Wall clock time and date at job start Tue Mar 31 2020 06:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31284 * 1 3 3 Si 1.86805 * 119.99955 * 2 1 4 4 H 1.48496 * 109.47543 * 274.97160 * 3 2 1 5 5 H 1.48507 * 109.46692 * 34.97326 * 3 2 1 6 6 H 1.48501 * 109.46830 * 154.96520 * 3 2 1 7 7 C 1.38999 * 120.00184 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00332 * 173.31611 * 7 2 1 9 9 N 1.37299 * 119.99864 * 353.31271 * 7 2 1 10 10 C 1.36448 * 126.05390 * 186.55620 * 9 7 2 11 11 C 1.35787 * 107.49640 * 180.02562 * 10 9 7 12 12 N 1.40286 * 126.09742 * 179.97438 * 11 10 9 13 13 C 1.34775 * 119.99949 * 179.97438 * 12 11 10 14 14 O 1.21412 * 119.99926 * 0.02562 * 13 12 11 15 15 C 1.49312 * 120.00415 * 180.02562 * 13 12 11 16 16 O 1.21367 * 119.99634 * 353.77470 * 15 13 12 17 17 N 1.34773 * 120.00324 * 173.77934 * 15 13 12 18 18 C 1.47047 * 120.95271 * 173.05245 * 17 15 13 19 19 C 1.53288 * 109.39380 * 115.94472 * 18 17 15 20 20 N 1.46431 * 109.21448 * 46.01402 * 19 18 17 21 21 C 1.34504 * 128.20796 * 161.74180 * 20 19 18 22 22 N 1.30769 * 108.60670 * 179.56820 * 21 20 19 23 23 C 1.34686 * 109.29930 * 0.25617 * 22 21 20 24 24 C 1.33750 * 107.72969 * 359.90267 * 23 22 21 25 25 C 1.47556 * 120.94985 * 353.07230 * 17 15 13 26 26 C 1.40723 * 107.80136 * 0.22451 * 11 10 9 27 27 N 1.30883 * 108.37418 * 359.61780 * 26 11 10 28 28 H 0.97002 * 119.99811 * 359.97438 * 1 2 3 29 29 H 1.08001 * 126.25136 * 0.02562 * 10 9 7 30 30 H 0.97000 * 120.00622 * 0.02562 * 12 11 10 31 31 H 1.09001 * 109.48162 * 355.97446 * 18 17 15 32 32 H 1.09001 * 109.50104 * 235.93483 * 18 17 15 33 33 H 1.09001 * 109.52426 * 165.94737 * 19 18 17 34 34 H 1.08995 * 109.52531 * 286.07826 * 19 18 17 35 35 H 1.08005 * 125.69785 * 359.57008 * 21 20 19 36 36 H 1.08000 * 126.14468 * 180.02562 * 23 22 21 37 37 H 1.09003 * 109.97510 * 342.52585 * 25 17 15 38 38 H 1.08999 * 109.97708 * 103.85384 * 25 17 15 39 39 H 1.07993 * 125.81460 * 179.74134 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3128 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 2.3893 2.1072 -1.3947 5 1 1.5007 2.6201 0.8026 6 1 3.5929 1.4121 0.5925 7 6 2.0079 -1.2037 -0.0005 8 1 3.0825 -1.2069 -0.1094 9 7 1.3284 -2.3888 0.1374 10 6 1.8895 -3.6245 0.2791 11 6 0.8770 -4.5231 0.3840 12 7 1.0159 -5.9099 0.5431 13 6 -0.0789 -6.6907 0.6351 14 8 -1.1852 -6.1938 0.5797 15 6 0.0689 -8.1667 0.8050 16 8 1.1685 -8.6771 0.7473 17 7 -1.0188 -8.9322 1.0225 18 6 -0.9195 -10.3992 1.0421 19 6 -1.2734 -10.9148 2.4416 20 7 -2.4875 -10.2431 2.9098 21 6 -3.3172 -10.6190 3.8995 22 7 -4.2754 -9.7347 3.9991 23 6 -4.0909 -8.7724 3.0750 24 6 -2.9837 -9.0743 2.3880 25 6 -2.3434 -8.3223 1.2474 26 6 -0.3365 -3.8157 0.2986 27 7 -0.0635 -2.5435 0.1570 28 1 -0.4850 0.8401 0.0004 29 1 2.9461 -3.8471 0.3035 30 1 1.8998 -6.3070 0.5878 31 1 0.0983 -10.6981 0.7912 32 1 -1.6122 -10.8205 0.3135 33 1 -1.4449 -11.9904 2.4010 34 1 -0.4526 -10.7023 3.1264 35 1 -3.2099 -11.5035 4.5100 36 1 -4.7223 -7.9104 2.9182 37 1 -2.2292 -7.2711 1.5122 38 1 -2.9543 -8.4170 0.3496 39 1 -1.3249 -4.2485 0.3445 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323949231.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:56 Heat of formation + Delta-G solvation = 111.935054 kcal Electronic energy + Delta-G solvation = -27282.077903 eV Core-core repulsion = 23229.279313 eV Total energy + Delta-G solvation = -4052.798590 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.123 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.49595 -40.73489 -39.63571 -38.17539 -36.82855 -34.66067 -33.79376 -33.22159 -31.17050 -30.39755 -29.53057 -28.12867 -26.16584 -25.61394 -24.67022 -22.93427 -21.77980 -21.11397 -20.36877 -19.60552 -19.27716 -17.89642 -17.66483 -17.32040 -16.55192 -16.38530 -15.89932 -15.58042 -15.21319 -15.14974 -14.60075 -14.30833 -14.16534 -14.01047 -13.70768 -13.45031 -13.32585 -13.21153 -13.03540 -12.79603 -12.55439 -12.08226 -11.78689 -11.55609 -11.32309 -11.27311 -10.96700 -10.58251 -10.38129 -10.19185 -9.73939 -9.33081 -9.27840 -9.16235 -8.93904 -8.43307 -8.19451 -6.86612 -6.66425 -4.33610 1.41939 1.84848 2.06427 2.60352 2.88129 3.00297 3.01207 3.06405 3.15900 3.46693 3.60798 3.78164 4.04098 4.26979 4.28286 4.38473 4.49921 4.55208 4.60111 4.85378 4.91879 5.02098 5.10814 5.13082 5.37171 5.53078 5.64639 5.91321 6.08008 6.13284 6.27617 6.54349 6.64110 6.78000 6.82811 6.89016 6.98922 7.10107 7.47734 7.74629 7.87936 7.94986 8.10347 8.35859 8.61151 9.24631 9.52935 10.29567 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.024428 B = 0.002505 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.943860 B =11173.887082 C =11999.479433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.047 3.953 3 Si 0.935 3.065 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.263 1.263 7 C -0.322 4.322 8 H 0.119 0.881 9 N -0.137 5.137 10 C -0.076 4.076 11 C -0.074 4.074 12 N -0.576 5.576 13 C 0.484 3.516 14 O -0.515 6.515 15 C 0.523 3.477 16 O -0.524 6.524 17 N -0.597 5.597 18 C 0.098 3.902 19 C 0.090 3.910 20 N -0.459 5.459 21 C 0.184 3.816 22 N -0.494 5.494 23 C -0.013 4.013 24 C -0.038 4.038 25 C 0.166 3.834 26 C -0.023 4.023 27 N -0.261 5.261 28 H 0.277 0.723 29 H 0.149 0.851 30 H 0.409 0.591 31 H 0.116 0.884 32 H 0.086 0.914 33 H 0.104 0.896 34 H 0.089 0.911 35 H 0.204 0.796 36 H 0.175 0.825 37 H 0.154 0.846 38 H 0.092 0.908 39 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.972 -19.108 2.743 19.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C -0.171 4.171 3 Si 0.759 3.241 4 H -0.196 1.196 5 H -0.199 1.199 6 H -0.187 1.187 7 C -0.455 4.455 8 H 0.136 0.864 9 N 0.097 4.903 10 C -0.228 4.228 11 C -0.179 4.179 12 N -0.218 5.218 13 C 0.265 3.735 14 O -0.394 6.394 15 C 0.307 3.693 16 O -0.399 6.399 17 N -0.331 5.331 18 C -0.025 4.025 19 C -0.033 4.033 20 N -0.144 5.144 21 C -0.098 4.098 22 N -0.213 5.213 23 C -0.160 4.160 24 C -0.152 4.152 25 C 0.044 3.956 26 C -0.199 4.199 27 N -0.092 5.092 28 H 0.087 0.913 29 H 0.167 0.833 30 H 0.245 0.755 31 H 0.134 0.866 32 H 0.104 0.896 33 H 0.122 0.878 34 H 0.108 0.892 35 H 0.221 0.779 36 H 0.192 0.808 37 H 0.171 0.829 38 H 0.110 0.890 39 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -2.339 -17.789 3.055 18.200 hybrid contribution 1.896 -0.613 -0.368 2.027 sum -0.442 -18.402 2.687 18.602 Atomic orbital electron populations 1.70207 1.06219 1.28263 1.34414 1.25672 0.95716 1.00396 0.95286 0.85799 0.79557 0.79834 0.78929 1.19569 1.19942 1.18662 1.19934 0.92399 0.80631 1.52501 0.86394 1.44580 1.04064 1.03889 1.37765 1.21311 0.96979 0.85753 1.18723 1.17236 0.94721 0.80958 1.25024 1.42136 1.08509 1.05503 1.65633 1.19465 0.85399 0.86477 0.82133 1.90498 1.24520 1.73904 1.50497 1.20346 0.83833 0.88375 0.76755 1.90734 1.24860 1.74780 1.49569 1.47968 1.09057 1.05994 1.70126 1.21903 1.05283 0.80044 0.95271 1.22323 0.85844 0.98012 0.97125 1.45362 1.21333 1.19710 1.27981 1.24852 0.89168 1.01855 0.93972 1.70615 1.23928 1.03790 1.22941 1.21899 0.97732 1.00665 0.95706 1.21598 0.99565 0.91206 1.02868 1.21374 0.80312 0.99922 0.94032 1.24156 0.97841 0.90962 1.06919 1.78274 0.90283 1.14970 1.25637 0.91273 0.83331 0.75549 0.86556 0.89561 0.87799 0.89233 0.77913 0.80791 0.82927 0.88998 0.80438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -20.65 11.84 55.50 0.66 -19.99 16 2 C 0.05 1.18 5.50 -17.50 -0.10 1.08 16 3 Si 0.94 18.31 29.56 -169.99 -5.02 13.29 16 4 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 5 H -0.27 -5.36 7.11 56.52 0.40 -4.95 16 6 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 7 C -0.32 -8.23 10.24 -14.82 -0.15 -8.38 16 8 H 0.12 2.69 7.84 -52.48 -0.41 2.27 16 9 N -0.14 -3.61 3.73 -11.40 -0.04 -3.65 16 10 C -0.08 -1.72 11.50 -16.38 -0.19 -1.91 16 11 C -0.07 -1.62 6.90 -83.93 -0.58 -2.20 16 12 N -0.58 -10.20 5.45 -10.45 -0.06 -10.25 16 13 C 0.48 8.10 7.70 -11.65 -0.09 8.01 16 14 O -0.52 -9.34 10.39 5.44 0.06 -9.28 16 15 C 0.52 7.37 7.75 -11.65 -0.09 7.28 16 16 O -0.52 -7.85 15.96 5.48 0.09 -7.76 16 17 N -0.60 -6.85 2.97 -174.03 -0.52 -7.36 16 18 C 0.10 0.77 6.38 -3.59 -0.02 0.75 16 19 C 0.09 0.60 7.16 -3.93 -0.03 0.57 16 20 N -0.46 -4.49 3.13 -114.03 -0.36 -4.85 16 21 C 0.18 1.84 12.65 -90.64 -1.15 0.69 16 22 N -0.49 -6.48 11.28 -14.82 -0.17 -6.64 16 23 C -0.01 -0.16 11.85 -17.87 -0.21 -0.37 16 24 C -0.04 -0.44 6.70 -81.64 -0.55 -0.99 16 25 C 0.17 1.92 6.07 -4.53 -0.03 1.89 16 26 C -0.02 -0.57 10.85 -17.02 -0.18 -0.75 16 27 N -0.26 -7.26 10.42 30.81 0.32 -6.94 16 28 H 0.28 6.81 8.31 -40.82 -0.34 6.47 16 29 H 0.15 2.81 8.06 -52.49 -0.42 2.39 16 30 H 0.41 6.22 8.31 -40.82 -0.34 5.88 16 31 H 0.12 0.88 7.05 -51.93 -0.37 0.52 16 32 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.20 1.21 8.06 -52.48 -0.42 0.78 16 36 H 0.17 1.90 8.06 -52.49 -0.42 1.47 16 37 H 0.15 2.10 4.92 -52.35 -0.26 1.84 16 38 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.18 4.19 5.92 -52.49 -0.31 3.88 16 LS Contribution 336.37 15.07 5.07 5.07 Total: -1.00 -33.59 336.37 -7.12 -40.71 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -3.78 Total: 12.00 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: -3.36 Total: 5.66 kcal Atomic # 7 Polarization: -59.53 SS G_CDS: -0.16 Total: -59.69 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: 0.14 Total: -17.04 kcal Atomic # 14 Polarization: 18.31 SS G_CDS: -5.02 Total: 13.29 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.59 -7.12 -40.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323949231.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.641 kcal (2) G-P(sol) polarization free energy of solvation -33.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds