Wall clock time and date at job start Tue Mar 31 2020 06:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 120.00188 * 2 1 4 4 H 1.48497 * 109.46978 * 354.92637 * 3 2 1 5 5 H 1.48493 * 109.47427 * 114.92805 * 3 2 1 6 6 H 1.48497 * 109.46933 * 234.93193 * 3 2 1 7 7 C 1.38814 * 119.99973 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00402 * 354.53108 * 7 2 1 9 9 N 1.36939 * 120.00009 * 174.52296 * 7 2 1 10 10 C 1.47254 * 135.94483 * 7.25710 * 9 7 2 11 11 C 1.52726 * 87.62196 * 153.82556 * 10 9 7 12 12 C 1.47269 * 135.94367 * 187.62934 * 9 7 2 13 13 C 1.53375 * 115.73676 * 141.63705 * 11 10 9 14 14 C 1.54769 * 101.46934 * 156.55216 * 13 11 10 15 15 H 1.08997 * 110.55712 * 217.08334 * 14 13 11 16 16 N 1.46498 * 110.48010 * 94.54653 * 14 13 11 17 17 C 1.34773 * 119.99715 * 158.64304 * 16 14 13 18 18 O 1.21494 * 120.00594 * 0.02562 * 17 16 14 19 19 C 1.48284 * 119.99610 * 180.02562 * 17 16 14 20 20 C 1.47487 * 128.71086 * 180.02562 * 19 17 16 21 21 N 1.30639 * 102.71709 * 179.97438 * 20 19 17 22 22 O 1.20840 * 109.61973 * 359.97438 * 21 20 19 23 23 N 1.20903 * 115.90607 * 359.73334 * 22 21 20 24 24 C 1.51662 * 104.31103 * 335.83531 * 14 13 11 25 25 N 1.30852 * 141.39083 * 196.13856 * 24 14 13 26 26 C 1.33974 * 109.35922 * 180.26324 * 25 24 14 27 27 C 1.34518 * 108.04799 * 359.93950 * 26 25 24 28 28 N 1.35131 * 110.00691 * 16.25895 * 24 14 13 29 29 H 0.97005 * 119.99947 * 174.79843 * 1 2 3 30 30 H 1.09001 * 113.51633 * 268.49382 * 10 9 7 31 31 H 1.09003 * 113.50599 * 39.06861 * 10 9 7 32 32 H 1.08993 * 113.50807 * 320.93927 * 12 9 7 33 33 H 1.09004 * 113.50894 * 91.50940 * 12 9 7 34 34 H 1.09007 * 111.02272 * 274.58385 * 13 11 10 35 35 H 1.08999 * 111.03182 * 38.49235 * 13 11 10 36 36 H 0.97000 * 120.00034 * 338.65225 * 16 14 13 37 37 H 1.08003 * 128.63974 * 359.93470 * 20 19 17 38 38 H 1.08001 * 125.97624 * 179.90889 * 26 25 24 39 39 H 1.08005 * 126.53602 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2900 2.7437 -0.1238 5 1 3.0088 1.7514 1.2696 6 1 3.1944 1.6441 -1.1459 7 6 2.0103 -1.2022 0.0005 8 1 1.4740 -2.1353 0.0901 9 7 3.3750 -1.2049 -0.1127 10 6 4.4383 -0.1863 -0.1203 11 6 5.3885 -1.2660 0.3933 12 6 4.4204 -2.2274 -0.2866 13 6 6.8104 -1.2298 -0.1807 14 6 7.6069 -1.9655 0.9237 15 1 8.5901 -1.5130 1.0523 16 7 7.7374 -3.3883 0.6000 17 6 8.7206 -4.1196 1.1612 18 8 9.4984 -3.5991 1.9359 19 6 8.8530 -5.5596 0.8331 20 6 9.8451 -6.5313 1.3298 21 7 9.4970 -7.6340 0.7218 22 8 8.5352 -7.4246 0.0209 23 7 8.1108 -6.2926 0.0308 24 6 6.7705 -1.7811 2.1752 25 7 6.8457 -1.8742 3.4783 26 6 5.6614 -1.5524 4.0156 27 6 4.8182 -1.2465 3.0132 28 7 5.5207 -1.3892 1.8425 29 1 -0.4850 -0.8366 -0.0762 30 1 4.6882 0.1740 -1.1182 31 1 4.2710 0.6222 0.5914 32 1 4.2380 -3.1373 0.2850 33 1 4.6654 -2.4257 -1.3301 34 1 6.8641 -1.7690 -1.1265 35 1 7.1593 -0.2037 -0.2970 36 1 7.1163 -3.8040 -0.0184 37 1 10.6576 -6.3710 2.0230 38 1 5.4249 -1.5410 5.0694 39 1 3.7855 -0.9458 3.1108 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092403543.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:01 Heat of formation + Delta-G solvation = 214.079100 kcal Electronic energy + Delta-G solvation = -28255.743286 eV Core-core repulsion = 24207.373994 eV Total energy + Delta-G solvation = -4048.369292 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.123 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -47.99178 -43.78932 -40.88724 -40.40135 -37.16907 -35.89375 -35.56631 -34.98758 -33.87856 -32.06470 -30.13335 -29.12008 -27.50631 -27.26231 -25.65457 -25.04861 -23.18037 -22.79677 -22.32742 -21.44155 -20.46777 -20.10818 -19.78708 -19.55764 -18.74073 -18.08304 -17.57470 -16.50510 -16.44282 -16.23238 -16.03213 -15.88251 -15.65125 -15.30868 -15.20462 -15.01371 -14.71385 -14.34687 -13.93516 -13.79881 -13.66944 -13.34182 -13.00949 -12.89936 -12.60001 -12.44485 -12.39536 -12.13780 -11.87870 -11.70538 -11.42473 -11.30273 -11.14450 -11.01502 -10.67808 -10.46986 -9.50352 -9.35053 -8.68388 -5.56652 -0.39850 0.29841 0.81927 1.31660 1.41313 1.42836 1.60622 1.67768 1.75641 2.07181 2.34432 2.44919 2.48402 2.61515 2.84811 2.88074 3.07258 3.14030 3.35425 3.54234 3.67049 3.71994 3.90215 4.06706 4.31058 4.36603 4.43723 4.46780 4.50545 4.52606 4.60718 4.68461 4.75294 4.90608 5.03940 5.08175 5.35247 5.78498 5.86632 6.01513 6.09569 6.60252 6.72679 7.05382 7.22760 7.31538 8.12046 8.82960 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.018182 B = 0.003516 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.583537 B = 7961.520144 C = 8598.204512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.079 4.079 3 Si 1.104 2.896 4 H -0.308 1.308 5 H -0.283 1.283 6 H -0.242 1.242 7 C -0.289 4.289 8 H 0.045 0.955 9 N -0.654 5.654 10 C 0.091 3.909 11 C 0.117 3.883 12 C 0.123 3.877 13 C -0.100 4.100 14 C 0.236 3.764 15 H 0.137 0.863 16 N -0.692 5.692 17 C 0.614 3.386 18 O -0.520 6.520 19 C -0.052 4.052 20 C 0.054 3.946 21 N -0.362 5.362 22 O 0.342 5.658 23 N -0.322 5.322 24 C 0.157 3.843 25 N -0.494 5.494 26 C -0.036 4.036 27 C -0.026 4.026 28 N -0.443 5.443 29 H 0.247 0.753 30 H 0.103 0.897 31 H 0.047 0.953 32 H 0.035 0.965 33 H 0.102 0.898 34 H 0.152 0.848 35 H 0.144 0.856 36 H 0.418 0.582 37 H 0.256 0.744 38 H 0.192 0.808 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.206 -7.579 -2.608 24.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.272 4.272 3 Si 0.930 3.070 4 H -0.236 1.236 5 H -0.211 1.211 6 H -0.166 1.166 7 C -0.416 4.416 8 H 0.063 0.937 9 N -0.383 5.383 10 C -0.033 4.033 11 C 0.031 3.969 12 C -0.003 4.003 13 C -0.139 4.139 14 C 0.129 3.871 15 H 0.155 0.845 16 N -0.346 5.346 17 C 0.397 3.603 18 O -0.393 6.393 19 C -0.218 4.218 20 C -0.132 4.132 21 N -0.087 5.087 22 O 0.116 5.884 23 N -0.041 5.041 24 C -0.106 4.106 25 N -0.213 5.213 26 C -0.184 4.184 27 C -0.160 4.160 28 N -0.125 5.125 29 H 0.056 0.944 30 H 0.120 0.880 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.120 0.880 34 H 0.170 0.830 35 H 0.162 0.838 36 H 0.255 0.745 37 H 0.272 0.728 38 H 0.209 0.791 39 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 23.249 -6.558 -2.313 24.266 hybrid contribution -1.924 -1.286 0.439 2.355 sum 21.325 -7.843 -1.873 22.799 Atomic orbital electron populations 1.71015 1.06960 1.28502 1.54970 1.27022 0.96377 1.04486 0.99266 0.83349 0.73644 0.71926 0.78063 1.23587 1.21050 1.16609 1.19872 0.80330 0.94233 1.47195 0.93666 1.46018 1.00792 1.04902 1.86608 1.23304 0.85924 0.93320 1.00781 1.22358 0.97536 0.99920 0.77095 1.22915 0.85260 0.92515 0.99578 1.23030 0.86983 1.05490 0.98394 1.20029 0.99683 0.81111 0.86261 0.84549 1.45753 1.31762 1.10015 1.47021 1.16531 0.81395 0.82317 0.80105 1.90887 1.43458 1.70801 1.34197 1.26133 0.96856 0.98328 1.00445 1.28247 1.00834 0.84050 1.00025 1.75110 1.02267 1.24465 1.06877 1.85104 1.32362 1.22938 1.48005 1.75387 1.19192 0.93067 1.16432 1.25210 0.87301 1.04673 0.93465 1.69825 1.24970 1.20952 1.05556 1.22603 0.88822 1.06979 1.00012 1.22520 0.99577 1.09833 0.84057 1.45910 1.11882 1.48667 1.06001 0.94427 0.87961 0.93477 0.94635 0.88050 0.83002 0.83849 0.74454 0.72758 0.79075 0.82658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.30 13.70 21.65 0.30 -61.01 16 2 C -0.08 -4.55 5.50 84.86 0.47 -4.08 16 3 Si 1.10 50.30 25.17 68.60 1.73 52.03 16 4 H -0.31 -14.76 7.11 99.48 0.71 -14.06 16 5 H -0.28 -12.27 6.49 99.48 0.65 -11.63 16 6 H -0.24 -9.16 6.18 99.48 0.61 -8.55 16 7 C -0.29 -15.91 11.08 84.03 0.93 -14.98 16 8 H 0.05 2.77 8.06 -2.91 -0.02 2.75 16 9 N -0.65 -28.03 3.70 -738.35 -2.73 -30.76 16 10 C 0.09 3.04 5.22 83.55 0.44 3.48 16 11 C 0.12 3.11 1.64 3.92 0.01 3.12 16 12 C 0.12 3.82 8.18 83.45 0.68 4.50 16 13 C -0.10 -1.43 6.15 31.32 0.19 -1.23 16 14 C 0.24 4.58 3.23 45.16 0.15 4.73 16 15 H 0.14 2.40 7.66 -2.39 -0.02 2.39 16 16 N -0.69 -12.54 5.12 -444.23 -2.28 -14.82 16 17 C 0.61 12.80 7.84 86.92 0.68 13.48 16 18 O -0.52 -13.71 16.75 -3.70 -0.06 -13.78 16 19 C -0.05 -0.93 7.56 44.29 0.34 -0.60 16 20 C 0.05 0.75 12.63 87.31 1.10 1.86 16 21 N -0.36 -5.85 12.22 -61.44 -0.75 -6.60 16 22 O 0.34 5.83 11.65 140.85 1.64 7.47 16 23 N -0.32 -5.76 12.13 -52.07 -0.63 -6.39 16 24 C 0.16 4.67 8.22 138.30 1.14 5.81 16 25 N -0.49 -17.12 11.25 -187.09 -2.11 -19.23 16 26 C -0.04 -1.21 11.86 83.51 0.99 -0.22 16 27 C -0.03 -0.94 12.03 82.99 1.00 0.06 16 28 N -0.44 -14.15 3.42 -473.27 -1.62 -15.76 16 29 H 0.25 15.74 8.73 -92.70 -0.81 14.93 16 30 H 0.10 2.79 7.60 -2.39 -0.02 2.77 16 31 H 0.05 1.76 4.80 -2.39 -0.01 1.75 16 32 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.10 2.41 7.98 -2.39 -0.02 2.39 16 34 H 0.15 1.05 7.75 -2.38 -0.02 1.03 16 35 H 0.14 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.42 6.33 8.42 -92.71 -0.78 5.55 16 37 H 0.26 1.79 8.06 -2.91 -0.02 1.77 16 38 H 0.19 5.22 8.06 -2.91 -0.02 5.20 16 39 H 0.16 5.97 8.06 -2.91 -0.02 5.95 16 Total: -1.00 -79.95 337.50 1.76 -78.19 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: 0.16 Total: 14.73 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: 8.11 Total: 15.92 kcal Atomic # 7 Polarization: -144.75 SS G_CDS: -9.81 Total: -154.56 kcal Atomic # 8 Polarization: -7.88 SS G_CDS: 1.58 Total: -6.30 kcal Atomic # 14 Polarization: 50.30 SS G_CDS: 1.73 Total: 52.03 kcal Total: -79.95 1.76 -78.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092403543.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 292.269 kcal (2) G-P(sol) polarization free energy of solvation -79.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 212.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 214.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds