Wall clock time and date at job start Tue Mar 31 2020 05:12:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30118 * 121.06267 * 2 1 4 4 S 1.69950 * 105.76452 * 179.97438 * 3 2 1 5 5 C 1.72308 * 94.57329 * 359.97438 * 4 3 2 6 6 N 1.38312 * 127.50161 * 179.73682 * 5 4 3 7 7 C 1.46500 * 119.99661 * 180.02562 * 6 5 4 8 8 C 1.46490 * 120.00484 * 0.02562 * 6 5 4 9 9 C 1.53004 * 109.46954 * 90.00056 * 8 6 5 10 10 N 1.46503 * 109.47345 * 180.02562 * 9 8 6 11 11 C 1.46500 * 120.00057 * 90.00062 * 10 9 8 12 12 C 1.34774 * 119.99989 * 270.00315 * 10 9 8 13 13 O 1.21285 * 120.00265 * 359.97438 * 12 10 9 14 14 C 1.50705 * 120.00002 * 179.97438 * 12 10 9 15 15 S 1.81002 * 109.47100 * 179.97438 * 14 12 10 16 16 C 1.76194 * 99.99821 * 179.97438 * 15 14 12 17 17 H 1.07995 * 120.00250 * 0.02562 * 16 15 14 18 18 C 1.38802 * 119.99869 * 179.97438 * 16 15 14 19 19 N 1.31633 * 119.99813 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00050 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47305 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.47189 * 120.00029 * 20 18 16 23 23 H 1.48493 * 109.47345 * 240.00010 * 20 18 16 24 24 N 1.31294 * 121.05790 * 179.97438 * 2 1 3 25 25 H 1.09001 * 109.46905 * 89.97696 * 1 2 3 26 26 H 1.08993 * 109.47777 * 209.97888 * 1 2 3 27 27 H 1.08998 * 109.47478 * 329.98472 * 1 2 3 28 28 H 1.09000 * 109.47399 * 89.99955 * 7 6 5 29 29 H 1.09004 * 109.47389 * 210.00072 * 7 6 5 30 30 H 1.09002 * 109.47126 * 329.99932 * 7 6 5 31 31 H 1.08994 * 109.47771 * 210.00309 * 8 6 5 32 32 H 1.09000 * 109.47127 * 330.00346 * 8 6 5 33 33 H 1.09001 * 109.47048 * 300.00235 * 9 8 6 34 34 H 1.09000 * 109.46967 * 60.00192 * 9 8 6 35 35 H 1.09000 * 109.47399 * 90.00080 * 11 10 9 36 36 H 1.09002 * 109.47126 * 210.00104 * 11 10 9 37 37 H 1.09000 * 109.46915 * 329.99929 * 11 10 9 38 38 H 1.08996 * 109.46648 * 299.99767 * 14 12 10 39 39 H 1.08999 * 109.47168 * 59.99807 * 14 12 10 40 40 H 0.97001 * 119.99901 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1784 1.1146 0.0000 4 16 3.8177 0.6662 0.0007 5 6 3.4970 -1.0268 0.0018 6 7 4.4184 -2.0583 -0.0023 7 6 3.9602 -3.4498 -0.0012 8 6 5.8525 -1.7595 -0.0078 9 6 6.3574 -1.6562 1.4328 10 7 7.7915 -1.3568 1.4275 11 6 8.2493 0.0348 1.4266 12 6 8.6897 -2.3616 1.4232 13 8 8.3108 -3.5138 1.4244 14 6 10.1649 -2.0536 1.4171 15 16 11.1043 -3.6008 1.4133 16 6 12.7462 -2.9618 1.4057 17 1 12.9103 -1.8944 1.4051 18 6 13.8289 -3.8303 1.4016 19 7 13.6290 -5.1314 1.4028 20 14 15.5697 -3.1529 1.3943 21 1 15.5233 -1.6686 1.3946 22 1 16.2899 -3.6254 2.6040 23 1 16.2800 -3.6261 0.1791 24 7 2.1844 -1.1247 0.0005 25 1 -0.3633 0.0004 -1.0277 26 1 -0.3634 -0.8901 0.5134 27 1 -0.3634 0.8898 0.5140 28 1 3.8424 -3.7944 -1.0286 29 1 4.6938 -4.0736 0.5094 30 1 3.0032 -3.5167 0.5163 31 1 6.3878 -2.5563 -0.5241 32 1 6.0247 -0.8139 -0.5218 33 1 5.8222 -0.8593 1.9491 34 1 6.1853 -2.6019 1.9468 35 1 8.3668 0.3793 2.4540 36 1 9.2063 0.1022 0.9091 37 1 7.5154 0.6584 0.9160 38 1 10.4117 -1.4761 0.5263 39 1 10.4194 -1.4767 2.3063 40 1 14.3856 -5.7383 1.4003 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105329005.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:47 Heat of formation + Delta-G solvation = 30.800858 kcal Electronic energy + Delta-G solvation = -22805.156801 eV Core-core repulsion = 19294.744040 eV Total energy + Delta-G solvation = -3510.412762 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 330.093 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.44557 -39.72392 -37.78423 -35.43576 -32.49190 -32.47946 -30.90477 -29.89653 -28.76982 -27.51995 -26.45392 -25.54940 -24.08506 -22.06096 -19.98976 -19.38041 -19.05598 -17.78160 -17.29747 -16.69159 -16.38870 -16.03144 -15.55795 -14.98153 -14.85012 -14.53313 -14.37910 -13.97150 -13.89083 -13.36774 -13.07350 -12.95729 -12.92591 -12.75267 -12.63491 -12.46720 -12.42267 -12.01075 -11.98440 -11.68235 -11.40300 -11.13231 -11.10802 -11.07213 -10.79885 -9.86408 -9.85545 -9.69639 -9.53314 -9.12344 -8.87740 -8.29744 -8.21618 -6.56664 -6.27040 -3.98121 0.49161 0.71499 1.54687 2.16097 2.44995 2.86140 2.91501 3.18062 3.22635 3.27629 3.52567 3.84818 4.15021 4.39870 4.61982 4.77756 4.88434 4.93731 5.00011 5.01989 5.08552 5.16445 5.17595 5.18759 5.32369 5.33545 5.45859 5.50744 5.54647 5.61504 5.66371 5.75063 5.81969 6.05468 6.14993 6.45146 6.47872 7.33291 7.50314 7.55071 8.30229 8.37939 9.18699 10.80404 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.035282 B = 0.002154 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.414035 B =12997.098108 C =13589.229340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.306 3.694 3 N -0.507 5.507 4 S 0.169 5.831 5 C 0.347 3.653 6 N -0.550 5.550 7 C 0.091 3.909 8 C 0.101 3.899 9 C 0.101 3.899 10 N -0.623 5.623 11 C 0.077 3.923 12 C 0.534 3.466 13 O -0.513 6.513 14 C -0.151 4.151 15 S -0.062 6.062 16 C -0.535 4.535 17 H 0.074 0.926 18 C 0.073 3.927 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.271 1.271 22 H -0.280 1.280 23 H -0.280 1.280 24 N -0.586 5.586 25 H 0.086 0.914 26 H 0.088 0.912 27 H 0.085 0.915 28 H 0.062 0.938 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.105 0.895 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.058 0.942 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.860 11.107 -2.759 24.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.016 3.984 3 N -0.341 5.341 4 S 0.304 5.696 5 C -0.031 4.031 6 N -0.267 5.267 7 C -0.053 4.053 8 C -0.023 4.023 9 C -0.025 4.025 10 N -0.359 5.359 11 C -0.066 4.066 12 C 0.322 3.678 13 O -0.387 6.387 14 C -0.301 4.301 15 S 0.165 5.835 16 C -0.683 4.683 17 H 0.092 0.908 18 C -0.136 4.136 19 N -0.502 5.502 20 Si 0.745 3.255 21 H -0.196 1.196 22 H -0.206 1.206 23 H -0.206 1.206 24 N -0.323 5.323 25 H 0.105 0.895 26 H 0.106 0.894 27 H 0.104 0.896 28 H 0.080 0.920 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.123 0.877 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.111 0.889 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -21.946 10.306 -2.758 24.402 hybrid contribution 1.160 0.981 -0.031 1.519 sum -20.786 11.287 -2.789 23.816 Atomic orbital electron populations 1.20387 0.84046 1.04257 1.04033 1.23200 0.99679 0.82287 0.93244 1.77538 0.97160 1.25238 1.34147 1.84956 1.13783 0.98087 1.72763 1.25244 0.90423 0.94865 0.92586 1.45933 1.03187 1.03621 1.73918 1.21947 1.01736 0.78835 1.02737 1.22327 0.77188 1.03804 0.99009 1.21725 0.81333 1.03580 0.95854 1.47807 1.05021 1.07122 1.75999 1.21856 1.01238 0.81268 1.02272 1.20448 0.87931 0.84599 0.74829 1.90698 1.80561 1.19885 1.47531 1.23564 0.93784 1.07846 1.04917 1.85390 0.99748 1.01658 1.96724 1.22889 0.91140 0.95318 1.58970 0.90833 1.24999 0.99484 0.94630 0.94488 1.70024 1.31722 1.01638 1.46848 0.86111 0.82417 0.79010 0.77933 1.19587 1.20552 1.20550 1.67327 1.02969 1.29865 1.32090 0.89522 0.89360 0.89636 0.91956 0.89717 0.89956 0.87725 0.89913 0.90440 0.88918 0.92322 0.90240 0.91189 0.89060 0.89097 0.92200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.45 10.42 36.01 0.38 -0.08 16 2 C 0.31 3.34 7.56 -159.04 -1.20 2.14 16 3 N -0.51 -6.14 12.15 29.54 0.36 -5.78 16 4 S 0.17 1.78 22.61 -107.50 -2.43 -0.65 16 5 C 0.35 3.77 7.94 -86.36 -0.69 3.09 16 6 N -0.55 -5.28 2.97 -183.07 -0.54 -5.83 16 7 C 0.09 0.76 10.60 59.85 0.63 1.39 16 8 C 0.10 0.95 5.78 -4.05 -0.02 0.93 16 9 C 0.10 1.05 5.73 -4.04 -0.02 1.03 16 10 N -0.62 -7.63 2.87 -181.56 -0.52 -8.15 16 11 C 0.08 0.69 10.24 59.85 0.61 1.30 16 12 C 0.53 9.15 7.69 -10.98 -0.08 9.06 16 13 O -0.51 -10.57 15.44 5.55 0.09 -10.49 16 14 C -0.15 -2.85 4.71 36.01 0.17 -2.68 16 15 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 16 C -0.53 -14.78 9.50 30.94 0.29 -14.49 16 17 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 18 C 0.07 2.04 5.49 -17.43 -0.10 1.95 16 19 N -0.87 -25.58 13.22 55.49 0.73 -24.85 16 20 Si 0.92 20.94 29.55 -169.99 -5.02 15.91 16 21 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 N -0.59 -6.79 10.06 -14.58 -0.15 -6.94 16 25 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.68 8.07 -51.93 -0.42 0.26 16 30 H 0.08 0.69 7.73 -51.93 -0.40 0.29 16 31 H 0.10 1.09 8.07 -51.93 -0.42 0.67 16 32 H 0.08 0.70 7.23 -51.93 -0.38 0.33 16 33 H 0.08 0.70 8.07 -51.93 -0.42 0.29 16 34 H 0.09 1.12 7.42 -51.93 -0.39 0.74 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.72 6.44 -51.93 -0.33 0.38 16 37 H 0.07 0.46 8.07 -51.93 -0.42 0.04 16 38 H 0.09 1.58 7.40 -51.92 -0.38 1.19 16 39 H 0.09 1.61 8.11 -51.92 -0.42 1.19 16 40 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 369.88 15.07 5.57 5.57 Total: -1.00 -34.68 369.88 -9.79 -44.47 By element: Atomic # 1 Polarization: 2.54 SS G_CDS: -5.64 Total: -3.10 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: -0.03 Total: 3.64 kcal Atomic # 7 Polarization: -51.43 SS G_CDS: -0.12 Total: -51.55 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.09 Total: -10.49 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 0.17 SS G_CDS: -4.64 Total: -4.47 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.68 -9.79 -44.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105329005.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.275 kcal (2) G-P(sol) polarization free energy of solvation -34.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds