Wall clock time and date at job start Tue Mar 31 2020 05:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86799 * 119.99821 * 2 1 4 4 H 1.48501 * 109.47041 * 239.99700 * 3 2 1 5 5 H 1.48500 * 109.47289 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47105 * 120.00148 * 3 2 1 7 7 C 1.38949 * 119.99891 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99610 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00130 * 0.02562 * 7 2 1 10 10 C 1.34781 * 119.99809 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00171 * 0.02562 * 10 9 7 12 12 C 1.50695 * 119.99810 * 179.97438 * 10 9 7 13 13 N 1.46506 * 109.47348 * 180.02562 * 12 10 9 14 14 C 1.34770 * 120.00006 * 180.02562 * 13 12 10 15 15 O 1.21362 * 120.00639 * 359.97438 * 14 13 12 16 16 C 1.49326 * 119.99862 * 179.97438 * 14 13 12 17 17 O 1.21393 * 119.99903 * 359.97438 * 16 14 13 18 18 N 1.34781 * 120.00252 * 180.02562 * 16 14 13 19 19 C 1.39760 * 119.99893 * 174.36002 * 18 16 14 20 20 C 1.38477 * 120.18773 * 335.14119 * 19 18 16 21 21 C 1.38687 * 120.57686 * 179.97438 * 20 19 18 22 22 C 1.36673 * 120.60355 * 359.97438 * 21 20 19 23 23 C 1.39734 * 119.91162 * 0.02562 * 22 21 20 24 24 C 1.46493 * 133.98298 * 179.97438 * 23 22 21 25 25 C 1.34256 * 107.00237 * 180.02562 * 24 23 22 26 26 N 1.36774 * 109.90895 * 359.97438 * 25 24 23 27 27 H 0.96993 * 125.07113 * 180.02562 * 26 25 24 28 28 C 1.37739 * 109.85848 * 359.75975 * 26 25 24 29 29 H 0.97000 * 120.00042 * 0.02562 * 1 2 3 30 30 H 0.96999 * 119.99806 * 359.97438 * 9 7 2 31 31 H 1.09003 * 109.46955 * 60.00279 * 12 10 9 32 32 H 1.09002 * 109.47860 * 300.00144 * 12 10 9 33 33 H 0.97000 * 119.99586 * 0.02562 * 13 12 10 34 34 H 0.96998 * 119.99844 * 354.63006 * 18 16 14 35 35 H 1.08008 * 119.71082 * 359.97438 * 20 19 18 36 36 H 1.08007 * 119.69890 * 180.02562 * 21 20 19 37 37 H 1.08003 * 120.04278 * 179.97438 * 22 21 20 38 38 H 1.08000 * 126.49517 * 0.05964 * 24 23 22 39 39 H 1.07995 * 125.04798 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0010 12 6 1.2439 -4.8629 0.0011 13 7 2.1959 -5.9765 0.0016 14 6 1.7466 -7.2471 0.0017 15 8 0.5534 -7.4690 0.0018 16 6 2.7170 -8.3821 0.0016 17 8 3.9104 -8.1603 0.0010 18 7 2.2677 -9.6528 0.0011 19 6 3.1705 -10.7131 -0.1179 20 6 4.3968 -10.5180 -0.7309 21 6 5.2989 -11.5643 -0.8529 22 6 4.9939 -12.8059 -0.3699 23 6 3.7629 -13.0283 0.2528 24 6 3.1293 -14.1985 0.8652 25 6 1.9233 -13.8064 1.3060 26 7 1.7336 -12.4811 1.0263 27 1 0.9379 -11.9729 1.2486 28 6 2.8434 -11.9742 0.3871 29 1 -0.4850 0.8400 -0.0004 30 1 0.3534 -2.3906 0.0005 31 1 0.6169 -4.9208 -0.8887 32 1 0.6175 -4.9206 0.8913 33 1 3.1495 -5.7992 0.0019 34 1 1.3175 -9.8313 0.0794 35 1 4.6529 -9.5425 -1.1174 36 1 6.2516 -11.3962 -1.3332 37 1 5.7030 -13.6143 -0.4702 38 1 3.5524 -15.1888 0.9472 39 1 1.2094 -14.4427 1.8077 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326870921.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:33 Heat of formation + Delta-G solvation = -35.041308 kcal Electronic energy + Delta-G solvation = -26117.232103 eV Core-core repulsion = 22025.767388 eV Total energy + Delta-G solvation = -4091.464715 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.116 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.78484 -40.73285 -39.08542 -38.13319 -37.05582 -35.45274 -34.50900 -33.78595 -31.45244 -31.32622 -29.52657 -28.97417 -28.20203 -25.36144 -24.20188 -22.52065 -22.36435 -21.01366 -20.16792 -19.82635 -19.25532 -18.29007 -17.80667 -17.36280 -16.54473 -16.16609 -15.92110 -15.48970 -15.41328 -15.08541 -14.96605 -14.63236 -14.53679 -14.21206 -14.11547 -13.64636 -13.55900 -13.31330 -12.96455 -12.32517 -12.23648 -12.09521 -11.98040 -11.87903 -11.67520 -11.37301 -11.13877 -10.92350 -10.53579 -10.35399 -9.69946 -9.67911 -9.41920 -9.15093 -8.72283 -8.49454 -8.16036 -7.69372 -6.56515 -3.98685 0.69909 1.31554 1.46787 2.12270 2.42376 2.75548 3.08364 3.11526 3.19506 3.23166 3.47044 3.65848 3.70882 4.06129 4.36721 4.45667 4.61182 4.73782 4.77737 4.95194 5.11105 5.21486 5.27310 5.34062 5.59007 5.67083 5.69588 5.76616 5.92560 6.03756 6.08338 6.29051 6.38342 6.44334 6.49053 6.76793 6.89654 7.13610 7.29689 7.41683 7.60950 7.83595 7.96585 8.38485 8.99201 9.31889 9.79615 10.60053 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.034102 B = 0.001938 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.877725 B =14440.821144 C =15122.512148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.027 3.973 3 Si 0.935 3.065 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.306 4.306 8 H 0.106 0.894 9 N -0.546 5.546 10 C 0.424 3.576 11 O -0.592 6.592 12 C 0.106 3.894 13 N -0.668 5.668 14 C 0.507 3.493 15 O -0.530 6.530 16 C 0.509 3.491 17 O -0.488 6.488 18 N -0.645 5.645 19 C 0.135 3.865 20 C -0.112 4.112 21 C -0.121 4.121 22 C -0.088 4.088 23 C -0.091 4.091 24 C -0.205 4.205 25 C 0.053 3.947 26 N -0.595 5.595 27 H 0.415 0.585 28 C 0.074 3.926 29 H 0.275 0.725 30 H 0.396 0.604 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.425 0.575 34 H 0.417 0.583 35 H 0.150 0.850 36 H 0.128 0.872 37 H 0.124 0.876 38 H 0.148 0.852 39 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.198 -26.445 0.798 26.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.435 4.435 8 H 0.124 0.876 9 N -0.180 5.180 10 C 0.210 3.790 11 O -0.478 6.478 12 C -0.021 4.021 13 N -0.323 5.323 14 C 0.286 3.714 15 O -0.408 6.408 16 C 0.291 3.709 17 O -0.360 6.360 18 N -0.291 5.291 19 C 0.039 3.961 20 C -0.133 4.133 21 C -0.141 4.141 22 C -0.108 4.108 23 C -0.097 4.097 24 C -0.230 4.230 25 C -0.073 4.073 26 N -0.198 5.198 27 H 0.251 0.749 28 C -0.034 4.034 29 H 0.085 0.915 30 H 0.230 0.770 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.265 0.735 34 H 0.253 0.747 35 H 0.168 0.832 36 H 0.146 0.854 37 H 0.141 0.859 38 H 0.165 0.835 39 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 1.729 -26.092 0.832 26.162 hybrid contribution -0.803 1.069 0.224 1.356 sum 0.925 -25.023 1.056 25.062 Atomic orbital electron populations 1.69604 1.06022 1.28735 1.49032 1.25340 0.95692 1.00000 0.96626 0.85849 0.78775 0.79988 0.79241 1.19713 1.20832 1.19715 1.19701 0.93513 0.81898 1.48431 0.87604 1.41764 1.09470 1.04394 1.62421 1.19614 0.88328 0.84842 0.86255 1.90539 1.13532 1.86594 1.57172 1.21150 0.91605 0.85471 1.03924 1.45508 1.13175 1.03733 1.69863 1.19683 0.88215 0.84153 0.79352 1.90759 1.15731 1.84708 1.49625 1.20316 0.89008 0.83878 0.77685 1.90779 1.15915 1.84247 1.45104 1.43004 1.11004 1.04194 1.70894 1.16773 0.92870 0.83843 1.02596 1.21188 0.92080 1.01222 0.98809 1.20577 0.99763 0.92188 1.01565 1.20302 0.94896 0.97265 0.98318 1.19056 0.94715 0.92726 1.03154 1.21685 0.95500 0.98317 1.07544 1.21827 0.98943 0.84044 1.02518 1.41722 1.16149 1.09838 1.52073 0.74862 1.17919 0.89774 0.93856 1.01842 0.91474 0.77005 0.89010 0.89050 0.73486 0.74652 0.83237 0.85388 0.85852 0.83455 0.81153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.40 13.05 55.50 0.72 -22.68 16 2 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 3 Si 0.94 20.32 29.55 -169.99 -5.02 15.30 16 4 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 7 C -0.31 -8.19 9.68 -14.94 -0.14 -8.34 16 8 H 0.11 2.96 7.16 -52.49 -0.38 2.58 16 9 N -0.55 -13.18 5.29 -10.97 -0.06 -13.24 16 10 C 0.42 9.50 7.85 -10.99 -0.09 9.42 16 11 O -0.59 -15.14 15.24 5.55 0.08 -15.05 16 12 C 0.11 1.83 6.15 -5.19 -0.03 1.80 16 13 N -0.67 -11.09 5.52 -61.95 -0.34 -11.43 16 14 C 0.51 7.67 7.88 -11.65 -0.09 7.58 16 15 O -0.53 -8.46 16.48 5.49 0.09 -8.37 16 16 C 0.51 7.08 7.69 -11.64 -0.09 6.99 16 17 O -0.49 -7.72 13.65 5.46 0.07 -7.65 16 18 N -0.65 -7.35 5.35 -10.21 -0.05 -7.40 16 19 C 0.14 1.59 6.44 -83.60 -0.54 1.05 16 20 C -0.11 -1.36 8.71 -39.33 -0.34 -1.70 16 21 C -0.12 -1.24 9.96 -39.98 -0.40 -1.64 16 22 C -0.09 -0.85 10.05 -39.59 -0.40 -1.25 16 23 C -0.09 -0.94 6.37 -105.15 -0.67 -1.61 16 24 C -0.21 -1.62 11.08 -37.66 -0.42 -2.04 16 25 C 0.05 0.34 11.82 -16.75 -0.20 0.14 16 26 N -0.59 -4.49 6.07 -10.54 -0.06 -4.56 16 27 H 0.41 2.16 8.96 -40.82 -0.37 1.79 16 28 C 0.07 0.78 7.18 -83.79 -0.60 0.18 16 29 H 0.28 6.83 8.31 -40.82 -0.34 6.49 16 30 H 0.40 9.09 7.90 -40.82 -0.32 8.77 16 31 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 32 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 33 H 0.42 7.51 6.91 -40.82 -0.28 7.22 16 34 H 0.42 3.90 8.27 -40.82 -0.34 3.56 16 35 H 0.15 1.98 5.77 -52.48 -0.30 1.68 16 36 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 37 H 0.12 0.89 8.06 -52.48 -0.42 0.46 16 38 H 0.15 0.84 8.06 -52.49 -0.42 0.42 16 39 H 0.17 0.47 8.06 -52.49 -0.42 0.05 16 LS Contribution 349.68 15.07 5.27 5.27 Total: -1.00 -32.41 349.68 -7.06 -39.47 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: -3.66 Total: 19.15 kcal Atomic # 6 Polarization: 15.30 SS G_CDS: -4.10 Total: 11.20 kcal Atomic # 7 Polarization: -59.51 SS G_CDS: 0.21 Total: -59.31 kcal Atomic # 8 Polarization: -31.32 SS G_CDS: 0.25 Total: -31.07 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.41 -7.06 -39.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326870921.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.425 kcal (2) G-P(sol) polarization free energy of solvation -32.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds