomic # 8 Polarization: -3.86 SS G_CDS: 0.41 Total: -3.45 kcal Atomic # 14 Polarization: 25.04 SS G_CDS: -4.28 Total: 20.76 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.38 -6.17 -40.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092403543.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 281.155 kcal (2) G-P(sol) polarization free energy of solvation -34.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 246.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 240.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds