Wall clock time and date at job start Tue Mar 31 2020 06:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31285 * 1 3 3 Si 1.86797 * 120.00276 * 2 1 4 4 H 1.48497 * 109.47201 * 274.96312 * 3 2 1 5 5 H 1.48505 * 109.46779 * 34.96309 * 3 2 1 6 6 H 1.48497 * 109.47314 * 154.96338 * 3 2 1 7 7 C 1.39003 * 119.99543 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99970 * 173.18398 * 7 2 1 9 9 N 1.37290 * 120.00381 * 353.18765 * 7 2 1 10 10 C 1.36440 * 126.06113 * 186.67083 * 9 7 2 11 11 C 1.35785 * 107.50374 * 179.97438 * 10 9 7 12 12 N 1.40296 * 126.10226 * 179.97438 * 11 10 9 13 13 C 1.34774 * 119.99823 * 179.97438 * 12 11 10 14 14 O 1.21405 * 120.00372 * 0.02562 * 13 12 11 15 15 C 1.49309 * 119.99741 * 179.97438 * 13 12 11 16 16 O 1.21374 * 120.00047 * 353.58983 * 15 13 12 17 17 N 1.34775 * 120.00290 * 173.58690 * 15 13 12 18 18 C 1.46939 * 120.66533 * 172.70027 * 17 15 13 19 19 C 1.53385 * 109.44026 * 114.01711 * 18 17 15 20 20 C 1.50839 * 108.65569 * 45.85421 * 19 18 17 21 21 C 1.34674 * 128.08746 * 162.33585 * 20 19 18 22 22 N 1.35175 * 107.66659 * 179.97438 * 21 20 19 23 23 H 0.97005 * 126.00217 * 179.79558 * 22 21 20 24 24 N 1.40327 * 107.99308 * 359.66087 * 22 21 20 25 25 C 1.30016 * 108.07380 * 0.42428 * 24 22 21 26 26 C 1.47417 * 120.65806 * 352.72521 * 17 15 13 27 27 C 1.40722 * 107.80013 * 0.22824 * 11 10 9 28 28 N 1.30879 * 108.37288 * 359.61541 * 27 11 10 29 29 H 0.97007 * 119.99534 * 359.97438 * 1 2 3 30 30 H 1.08007 * 126.24755 * 0.02844 * 10 9 7 31 31 H 0.96998 * 119.99697 * 0.02562 * 12 11 10 32 32 H 1.09000 * 109.47808 * 234.01252 * 18 17 15 33 33 H 1.09001 * 109.47331 * 354.02100 * 18 17 15 34 34 H 1.08997 * 109.61203 * 286.09967 * 19 18 17 35 35 H 1.08994 * 109.60325 * 165.60203 * 19 18 17 36 36 H 1.08003 * 126.16286 * 359.70942 * 21 20 19 37 37 H 1.08995 * 109.94090 * 105.83959 * 26 17 15 38 38 H 1.09003 * 109.93845 * 344.60628 * 26 17 15 39 39 H 1.08000 * 125.81572 * 179.73407 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2469 1.6177 0.0000 4 1 2.3895 2.1069 -1.3948 5 1 1.5007 2.6200 0.8024 6 1 3.5930 1.4121 0.5925 7 6 2.0078 -1.2039 -0.0005 8 1 3.0820 -1.2072 -0.1115 9 7 1.3286 -2.3887 0.1400 10 6 1.8898 -3.6239 0.2841 11 6 0.8774 -4.5224 0.3922 12 7 1.0165 -5.9089 0.5546 13 6 -0.0782 -6.6894 0.6495 14 8 -1.1846 -6.1927 0.5940 15 6 0.0699 -8.1651 0.8218 16 8 1.1691 -8.6761 0.7599 17 7 -1.0170 -8.9298 1.0461 18 6 -0.9125 -10.3954 1.0591 19 6 -1.2057 -10.9156 2.4720 20 6 -2.4361 -10.2187 2.9970 21 6 -3.2239 -10.5864 4.0255 22 7 -4.2079 -9.6664 4.1379 23 1 -4.9244 -9.6747 4.7917 24 7 -4.0090 -8.6954 3.1445 25 6 -2.9541 -9.0279 2.4610 26 6 -2.3346 -8.3125 1.2827 27 6 -0.3362 -3.8153 0.3062 28 7 -0.0634 -2.5435 0.1612 29 1 -0.4850 0.8401 0.0004 30 1 2.9464 -3.8464 0.3088 31 1 1.9005 -6.3057 0.5993 32 1 -1.6338 -10.8175 0.3594 33 1 0.0948 -10.6905 0.7649 34 1 -0.3584 -10.7022 3.1236 35 1 -1.3814 -11.9907 2.4367 36 1 -3.0954 -11.4612 4.6457 37 1 -2.9651 -8.4329 0.4017 38 1 -2.2133 -7.2539 1.5123 39 1 -1.3246 -4.2481 0.3539 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116354721.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:31 Heat of formation + Delta-G solvation = 118.180654 kcal Electronic energy + Delta-G solvation = -27193.542138 eV Core-core repulsion = 23141.014377 eV Total energy + Delta-G solvation = -4052.527761 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.123 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.70229 -40.54951 -39.52449 -38.02876 -36.63565 -34.40250 -33.22218 -32.67966 -31.85018 -30.32594 -29.14269 -28.09320 -26.84539 -25.43517 -24.37930 -22.57696 -21.41121 -20.95686 -20.26851 -19.51573 -19.05669 -17.90086 -17.63821 -17.15618 -16.52783 -16.08551 -15.53849 -15.30015 -15.16239 -14.97393 -14.57096 -14.18779 -13.86170 -13.82077 -13.68411 -13.19055 -13.10902 -13.05146 -12.90717 -12.43185 -12.18350 -11.73842 -11.49621 -11.47206 -11.28120 -11.13943 -10.86234 -10.68189 -10.54623 -10.28352 -9.70582 -9.23166 -8.98745 -8.89477 -8.79511 -8.63803 -8.12680 -6.78458 -6.61098 -4.27655 1.60412 1.69243 2.37186 2.52111 2.70704 2.93248 3.04356 3.09616 3.29021 3.62513 3.69638 3.84657 4.30535 4.36952 4.49292 4.52336 4.76614 4.91496 4.97028 4.98721 5.15412 5.29791 5.42438 5.45622 5.66792 5.73179 5.83514 5.86466 6.17925 6.23424 6.35929 6.38530 6.75298 6.89413 6.95818 7.03581 7.10451 7.16531 7.47717 7.68232 7.82423 8.08004 8.18196 8.46979 8.68709 9.31395 9.59854 10.35010 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.023672 B = 0.002513 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.572737 B =11141.241064 C =11980.695860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.047 3.953 3 Si 0.935 3.065 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.263 1.263 7 C -0.322 4.322 8 H 0.118 0.882 9 N -0.138 5.138 10 C -0.076 4.076 11 C -0.071 4.071 12 N -0.579 5.579 13 C 0.484 3.516 14 O -0.516 6.516 15 C 0.522 3.478 16 O -0.526 6.526 17 N -0.585 5.585 18 C 0.110 3.890 19 C -0.054 4.054 20 C -0.237 4.237 21 C 0.062 3.938 22 N -0.485 5.485 23 H 0.439 0.561 24 N -0.274 5.274 25 C 0.069 3.931 26 C 0.166 3.834 27 C -0.024 4.024 28 N -0.261 5.261 29 H 0.276 0.724 30 H 0.149 0.851 31 H 0.410 0.590 32 H 0.077 0.923 33 H 0.099 0.901 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.176 0.824 37 H 0.094 0.906 38 H 0.155 0.845 39 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.448 -20.344 5.852 21.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.171 4.171 3 Si 0.758 3.242 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.187 1.187 7 C -0.455 4.455 8 H 0.136 0.864 9 N 0.095 4.905 10 C -0.227 4.227 11 C -0.177 4.177 12 N -0.221 5.221 13 C 0.266 3.734 14 O -0.395 6.395 15 C 0.305 3.695 16 O -0.401 6.401 17 N -0.319 5.319 18 C -0.012 4.012 19 C -0.093 4.093 20 C -0.249 4.249 21 C -0.084 4.084 22 N -0.193 5.193 23 H 0.283 0.717 24 N -0.097 5.097 25 C -0.101 4.101 26 C 0.043 3.957 27 C -0.200 4.200 28 N -0.092 5.092 29 H 0.086 0.914 30 H 0.167 0.833 31 H 0.245 0.755 32 H 0.095 0.905 33 H 0.118 0.882 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.193 0.807 37 H 0.112 0.888 38 H 0.172 0.828 39 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -5.230 -18.087 5.768 19.691 hybrid contribution 1.340 -1.167 0.587 1.872 sum -3.889 -19.254 6.356 20.645 Atomic orbital electron populations 1.70217 1.06204 1.28151 1.34660 1.25665 0.95701 1.00357 0.95348 0.85806 0.79549 0.79909 0.78886 1.19604 1.20003 1.18682 1.19912 0.92393 0.80666 1.52510 0.86444 1.44564 1.04051 1.03890 1.37987 1.21315 0.96980 0.85781 1.18657 1.17250 0.94657 0.81138 1.24644 1.42150 1.08588 1.05446 1.65880 1.19617 0.85285 0.86799 0.81748 1.90473 1.24526 1.74037 1.50432 1.20216 0.84003 0.88077 0.77196 1.90725 1.24783 1.74681 1.49959 1.47836 1.08438 1.06628 1.69016 1.21674 1.03931 0.78755 0.96847 1.20310 0.94192 0.98877 0.95962 1.19991 1.02953 1.00007 1.01976 1.22062 0.90850 0.96078 0.99454 1.46376 1.24832 1.19335 1.28757 0.71666 1.77071 1.19170 1.11456 1.01958 1.22713 0.93973 0.95298 0.98084 1.21060 0.81583 1.00316 0.92786 1.24165 0.97896 0.90962 1.06980 1.78264 0.90299 1.15013 1.25620 0.91355 0.83336 0.75533 0.90462 0.88242 0.90711 0.89959 0.80686 0.88798 0.82802 0.80440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.06 11.84 55.50 0.66 -20.40 16 2 C 0.05 1.20 5.50 -17.50 -0.10 1.10 16 3 Si 0.93 18.66 29.56 -169.99 -5.02 13.63 16 4 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 5 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 6 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 7 C -0.32 -8.40 10.24 -14.82 -0.15 -8.55 16 8 H 0.12 2.73 7.84 -52.49 -0.41 2.32 16 9 N -0.14 -3.74 3.73 -11.40 -0.04 -3.78 16 10 C -0.08 -1.76 11.50 -16.38 -0.19 -1.95 16 11 C -0.07 -1.62 6.90 -83.92 -0.58 -2.19 16 12 N -0.58 -10.75 5.45 -10.45 -0.06 -10.80 16 13 C 0.48 8.63 7.69 -11.65 -0.09 8.54 16 14 O -0.52 -10.00 10.36 5.45 0.06 -9.94 16 15 C 0.52 8.02 7.74 -11.65 -0.09 7.93 16 16 O -0.53 -8.55 15.94 5.48 0.09 -8.46 16 17 N -0.59 -7.58 2.92 -174.04 -0.51 -8.09 16 18 C 0.11 1.08 6.30 -3.60 -0.02 1.05 16 19 C -0.05 -0.46 6.44 -27.62 -0.18 -0.64 16 20 C -0.24 -2.47 5.93 -104.97 -0.62 -3.10 16 21 C 0.06 0.50 11.94 -17.34 -0.21 0.29 16 22 N -0.48 -4.47 7.37 30.37 0.22 -4.25 16 23 H 0.44 2.54 8.96 -182.42 -1.64 0.90 16 24 N -0.27 -3.65 12.68 33.78 0.43 -3.22 16 25 C 0.07 0.89 7.21 -82.31 -0.59 0.30 16 26 C 0.17 2.20 6.12 -4.49 -0.03 2.18 16 27 C -0.02 -0.62 10.85 -17.02 -0.18 -0.80 16 28 N -0.26 -7.44 10.42 30.81 0.32 -7.12 16 29 H 0.28 6.92 8.31 -40.82 -0.34 6.58 16 30 H 0.15 2.90 8.06 -52.48 -0.42 2.47 16 31 H 0.41 6.55 8.31 -40.82 -0.34 6.21 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.10 0.98 7.04 -51.93 -0.37 0.61 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.18 0.71 8.06 -52.48 -0.42 0.28 16 37 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.16 2.43 4.77 -52.93 -0.25 2.18 16 39 H 0.18 4.36 5.92 -52.49 -0.31 4.05 16 LS Contribution 335.77 15.07 5.06 5.06 Total: -1.00 -34.16 335.77 -6.81 -40.98 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -4.99 Total: 12.24 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: -3.03 Total: 4.15 kcal Atomic # 7 Polarization: -58.69 SS G_CDS: 1.02 Total: -57.66 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: 0.14 Total: -18.40 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.02 Total: 13.63 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.16 -6.81 -40.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116354721.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.157 kcal (2) G-P(sol) polarization free energy of solvation -34.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds