Wall clock time and date at job start Tue Mar 31 2020 05:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 120.00348 * 2 1 4 4 H 1.48505 * 109.46918 * 240.00357 * 3 2 1 5 5 H 1.48504 * 109.46956 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47418 * 119.99799 * 3 2 1 7 7 C 1.37884 * 119.99580 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99190 * 163.28014 * 7 2 1 9 9 C 1.50698 * 120.00369 * 343.28535 * 7 2 1 10 10 C 1.53000 * 115.55762 * 322.64160 * 9 7 2 11 11 N 1.46507 * 109.46795 * 270.33269 * 10 9 7 12 12 C 1.34769 * 119.99899 * 185.10806 * 11 10 9 13 13 O 1.21354 * 120.00287 * 354.86679 * 12 11 10 14 14 C 1.49452 * 120.00204 * 174.87019 * 12 11 10 15 15 O 1.21345 * 119.99468 * 5.12614 * 14 12 11 16 16 N 1.34774 * 119.99960 * 185.12991 * 14 12 11 17 17 C 1.46503 * 119.99726 * 180.02562 * 16 14 12 18 18 H 1.09008 * 109.64285 * 325.69767 * 17 16 14 19 19 C 1.53874 * 109.64699 * 205.26876 * 17 16 14 20 20 C 1.55045 * 106.62386 * 192.96414 * 19 17 16 21 21 S 1.83288 * 102.56767 * 42.43369 * 20 19 17 22 22 O 1.42104 * 109.35192 * 90.18600 * 21 20 19 23 23 O 1.42095 * 109.35474 * 223.25055 * 21 20 19 24 24 C 1.54161 * 109.65047 * 86.12434 * 17 16 14 25 25 C 1.52997 * 117.49506 * 108.32489 * 9 7 2 26 26 C 1.52999 * 117.50017 * 176.94853 * 9 7 2 27 27 H 0.97001 * 119.99834 * 5.01786 * 1 2 3 28 28 H 1.08990 * 109.47782 * 30.33427 * 10 9 7 29 29 H 1.09007 * 109.46810 * 150.34107 * 10 9 7 30 30 H 0.97000 * 120.00023 * 5.10491 * 11 10 9 31 31 H 0.96996 * 120.00565 * 359.97438 * 16 14 12 32 32 H 1.08994 * 110.02847 * 312.25610 * 19 17 16 33 33 H 1.09006 * 110.02871 * 73.67249 * 19 17 16 34 34 H 1.09007 * 110.79010 * 160.70237 * 20 19 17 35 35 H 1.09001 * 110.79256 * 284.16250 * 20 19 17 36 36 H 1.08997 * 110.32449 * 266.66813 * 24 17 16 37 37 H 1.09008 * 110.31893 * 28.86171 * 24 17 16 38 38 H 1.09004 * 117.49622 * 214.97721 * 25 9 7 39 39 H 1.08999 * 117.50321 * 0.02562 * 25 9 7 40 40 H 1.08999 * 117.49749 * 0.02562 * 26 9 7 41 41 H 1.08991 * 117.49872 * 144.99455 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0503 -1.2140 -0.2686 9 6 1.2988 -2.4715 0.3764 10 6 0.2682 -2.3500 1.5007 11 7 0.9249 -2.5730 2.7913 12 6 0.1922 -2.6168 3.9215 13 8 -0.9973 -2.3793 3.8832 14 6 0.8445 -2.9577 5.2222 15 8 2.0478 -3.1037 5.2775 16 7 0.0961 -3.1031 6.3337 17 6 0.7357 -3.4367 7.6088 18 1 1.5903 -4.0894 7.4304 19 6 -0.2760 -4.1477 8.5246 20 6 0.3488 -4.1695 9.9434 21 16 1.0523 -2.4838 10.0952 22 8 0.0768 -1.6151 10.6548 23 8 2.3459 -2.5641 10.6778 24 6 1.2067 -2.1450 8.3062 25 6 1.0088 -3.4739 -0.7425 26 6 2.0988 -3.7728 0.2889 27 1 -0.4850 0.8368 -0.0735 28 1 -0.1715 -1.3529 1.4844 29 1 -0.5147 -3.0949 1.3580 30 1 1.8871 -2.6892 2.8322 31 1 -0.8657 -2.9860 6.2896 32 1 -1.2169 -3.5977 8.5395 33 1 -0.4443 -5.1665 8.1751 34 1 -0.4166 -4.3390 10.7007 35 1 1.1333 -4.9235 10.0092 36 1 2.2452 -1.9342 8.0510 37 1 0.5690 -1.3076 8.0226 38 1 0.0838 -4.0470 -0.6775 39 1 1.3288 -3.2097 -1.7504 40 1 3.1357 -3.7049 -0.0402 41 1 1.8912 -4.5421 1.0325 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334796903.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:23 Heat of formation + Delta-G solvation = -108.167017 kcal Electronic energy + Delta-G solvation = -26036.403795 eV Core-core repulsion = 22044.919312 eV Total energy + Delta-G solvation = -3991.484483 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.113 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.54179 -38.62191 -37.44333 -37.11113 -36.84426 -36.37527 -33.73517 -32.91795 -32.34043 -30.02774 -27.12865 -25.93737 -25.41316 -23.44691 -21.69875 -21.33535 -20.10646 -19.46263 -19.22246 -18.36000 -17.45601 -17.16485 -16.49276 -16.27204 -16.03726 -15.61881 -15.36109 -14.96122 -14.72635 -14.61625 -14.41173 -14.00498 -13.75123 -13.38264 -13.15507 -12.78774 -12.70981 -12.63524 -12.52842 -12.39283 -11.80282 -11.77521 -11.71319 -11.41328 -11.26073 -11.01577 -10.92040 -10.87600 -10.58299 -10.40260 -9.74299 -9.58049 -9.32048 -9.25636 -8.91333 -8.48920 -8.11983 -6.21132 -4.22777 -0.41545 1.61613 2.05231 2.46240 3.14335 3.21474 3.28735 3.31507 3.47248 3.57192 3.77682 3.88414 4.01371 4.13242 4.26287 4.32837 4.43654 4.75233 4.90174 4.94378 5.03470 5.13419 5.29105 5.39630 5.41477 5.87017 5.94402 6.19572 6.35407 6.50523 6.54861 6.74317 6.88079 6.93480 7.07975 7.22962 7.47073 7.68067 7.84580 8.03132 8.24586 8.46146 8.73168 9.35967 10.81070 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.018058 B = 0.002718 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.186332 B =10299.026470 C =10992.650560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.071 3.929 3 Si 0.894 3.106 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.497 4.497 8 H 0.065 0.935 9 C 0.038 3.962 10 C 0.139 3.861 11 N -0.670 5.670 12 C 0.493 3.507 13 O -0.534 6.534 14 C 0.512 3.488 15 O -0.515 6.515 16 N -0.700 5.700 17 C 0.154 3.846 18 H 0.115 0.885 19 C -0.130 4.130 20 C -0.585 4.585 21 S 2.397 3.603 22 O -0.933 6.933 23 O -0.935 6.935 24 C -0.616 4.616 25 C -0.190 4.190 26 C -0.209 4.209 27 H 0.267 0.733 28 H 0.127 0.873 29 H 0.044 0.956 30 H 0.409 0.591 31 H 0.417 0.583 32 H 0.097 0.903 33 H 0.108 0.892 34 H 0.143 0.857 35 H 0.142 0.858 36 H 0.148 0.852 37 H 0.146 0.854 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.461 -9.241 17.608 19.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.133 4.133 3 Si 0.721 3.279 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.534 4.534 8 H 0.083 0.917 9 C 0.037 3.963 10 C 0.018 3.982 11 N -0.319 5.319 12 C 0.271 3.729 13 O -0.413 6.413 14 C 0.293 3.707 15 O -0.389 6.389 16 N -0.355 5.355 17 C 0.047 3.953 18 H 0.133 0.867 19 C -0.169 4.169 20 C -0.715 4.715 21 S 2.579 3.421 22 O -0.930 6.930 23 O -0.932 6.932 24 C -0.746 4.746 25 C -0.229 4.229 26 C -0.247 4.247 27 H 0.077 0.923 28 H 0.144 0.856 29 H 0.063 0.937 30 H 0.244 0.756 31 H 0.254 0.746 32 H 0.116 0.884 33 H 0.127 0.873 34 H 0.161 0.839 35 H 0.160 0.840 36 H 0.166 0.834 37 H 0.164 0.836 38 H 0.085 0.915 39 H 0.100 0.900 40 H 0.097 0.903 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.369 -8.482 18.411 20.317 hybrid contribution 0.283 0.347 -0.860 0.969 sum -1.086 -8.135 17.550 19.375 Atomic orbital electron populations 1.69787 1.06099 1.27558 1.47325 1.25003 0.94793 0.99374 0.94087 0.86623 0.79808 0.82573 0.78926 1.20087 1.21087 1.19933 1.20502 0.96364 0.89605 1.46957 0.91721 1.19138 0.95085 0.88892 0.93214 1.21602 0.93710 1.04741 0.78116 1.46126 1.12035 1.67107 1.06671 1.19763 0.87272 0.80924 0.84900 1.90739 1.14871 1.49450 1.86200 1.20704 0.87177 0.77159 0.85615 1.90750 1.14042 1.47986 1.86088 1.45680 1.12113 1.71043 1.06677 1.21338 0.97207 0.92904 0.83862 0.86689 1.22476 0.99025 1.04721 0.90707 1.30597 1.13015 1.23530 1.04380 1.08891 0.75872 0.78966 0.78415 1.93640 1.61426 1.62565 1.75385 1.93633 1.38736 1.86281 1.74503 1.31118 1.12666 1.07098 1.23695 1.22980 0.97718 1.06262 0.95911 1.22887 0.96518 1.01865 1.03395 0.92250 0.85611 0.93746 0.75574 0.74603 0.88417 0.87309 0.83863 0.83960 0.83375 0.83617 0.91488 0.89989 0.90260 0.91259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.26 11.01 55.43 0.61 -22.65 16 2 C 0.07 1.84 5.07 -17.81 -0.09 1.75 16 3 Si 0.89 20.21 29.57 -169.99 -5.03 15.18 16 4 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.50 -12.71 9.00 -34.44 -0.31 -13.02 16 8 H 0.06 1.65 7.87 -52.49 -0.41 1.23 16 9 C 0.04 0.86 1.83 -155.66 -0.28 0.58 16 10 C 0.14 3.14 5.43 -4.04 -0.02 3.12 16 11 N -0.67 -13.09 5.40 -60.73 -0.33 -13.42 16 12 C 0.49 8.86 7.88 -11.59 -0.09 8.77 16 13 O -0.53 -10.61 16.50 5.49 0.09 -10.52 16 14 C 0.51 7.49 7.87 -11.58 -0.09 7.40 16 15 O -0.51 -8.37 16.14 5.50 0.09 -8.28 16 16 N -0.70 -7.17 5.04 -53.20 -0.27 -7.44 16 17 C 0.15 1.13 2.89 -66.87 -0.19 0.93 16 18 H 0.12 0.84 7.56 -51.92 -0.39 0.45 16 19 C -0.13 -0.53 5.98 -25.19 -0.15 -0.68 16 20 C -0.59 -2.03 7.31 38.24 0.28 -1.75 16 21 S 2.40 16.74 6.10 -107.50 -0.66 16.08 16 22 O -0.93 -9.86 18.14 -57.73 -1.05 -10.91 16 23 O -0.93 -10.08 18.15 -57.73 -1.05 -11.13 16 24 C -0.62 -4.50 6.90 37.76 0.26 -4.24 16 25 C -0.19 -4.06 9.88 -26.73 -0.26 -4.32 16 26 C -0.21 -4.17 9.54 -26.73 -0.25 -4.43 16 27 H 0.27 6.87 8.32 -40.82 -0.34 6.53 16 28 H 0.13 3.25 5.28 -51.93 -0.27 2.98 16 29 H 0.04 0.99 7.88 -51.93 -0.41 0.58 16 30 H 0.41 7.70 7.73 -40.82 -0.32 7.39 16 31 H 0.42 3.72 8.08 -40.82 -0.33 3.39 16 32 H 0.10 0.30 8.12 -51.93 -0.42 -0.12 16 33 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.14 0.28 8.14 -51.92 -0.42 -0.14 16 35 H 0.14 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.15 1.14 8.14 -51.93 -0.42 0.71 16 37 H 0.15 1.05 8.07 -51.92 -0.42 0.63 16 38 H 0.07 1.34 8.03 -51.93 -0.42 0.93 16 39 H 0.08 1.77 8.14 -51.93 -0.42 1.35 16 40 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 41 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 LS Contribution 360.89 15.07 5.44 5.44 Total: -1.00 -34.65 360.89 -8.84 -43.50 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -5.49 Total: 10.04 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: -1.21 Total: -5.90 kcal Atomic # 7 Polarization: -43.52 SS G_CDS: 0.01 Total: -43.51 kcal Atomic # 8 Polarization: -38.92 SS G_CDS: -1.92 Total: -40.83 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.03 Total: 15.18 kcal Atomic # 16 Polarization: 16.74 SS G_CDS: -0.66 Total: 16.08 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.65 -8.84 -43.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334796903.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.668 kcal (2) G-P(sol) polarization free energy of solvation -34.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds