Wall clock time and date at job start Tue Mar 31 2020 05:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37096 * 119.99785 * 2 1 4 4 H 1.08006 * 119.99904 * 203.89228 * 3 2 1 5 5 C 1.38945 * 120.00424 * 23.88694 * 3 2 1 6 6 N 1.31412 * 119.99792 * 13.30941 * 5 3 2 7 7 Si 1.86803 * 120.00384 * 193.30385 * 5 3 2 8 8 H 1.48502 * 109.46603 * 90.00607 * 7 5 3 9 9 H 1.48495 * 109.47347 * 209.99801 * 7 5 3 10 10 H 1.48501 * 109.47092 * 330.00782 * 7 5 3 11 11 C 1.34778 * 120.00020 * 180.02562 * 2 1 3 12 12 O 1.21291 * 119.99636 * 179.97438 * 11 2 1 13 13 C 1.50697 * 119.99898 * 359.97438 * 11 2 1 14 14 H 1.08994 * 110.85781 * 62.33908 * 13 11 2 15 15 C 1.54635 * 110.96921 * 298.54425 * 13 11 2 16 16 C 1.51279 * 104.31191 * 216.98284 * 15 13 11 17 17 O 1.21287 * 124.93980 * 196.27839 * 16 15 13 18 18 N 1.34743 * 109.93811 * 16.31603 * 16 15 13 19 19 C 1.46500 * 124.30149 * 180.39138 * 18 16 15 20 20 H 1.08998 * 109.64076 * 180.66106 * 19 18 16 21 21 C 1.53877 * 109.64776 * 60.22652 * 19 18 16 22 22 C 1.55052 * 106.62363 * 192.96924 * 21 19 18 23 23 S 1.83287 * 102.56437 * 42.43415 * 22 21 19 24 24 O 1.42104 * 109.35370 * 90.18676 * 23 22 21 25 25 O 1.42101 * 109.35127 * 223.38494 * 23 22 21 26 26 C 1.54175 * 109.64266 * 301.08664 * 19 18 16 27 27 C 1.46766 * 111.34912 * 0.35096 * 18 16 15 28 28 H 1.08999 * 109.46768 * 266.70684 * 1 2 3 29 29 H 1.08995 * 109.47040 * 26.70906 * 1 2 3 30 30 H 1.08994 * 109.46658 * 146.71098 * 1 2 3 31 31 H 0.97006 * 120.00428 * 179.97438 * 6 5 3 32 32 H 1.09001 * 110.48776 * 335.72834 * 15 13 11 33 33 H 1.08997 * 110.48303 * 98.23735 * 15 13 11 34 34 H 1.09001 * 110.02651 * 312.26005 * 21 19 18 35 35 H 1.09002 * 110.02655 * 73.67641 * 21 19 18 36 36 H 1.08990 * 110.78669 * 160.70341 * 22 21 19 37 37 H 1.09001 * 110.79001 * 283.97612 * 22 21 19 38 38 H 1.08993 * 110.31354 * 266.66513 * 26 19 18 39 39 H 1.09001 * 110.31607 * 28.86102 * 26 19 18 40 40 H 1.08998 * 110.24548 * 224.01881 * 27 18 16 41 41 H 1.08998 * 110.31625 * 102.05546 * 27 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1611 1.2274 -0.3788 5 6 1.5450 2.3391 0.4872 6 7 0.4326 2.2533 1.1815 7 14 2.3125 4.0096 0.1557 8 1 1.7707 4.5601 -1.1127 9 1 1.9906 4.9329 1.2732 10 1 3.7860 3.8638 0.0426 11 6 2.1389 -1.1672 -0.0005 12 8 3.3518 -1.1671 -0.0010 13 6 1.3854 -2.4723 -0.0005 14 1 0.7815 -2.5717 -0.9024 15 6 0.5117 -2.6068 1.2682 16 6 0.5979 -4.0737 1.6279 17 8 -0.1557 -4.6489 2.3842 18 7 1.6353 -4.6443 0.9845 19 6 2.0014 -6.0581 1.0996 20 1 2.8817 -6.2595 0.4892 21 6 0.8304 -6.9361 0.6246 22 6 1.1490 -8.3841 1.0785 23 16 1.7869 -8.1376 2.7790 24 8 0.7072 -8.2004 3.7007 25 8 2.9350 -8.9520 2.9739 26 6 2.3037 -6.3969 2.5730 27 6 2.3505 -3.6687 0.1534 28 1 -0.3633 -0.0590 1.0260 29 1 -0.3633 0.9180 -0.4619 30 1 -0.3632 -0.8590 -0.5640 31 1 0.0100 3.0573 1.5220 32 1 0.9124 -1.9922 2.0743 33 1 -0.5194 -2.3268 1.0527 34 1 -0.0994 -6.5976 1.0818 35 1 0.7494 -6.8947 -0.4617 36 1 0.2456 -8.9938 1.0887 37 1 1.9089 -8.8319 0.4382 38 1 3.3701 -6.2943 2.7737 39 1 1.7289 -5.7500 3.2357 40 1 2.5769 -4.0985 -0.8223 41 1 3.2687 -3.3515 0.6476 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318128486.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:13 Heat of formation + Delta-G solvation = -117.153487 kcal Electronic energy + Delta-G solvation = -26973.257025 eV Core-core repulsion = 22981.382859 eV Total energy + Delta-G solvation = -3991.874166 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.113 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -40.80349 -38.60316 -37.25965 -36.79415 -36.21591 -35.70735 -34.77471 -32.15753 -31.29092 -29.50248 -27.53266 -26.48034 -25.49364 -24.76045 -22.44732 -22.38346 -19.27376 -19.10801 -18.80086 -17.38738 -17.17382 -16.98772 -16.79706 -16.17910 -15.83520 -15.45570 -15.10896 -14.52761 -14.48519 -14.45905 -14.09615 -13.95818 -13.70816 -13.31205 -13.02324 -12.81334 -12.56852 -12.49743 -12.38073 -12.24180 -12.17651 -11.82503 -11.80869 -11.57308 -11.37489 -11.12074 -11.03695 -10.97204 -10.91808 -10.63201 -10.42835 -10.38170 -9.72874 -9.12656 -8.85428 -8.55493 -7.81918 -6.45278 -4.01825 -0.23615 2.19621 2.55245 2.81650 3.07954 3.18977 3.23367 3.31313 3.65221 3.75878 3.94882 4.03598 4.18516 4.26905 4.43066 4.53149 4.54286 4.58444 4.83285 4.99983 5.11300 5.11858 5.16732 5.28489 5.31584 5.47033 5.59661 5.66217 5.72392 5.80137 6.00519 6.17254 6.25153 6.42367 6.70750 6.97234 7.06981 7.45269 7.98833 8.12507 8.32848 9.03604 9.26763 9.79960 10.59247 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.031971 B = 0.002716 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.586570 B =10306.788973 C =10504.040841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.436 5.436 3 C -0.311 4.311 4 H 0.100 0.900 5 C 0.033 3.967 6 N -0.877 5.877 7 Si 0.927 3.073 8 H -0.277 1.277 9 H -0.283 1.283 10 H -0.269 1.269 11 C 0.451 3.549 12 O -0.587 6.587 13 C -0.110 4.110 14 H 0.102 0.898 15 C -0.143 4.143 16 C 0.521 3.479 17 O -0.529 6.529 18 N -0.615 5.615 19 C 0.171 3.829 20 H 0.113 0.887 21 C -0.138 4.138 22 C -0.584 4.584 23 S 2.396 3.604 24 O -0.928 6.928 25 O -0.941 6.941 26 C -0.615 4.615 27 C 0.120 3.880 28 H 0.057 0.943 29 H 0.074 0.926 30 H 0.027 0.973 31 H 0.270 0.730 32 H 0.113 0.887 33 H 0.109 0.891 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.143 0.857 39 H 0.150 0.850 40 H 0.081 0.919 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.095 -16.067 -3.739 16.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.153 5.153 3 C -0.439 4.439 4 H 0.118 0.882 5 C -0.171 4.171 6 N -0.516 5.516 7 Si 0.753 3.247 8 H -0.203 1.203 9 H -0.209 1.209 10 H -0.193 1.193 11 C 0.238 3.762 12 O -0.472 6.472 13 C -0.132 4.132 14 H 0.120 0.880 15 C -0.183 4.183 16 C 0.310 3.690 17 O -0.405 6.405 18 N -0.349 5.349 19 C 0.066 3.934 20 H 0.131 0.869 21 C -0.178 4.178 22 C -0.714 4.714 23 S 2.578 3.422 24 O -0.925 6.925 25 O -0.938 6.938 26 C -0.744 4.744 27 C -0.002 4.002 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.046 0.954 31 H 0.080 0.920 32 H 0.131 0.869 33 H 0.128 0.872 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.158 0.842 37 H 0.157 0.843 38 H 0.162 0.838 39 H 0.168 0.832 40 H 0.099 0.901 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.973 -16.866 -2.449 17.071 hybrid contribution 0.106 1.563 -0.793 1.756 sum -0.868 -15.303 -3.242 15.667 Atomic orbital electron populations 1.21616 0.81157 0.99888 1.01019 1.43522 1.05513 1.04644 1.61656 1.19663 1.00468 0.83869 1.39892 0.88242 1.25359 0.96556 1.00232 0.94929 1.69981 1.19098 1.29844 1.32643 0.85915 0.79684 0.81125 0.77942 1.20301 1.20891 1.19298 1.19479 0.87730 0.84192 0.84768 1.90530 1.13640 1.86695 1.56350 1.22072 0.97139 0.95116 0.98922 0.88025 1.22451 1.03043 0.93484 0.99367 1.21194 0.79191 0.89763 0.78836 1.90718 1.44207 1.69636 1.35986 1.48437 1.31112 1.07803 1.47583 1.21190 0.98223 0.81487 0.92479 0.86917 1.22649 1.00553 0.89622 1.04937 1.30570 1.13335 1.04241 1.23301 1.08852 0.76107 0.78406 0.78833 1.93648 1.54117 1.85769 1.58947 1.93615 1.49959 1.65040 1.85147 1.30997 1.13050 1.24829 1.05571 1.22071 0.95953 0.86982 0.95242 0.92453 0.90733 0.95443 0.92032 0.86932 0.87237 0.87885 0.87959 0.84164 0.84268 0.83835 0.83155 0.90105 0.88741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.13 7.23 59.85 0.43 2.56 16 2 N -0.44 -10.07 3.01 -122.20 -0.37 -10.43 16 3 C -0.31 -8.07 9.25 -14.94 -0.14 -8.21 16 4 H 0.10 2.71 7.44 -52.48 -0.39 2.32 16 5 C 0.03 0.83 5.03 -17.47 -0.09 0.74 16 6 N -0.88 -22.05 10.84 55.50 0.60 -21.45 16 7 Si 0.93 19.70 29.57 -169.99 -5.03 14.67 16 8 H -0.28 -5.77 7.11 56.52 0.40 -5.36 16 9 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 10 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 11 C 0.45 9.57 6.95 -10.99 -0.08 9.49 16 12 O -0.59 -14.40 15.28 5.55 0.08 -14.31 16 13 C -0.11 -1.67 2.58 -90.14 -0.23 -1.90 16 14 H 0.10 1.32 7.57 -51.93 -0.39 0.92 16 15 C -0.14 -2.13 4.97 -26.74 -0.13 -2.26 16 16 C 0.52 7.58 7.13 -10.72 -0.08 7.50 16 17 O -0.53 -8.91 15.25 5.55 0.08 -8.83 16 18 N -0.61 -7.36 2.86 -163.53 -0.47 -7.83 16 19 C 0.17 1.54 3.18 -66.86 -0.21 1.33 16 20 H 0.11 0.68 8.07 -51.93 -0.42 0.26 16 21 C -0.14 -1.08 5.91 -25.19 -0.15 -1.23 16 22 C -0.58 -3.57 7.31 38.24 0.28 -3.29 16 23 S 2.40 22.87 6.10 -107.50 -0.66 22.22 16 24 O -0.93 -12.91 18.14 -57.71 -1.05 -13.96 16 25 O -0.94 -11.39 18.15 -57.71 -1.05 -12.44 16 26 C -0.61 -5.84 6.73 37.77 0.25 -5.58 16 27 C 0.12 1.54 6.62 -3.12 -0.02 1.52 16 28 H 0.06 1.17 7.33 -51.93 -0.38 0.79 16 29 H 0.07 1.61 6.84 -51.93 -0.36 1.25 16 30 H 0.03 0.43 6.23 -51.93 -0.32 0.11 16 31 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 32 H 0.11 1.90 7.89 -51.93 -0.41 1.49 16 33 H 0.11 1.49 7.10 -51.93 -0.37 1.13 16 34 H 0.10 1.03 6.60 -51.93 -0.34 0.69 16 35 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.14 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.14 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.14 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.15 1.78 6.44 -51.93 -0.33 1.45 16 40 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.09 1.41 7.06 -51.93 -0.37 1.04 16 LS Contribution 341.00 15.07 5.14 5.14 Total: -1.00 -35.46 341.00 -8.20 -43.65 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -5.33 Total: 2.89 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: -0.16 Total: 0.68 kcal Atomic # 7 Polarization: -39.47 SS G_CDS: -0.23 Total: -39.70 kcal Atomic # 8 Polarization: -47.61 SS G_CDS: -1.92 Total: -49.54 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.03 Total: 14.67 kcal Atomic # 16 Polarization: 22.87 SS G_CDS: -0.66 Total: 22.22 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -35.46 -8.20 -43.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318128486.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.502 kcal (2) G-P(sol) polarization free energy of solvation -35.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds