Wall clock time and date at job start Tue Mar 31 2020 06:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00121 * 2 1 4 4 H 1.48499 * 109.46631 * 239.99831 * 3 2 1 5 5 H 1.48492 * 109.47198 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46908 * 120.00190 * 3 2 1 7 7 C 1.37882 * 120.00001 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99945 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99566 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.47136 * 299.99766 * 9 7 2 11 11 O 1.42898 * 109.47074 * 60.00487 * 9 7 2 12 12 C 1.53005 * 109.46802 * 180.02562 * 9 7 2 13 13 N 1.46898 * 109.46957 * 180.02562 * 12 9 7 14 14 C 1.46906 * 110.99825 * 189.99955 * 13 12 9 15 15 C 1.53237 * 109.33763 * 187.25538 * 14 13 12 16 16 N 1.47086 * 108.52232 * 306.16759 * 15 14 13 17 17 S 1.65596 * 120.88184 * 230.91568 * 16 15 14 18 18 O 1.42104 * 106.40023 * 203.53981 * 17 16 15 19 19 O 1.42095 * 106.40256 * 336.45594 * 17 16 15 20 20 C 1.76192 * 107.21917 * 90.00299 * 17 16 15 21 21 C 1.39874 * 125.90369 * 89.99752 * 20 17 16 22 22 C 1.35314 * 107.91965 * 180.02562 * 21 20 17 23 23 N 1.34947 * 107.75140 * 359.97438 * 22 21 20 24 24 H 0.96995 * 126.04165 * 180.02562 * 23 22 21 25 25 N 1.30848 * 125.89608 * 269.69008 * 20 17 16 26 26 C 1.47082 * 118.23312 * 51.18562 * 16 15 14 27 27 C 1.46897 * 110.99958 * 314.29991 * 13 12 9 28 28 H 0.97002 * 119.99781 * 0.02562 * 1 2 3 29 29 H 0.96696 * 114.00535 * 59.99663 * 11 9 7 30 30 H 1.09001 * 109.47102 * 59.99959 * 12 9 7 31 31 H 1.08998 * 109.47076 * 300.00295 * 12 9 7 32 32 H 1.09001 * 109.49044 * 67.29688 * 14 13 12 33 33 H 1.08994 * 109.49187 * 307.21283 * 14 13 12 34 34 H 1.09004 * 109.62487 * 186.46212 * 15 14 13 35 35 H 1.08996 * 109.78916 * 65.97470 * 15 14 13 36 36 H 1.07992 * 126.03410 * 359.97438 * 21 20 17 37 37 H 1.08004 * 126.12405 * 179.97438 * 22 21 20 38 38 H 1.09002 * 109.62515 * 68.53060 * 26 16 15 39 39 H 1.09000 * 109.62815 * 189.10459 * 26 16 15 40 40 H 1.08993 * 109.49479 * 292.70262 * 27 13 12 41 41 H 1.09001 * 109.49515 * 52.79317 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6962 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0017 10 1 0.6246 -2.5563 0.8920 11 8 0.4290 -2.5756 -1.1647 12 6 2.2451 -3.6621 0.0027 13 7 1.5106 -4.9343 0.0033 14 6 2.4170 -6.0654 0.2424 15 6 1.6496 -7.3787 0.0561 16 7 0.4547 -7.3473 0.9132 17 16 0.1128 -8.5997 1.9411 18 8 -1.2867 -8.5504 2.1821 19 8 0.7706 -9.7432 1.4130 20 6 0.8953 -8.2412 3.4785 21 6 0.3270 -7.5335 4.5428 22 6 1.2427 -7.4705 5.5370 23 7 2.3510 -8.1158 5.1171 24 1 3.1706 -8.2306 5.6229 25 7 2.1065 -8.5957 3.8239 26 6 -0.4317 -6.1766 0.8285 27 6 0.4176 -4.9106 0.9844 28 1 -0.4850 0.8401 -0.0004 29 1 0.9208 -2.5309 -1.9961 30 1 2.8718 -3.6036 0.8927 31 1 2.8718 -3.6052 -0.8873 32 1 2.8048 -6.0119 1.2597 33 1 3.2446 -6.0242 -0.4656 34 1 2.2841 -8.2173 0.3431 35 1 1.3499 -7.4862 -0.9863 36 1 -0.6667 -7.1114 4.5663 37 1 1.1102 -6.9898 6.4951 38 1 -0.9317 -6.1653 -0.1400 39 1 -1.1734 -6.2205 1.6261 40 1 0.8333 -4.8733 1.9912 41 1 -0.2048 -4.0320 0.8145 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363784200.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:59 Heat of formation + Delta-G solvation = -24.824365 kcal Electronic energy + Delta-G solvation = -27158.814219 eV Core-core repulsion = 23203.236496 eV Total energy + Delta-G solvation = -3955.577723 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.119 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.52447 -38.82882 -37.35290 -36.00851 -35.92739 -33.72353 -32.13888 -32.11594 -30.99730 -30.48433 -28.74697 -26.23416 -23.94063 -23.57433 -23.38222 -21.78919 -20.93832 -19.86510 -18.83770 -18.61262 -17.71065 -16.96925 -16.68126 -15.95977 -15.17527 -14.93512 -14.71444 -14.62510 -14.52702 -14.43235 -14.17110 -14.01842 -13.79833 -13.67375 -13.12387 -12.71164 -12.29901 -12.28247 -12.17883 -11.81729 -11.75653 -11.38971 -11.34836 -11.18973 -11.06510 -10.93985 -10.90170 -10.65615 -10.57024 -10.38110 -10.09783 -9.27259 -9.18723 -8.89774 -8.58595 -8.10537 -7.75204 -6.05045 -4.23183 0.18662 1.16679 1.95565 2.43420 2.93695 3.25312 3.31318 3.32587 3.61536 3.99575 4.27108 4.43575 4.54015 4.70062 4.75613 5.20121 5.21295 5.22843 5.29449 5.38854 5.43010 5.50403 5.63205 5.80680 5.93040 5.98178 6.08294 6.09205 6.19110 6.28415 6.31299 6.44637 6.60891 6.70942 6.78755 6.89184 7.49368 7.57950 7.71722 7.80125 8.15286 8.79699 9.40721 9.56625 10.99027 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.017847 B = 0.003321 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.524874 B = 8430.146533 C = 9014.013241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.081 3.919 3 Si 0.889 3.111 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.278 1.278 7 C -0.576 4.576 8 H 0.053 0.947 9 C 0.230 3.770 10 H 0.058 0.942 11 O -0.555 6.555 12 C 0.031 3.969 13 N -0.524 5.524 14 C 0.040 3.960 15 C 0.128 3.872 16 N -0.988 5.988 17 S 2.721 3.279 18 O -0.942 6.942 19 O -0.945 6.945 20 C -0.482 4.482 21 C -0.195 4.195 22 C 0.054 3.946 23 N -0.457 5.457 24 H 0.443 0.557 25 N -0.184 5.184 26 C 0.126 3.874 27 C 0.037 3.963 28 H 0.261 0.739 29 H 0.346 0.654 30 H 0.025 0.975 31 H 0.066 0.934 32 H 0.028 0.972 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.166 0.834 37 H 0.188 0.812 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.027 0.973 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.832 -15.415 8.938 18.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.125 4.125 3 Si 0.716 3.284 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.615 4.615 8 H 0.072 0.928 9 C 0.172 3.828 10 H 0.076 0.924 11 O -0.357 6.357 12 C -0.097 4.097 13 N -0.249 5.249 14 C -0.090 4.090 15 C 0.003 3.997 16 N -0.829 5.829 17 S 2.803 3.197 18 O -0.931 6.931 19 O -0.934 6.934 20 C -0.728 4.728 21 C -0.225 4.225 22 C -0.093 4.093 23 N -0.169 5.169 24 H 0.288 0.712 25 N -0.011 5.011 26 C 0.001 3.999 27 C -0.092 4.092 28 H 0.071 0.929 29 H 0.190 0.810 30 H 0.043 0.957 31 H 0.085 0.915 32 H 0.047 0.953 33 H 0.100 0.900 34 H 0.107 0.893 35 H 0.103 0.897 36 H 0.183 0.817 37 H 0.205 0.795 38 H 0.106 0.894 39 H 0.108 0.892 40 H 0.045 0.955 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 2.506 -16.741 8.448 18.919 hybrid contribution 1.706 2.068 1.786 3.222 sum 4.212 -14.674 10.234 18.380 Atomic orbital electron populations 1.70050 1.05871 1.26597 1.46833 1.24999 0.94684 0.99022 0.93796 0.86743 0.79736 0.83257 0.78651 1.20120 1.21159 1.20310 1.21603 0.93109 0.91617 1.55122 0.92839 1.19428 0.87817 0.88835 0.86675 0.92442 1.86526 1.37822 1.96280 1.15119 1.23074 0.97588 0.89445 0.99576 1.61909 1.11004 1.02953 1.49000 1.22454 0.95446 0.91530 0.99608 1.21596 0.84967 0.97719 0.95416 1.57728 1.35502 1.36981 1.52702 1.01613 0.73356 0.72922 0.71796 1.93611 1.27669 1.86270 1.85525 1.93582 1.76576 1.46192 1.77079 1.35430 1.02779 1.11505 1.23066 1.21305 1.02508 1.06467 0.92205 1.22786 0.87231 0.98318 1.00976 1.46816 1.14775 1.41932 1.13382 0.71204 1.77358 1.14501 1.15613 0.93665 1.21723 0.91260 0.83050 1.03843 1.22604 0.94736 0.98777 0.93100 0.92880 0.81049 0.95717 0.91539 0.95334 0.89977 0.89281 0.89657 0.81663 0.79461 0.89383 0.89152 0.95476 0.87065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.48 12.84 55.43 0.71 -23.77 16 2 C 0.08 2.20 5.40 -17.82 -0.10 2.11 16 3 Si 0.89 20.59 29.54 -169.99 -5.02 15.57 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.58 -15.20 8.76 -34.44 -0.30 -15.51 16 8 H 0.05 1.38 7.74 -52.49 -0.41 0.98 16 9 C 0.23 5.47 2.11 -27.88 -0.06 5.41 16 10 H 0.06 1.48 6.18 -51.93 -0.32 1.16 16 11 O -0.56 -13.54 12.40 -35.23 -0.44 -13.97 16 12 C 0.03 0.60 4.87 -3.82 -0.02 0.58 16 13 N -0.52 -8.83 4.64 -234.32 -1.09 -9.92 16 14 C 0.04 0.55 5.58 -3.70 -0.02 0.53 16 15 C 0.13 1.61 6.53 -3.60 -0.02 1.59 16 16 N -0.99 -12.97 3.33 -113.23 -0.38 -13.35 16 17 S 2.72 36.82 5.86 -107.50 -0.63 36.19 16 18 O -0.94 -14.06 16.64 -57.17 -0.95 -15.02 16 19 O -0.94 -14.75 16.80 -57.17 -0.96 -15.71 16 20 C -0.48 -6.18 7.25 -17.36 -0.13 -6.31 16 21 C -0.19 -2.10 10.58 -40.01 -0.42 -2.52 16 22 C 0.05 0.44 11.99 -17.22 -0.21 0.23 16 23 N -0.46 -4.05 7.36 30.45 0.22 -3.82 16 24 H 0.44 2.23 8.96 -182.61 -1.64 0.59 16 25 N -0.18 -2.35 12.70 31.27 0.40 -1.95 16 26 C 0.13 1.73 6.53 -3.60 -0.02 1.70 16 27 C 0.04 0.61 5.04 -3.70 -0.02 0.59 16 28 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.35 7.69 9.04 45.56 0.41 8.10 16 30 H 0.02 0.49 8.08 -51.93 -0.42 0.07 16 31 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 32 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 1.05 8.11 -51.93 -0.42 0.63 16 34 H 0.09 1.02 7.22 -51.93 -0.38 0.64 16 35 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.17 1.51 8.06 -52.49 -0.42 1.09 16 37 H 0.19 0.70 8.06 -52.48 -0.42 0.28 16 38 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 39 H 0.09 1.09 7.22 -51.93 -0.37 0.72 16 40 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.11 2.11 5.58 -51.93 -0.29 1.82 16 LS Contribution 351.35 15.07 5.29 5.29 Total: -1.00 -34.93 351.35 -10.08 -45.01 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -5.93 Total: 7.03 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: -1.32 Total: -11.60 kcal Atomic # 7 Polarization: -52.68 SS G_CDS: -0.13 Total: -52.81 kcal Atomic # 8 Polarization: -42.35 SS G_CDS: -2.35 Total: -44.70 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 16 Polarization: 36.82 SS G_CDS: -0.63 Total: 36.19 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.93 -10.08 -45.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363784200.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.189 kcal (2) G-P(sol) polarization free energy of solvation -34.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds