Wall clock time and date at job start Tue Mar 31 2020 05:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.37098 * 119.99630 * 2 1 4 4 H 1.08002 * 119.99870 * 201.89578 * 3 2 1 5 5 C 1.38941 * 120.00441 * 21.89389 * 3 2 1 6 6 N 1.31418 * 119.99957 * 13.26780 * 5 3 2 7 7 Si 1.86798 * 120.00512 * 193.26965 * 5 3 2 8 8 H 1.48497 * 109.47341 * 59.99629 * 7 5 3 9 9 H 1.48500 * 109.47244 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46989 * 299.99960 * 7 5 3 11 11 C 1.34772 * 120.00325 * 179.97438 * 2 1 3 12 12 O 1.21297 * 119.99999 * 179.97438 * 11 2 1 13 13 C 1.50703 * 120.00167 * 359.97438 * 11 2 1 14 14 H 1.08999 * 110.88748 * 303.81767 * 13 11 2 15 15 C 1.54632 * 110.96632 * 67.62016 * 13 11 2 16 16 C 1.51288 * 104.19320 * 93.32170 * 15 13 11 17 17 O 1.21287 * 124.94019 * 196.21545 * 16 15 13 18 18 N 1.34418 * 110.11491 * 16.25440 * 16 15 13 19 19 C 1.46497 * 124.34546 * 180.38418 * 18 16 15 20 20 H 1.09004 * 110.01333 * 178.64388 * 19 18 16 21 21 C 1.53876 * 110.02672 * 57.21675 * 19 18 16 22 22 C 1.54172 * 108.70292 * 193.52293 * 21 19 18 23 23 S 1.82917 * 105.08356 * 27.91109 * 22 21 19 24 24 O 1.42103 * 109.35361 * 244.47341 * 23 22 21 25 25 O 1.42101 * 109.35740 * 111.27511 * 23 22 21 26 26 C 1.55045 * 110.03328 * 300.02228 * 19 18 16 27 27 C 1.46757 * 111.30231 * 0.40580 * 18 16 15 28 28 H 1.08999 * 109.47091 * 274.53266 * 1 2 3 29 29 H 1.08995 * 109.47554 * 34.53707 * 1 2 3 30 30 H 1.09004 * 109.46899 * 154.54057 * 1 2 3 31 31 H 0.97000 * 120.00223 * 179.97438 * 6 5 3 32 32 H 1.08996 * 110.48724 * 211.99813 * 15 13 11 33 33 H 1.08997 * 110.48796 * 334.64666 * 15 13 11 34 34 H 1.08997 * 109.64908 * 313.37237 * 21 19 18 35 35 H 1.08998 * 109.65234 * 73.67774 * 21 19 18 36 36 H 1.08990 * 110.32098 * 269.00645 * 22 21 19 37 37 H 1.09006 * 110.40090 * 146.85121 * 22 21 19 38 38 H 1.08999 * 110.79043 * 280.00133 * 26 19 18 39 39 H 1.09006 * 110.78431 * 43.45291 * 26 19 18 40 40 H 1.08999 * 110.24348 * 223.98913 * 27 18 16 41 41 H 1.08997 * 110.32234 * 102.02109 * 27 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1874 0.0000 4 1 3.1720 1.2211 -0.3488 5 6 1.5309 2.3472 0.4487 6 7 0.3975 2.2733 1.1098 7 14 2.3088 4.0119 0.1122 8 1 2.4303 4.2142 -1.3539 9 1 1.4576 5.0822 0.6913 10 1 3.6571 4.0625 0.7323 11 6 2.1389 -1.1671 0.0005 12 8 3.3519 -1.1671 0.0001 13 6 1.3855 -2.4723 0.0017 14 1 0.7007 -2.5250 0.8481 15 6 0.6322 -2.6776 -1.3331 16 6 1.5943 -3.4785 -2.1826 17 8 1.5123 -3.6137 -3.3851 18 7 2.5526 -4.0194 -1.4106 19 6 3.6498 -4.8490 -1.9147 20 1 4.3029 -5.1432 -1.0931 21 6 4.4516 -4.0746 -2.9754 22 6 5.3665 -5.0646 -3.7237 23 16 4.5043 -6.6750 -3.6280 24 8 5.2883 -7.5845 -2.8681 25 8 4.0468 -7.0419 -4.9224 26 6 3.0829 -6.1084 -2.6192 27 6 2.3583 -3.6723 0.0020 28 1 -0.3633 0.0812 1.0244 29 1 -0.3634 0.8465 -0.5826 30 1 -0.3633 -0.9279 -0.4418 31 1 -0.0349 3.0830 1.4233 32 1 -0.2887 -3.2370 -1.1692 33 1 0.4181 -1.7171 -1.8019 34 1 3.7671 -3.6035 -3.6807 35 1 5.0584 -3.3101 -2.4903 36 1 6.3384 -5.1259 -3.2341 37 1 5.4856 -4.7602 -4.7636 38 1 2.8004 -6.8663 -1.8886 39 1 2.2365 -5.8480 -3.2550 40 1 3.3082 -3.3876 0.4545 41 1 1.9208 -4.5123 0.5415 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318128488.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:22 Heat of formation + Delta-G solvation = -113.930386 kcal Electronic energy + Delta-G solvation = -27279.979349 eV Core-core repulsion = 23288.244947 eV Total energy + Delta-G solvation = -3991.734402 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.113 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -40.82798 -38.50872 -37.25418 -36.66439 -36.19770 -35.67537 -34.72224 -32.16653 -31.24508 -29.44659 -27.53681 -26.47977 -25.38597 -24.76471 -22.41300 -22.31411 -19.26164 -19.09079 -18.92685 -17.35859 -17.12272 -16.97182 -16.61862 -16.09838 -15.74167 -15.41116 -15.03791 -14.66643 -14.54106 -14.26725 -14.16764 -14.02508 -13.56128 -13.24856 -12.87982 -12.79528 -12.50649 -12.40256 -12.37318 -12.23056 -12.09649 -11.87615 -11.57934 -11.41127 -11.33902 -11.20534 -11.08818 -10.96714 -10.87526 -10.58285 -10.48356 -10.36028 -9.56710 -9.14151 -8.76064 -8.55677 -7.82081 -6.42885 -3.99691 -0.19432 2.23448 2.59391 2.95442 3.10516 3.18199 3.21617 3.36060 3.64932 3.77881 4.01234 4.12761 4.26460 4.43947 4.48378 4.55524 4.62060 4.66863 4.75898 4.99769 5.11083 5.13260 5.34130 5.37651 5.46810 5.52863 5.61751 5.74286 5.81087 5.90847 5.97676 6.04660 6.19668 6.50155 6.73948 7.08053 7.11089 7.45701 7.98554 8.19366 8.34055 9.05182 9.28783 9.81730 10.59850 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.025001 B = 0.003068 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.669775 B = 9124.718528 C = 9505.308626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.437 5.437 3 C -0.310 4.310 4 H 0.099 0.901 5 C 0.033 3.967 6 N -0.879 5.879 7 Si 0.927 3.073 8 H -0.273 1.273 9 H -0.283 1.283 10 H -0.272 1.272 11 C 0.447 3.553 12 O -0.586 6.586 13 C -0.114 4.114 14 H 0.112 0.888 15 C -0.149 4.149 16 C 0.525 3.475 17 O -0.534 6.534 18 N -0.600 5.600 19 C 0.168 3.832 20 H 0.114 0.886 21 C -0.136 4.136 22 C -0.583 4.583 23 S 2.394 3.606 24 O -0.938 6.938 25 O -0.936 6.936 26 C -0.609 4.609 27 C 0.117 3.883 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.035 0.965 31 H 0.269 0.731 32 H 0.109 0.891 33 H 0.113 0.887 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.138 0.862 37 H 0.141 0.859 38 H 0.140 0.860 39 H 0.150 0.850 40 H 0.100 0.900 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.306 -13.202 -2.911 13.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.154 5.154 3 C -0.438 4.438 4 H 0.117 0.883 5 C -0.170 4.170 6 N -0.518 5.518 7 Si 0.753 3.247 8 H -0.199 1.199 9 H -0.209 1.209 10 H -0.197 1.197 11 C 0.234 3.766 12 O -0.471 6.471 13 C -0.136 4.136 14 H 0.130 0.870 15 C -0.189 4.189 16 C 0.314 3.686 17 O -0.412 6.412 18 N -0.333 5.333 19 C 0.063 3.937 20 H 0.132 0.868 21 C -0.175 4.175 22 C -0.714 4.714 23 S 2.576 3.424 24 O -0.935 6.935 25 O -0.933 6.933 26 C -0.739 4.739 27 C -0.005 4.005 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.054 0.946 31 H 0.079 0.921 32 H 0.127 0.873 33 H 0.131 0.869 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.157 0.843 37 H 0.159 0.841 38 H 0.158 0.842 39 H 0.168 0.832 40 H 0.118 0.882 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.978 -14.033 -3.844 14.683 hybrid contribution -0.150 1.794 0.426 1.850 sum 1.828 -12.238 -3.417 12.837 Atomic orbital electron populations 1.21727 0.81096 0.98953 1.02482 1.43517 1.05556 1.04669 1.61704 1.19604 0.99318 0.83609 1.41227 0.88350 1.25330 0.96461 1.00110 0.95133 1.69981 1.17849 1.29540 1.34448 0.85991 0.79034 0.80775 0.78893 1.19856 1.20873 1.19743 1.19572 0.87860 0.84323 0.84824 1.90512 1.13655 1.86629 1.56284 1.22236 0.97716 0.95041 0.98598 0.87012 1.22524 0.98391 1.02495 0.95533 1.20950 0.81877 0.78515 0.87265 1.90668 1.75199 1.61986 1.13336 1.48022 1.25881 1.50361 1.09015 1.21417 0.87895 0.87339 0.97070 0.86781 1.22338 0.98016 0.98719 0.98411 1.30402 1.11267 1.19450 1.10235 1.08868 0.78702 0.78381 0.76404 1.93621 1.67730 1.59914 1.72283 1.93620 1.80606 1.81792 1.37294 1.31123 1.19546 1.07995 1.15212 1.22098 1.01915 0.95677 0.80857 0.91839 0.91555 0.94633 0.92064 0.87307 0.86910 0.87984 0.87907 0.84323 0.84102 0.84167 0.83166 0.88193 0.90762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.02 8.12 59.85 0.49 2.50 16 2 N -0.44 -10.19 3.01 -122.20 -0.37 -10.56 16 3 C -0.31 -8.14 9.29 -14.94 -0.14 -8.28 16 4 H 0.10 2.73 7.40 -52.49 -0.39 2.34 16 5 C 0.03 0.84 5.09 -17.47 -0.09 0.75 16 6 N -0.88 -22.13 10.66 55.50 0.59 -21.54 16 7 Si 0.93 19.92 29.57 -169.99 -5.03 14.89 16 8 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 9 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 10 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 11 C 0.45 9.53 6.95 -10.99 -0.08 9.46 16 12 O -0.59 -14.36 15.22 5.54 0.08 -14.27 16 13 C -0.11 -1.69 2.58 -90.14 -0.23 -1.92 16 14 H 0.11 1.41 8.05 -51.93 -0.42 0.99 16 15 C -0.15 -2.06 5.08 -26.74 -0.14 -2.20 16 16 C 0.53 8.04 7.30 -10.86 -0.08 7.96 16 17 O -0.53 -9.39 14.95 5.55 0.08 -9.30 16 18 N -0.60 -7.92 2.89 -163.11 -0.47 -8.39 16 19 C 0.17 1.82 3.21 -66.40 -0.21 1.61 16 20 H 0.11 0.94 8.09 -51.93 -0.42 0.52 16 21 C -0.14 -1.52 5.84 -25.66 -0.15 -1.67 16 22 C -0.58 -4.88 7.26 37.77 0.27 -4.60 16 23 S 2.39 23.67 6.11 -107.50 -0.66 23.01 16 24 O -0.94 -11.55 18.15 -57.71 -1.05 -12.60 16 25 O -0.94 -12.75 18.15 -57.71 -1.05 -13.80 16 26 C -0.61 -5.80 6.76 38.24 0.26 -5.54 16 27 C 0.12 1.48 6.64 -3.13 -0.02 1.46 16 28 H 0.06 1.33 7.41 -51.93 -0.38 0.95 16 29 H 0.07 1.43 7.24 -51.93 -0.38 1.05 16 30 H 0.04 0.56 4.48 -51.93 -0.23 0.32 16 31 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 32 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.11 1.75 6.36 -51.93 -0.33 1.42 16 34 H 0.10 1.37 6.35 -51.93 -0.33 1.04 16 35 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.14 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.14 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.14 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.15 1.67 6.63 -51.93 -0.34 1.32 16 40 H 0.10 1.41 7.02 -51.93 -0.36 1.04 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 340.32 15.07 5.13 5.13 Total: -1.00 -35.74 340.32 -8.11 -43.85 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -5.26 Total: 4.04 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -0.12 Total: -0.46 kcal Atomic # 7 Polarization: -40.24 SS G_CDS: -0.25 Total: -40.49 kcal Atomic # 8 Polarization: -48.05 SS G_CDS: -1.93 Total: -49.97 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.03 Total: 14.89 kcal Atomic # 16 Polarization: 23.67 SS G_CDS: -0.66 Total: 23.01 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -35.74 -8.11 -43.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318128488.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.080 kcal (2) G-P(sol) polarization free energy of solvation -35.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds