Wall clock time and date at job start Tue Mar 31 2020 04:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86804 * 119.99878 * 2 1 4 4 H 1.48500 * 109.46808 * 269.99740 * 3 2 1 5 5 H 1.48497 * 109.47207 * 29.99737 * 3 2 1 6 6 H 1.48496 * 109.47043 * 149.99888 * 3 2 1 7 7 C 1.38800 * 120.00105 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99881 * 180.02562 * 7 2 1 9 9 S 1.76197 * 119.99846 * 0.02562 * 7 2 1 10 10 C 1.81002 * 99.99886 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.46995 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00432 * 0.02562 * 11 10 9 13 13 N 1.34781 * 119.99975 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00080 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47007 * 180.02562 * 14 13 11 16 16 H 1.09004 * 109.47261 * 60.00083 * 15 14 13 17 17 O 1.42905 * 109.47264 * 299.99994 * 15 14 13 18 18 C 1.53002 * 109.47143 * 179.97438 * 15 14 13 19 19 N 1.46896 * 109.47035 * 184.99974 * 18 15 14 20 20 C 1.46903 * 110.99948 * 180.02562 * 19 18 15 21 21 C 1.50695 * 109.47219 * 179.97438 * 20 19 18 22 22 C 1.38427 * 122.53867 * 90.00262 * 21 20 19 23 23 C 1.33387 * 114.92084 * 179.97438 * 22 21 20 24 24 S 1.75886 * 109.59657 * 359.97438 * 23 22 21 25 25 C 1.33390 * 122.54070 * 269.70590 * 21 20 19 26 26 H 0.97001 * 120.00768 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.47205 * 59.99889 * 10 9 7 28 28 H 1.09002 * 109.47115 * 299.99774 * 10 9 7 29 29 H 0.96998 * 119.99822 * 0.02562 * 13 11 10 30 30 H 1.08992 * 109.46764 * 60.00591 * 14 13 11 31 31 H 1.09002 * 109.47092 * 300.00472 * 14 13 11 32 32 H 0.96702 * 113.99404 * 300.00214 * 17 15 14 33 33 H 1.08997 * 109.47011 * 304.99871 * 18 15 14 34 34 H 1.09005 * 109.46847 * 64.99998 * 18 15 14 35 35 H 1.00899 * 110.99834 * 303.95189 * 19 18 15 36 36 H 1.09004 * 109.46768 * 300.00191 * 20 19 18 37 37 H 1.09001 * 109.47253 * 59.99648 * 20 19 18 38 38 H 1.07999 * 122.53721 * 359.97438 * 22 21 20 39 39 H 1.08002 * 125.20416 * 180.02562 * 23 22 21 40 40 H 1.07992 * 125.20360 * 0.03020 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7279 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9873 -5.3027 0.0012 12 8 0.7911 -5.5023 0.0011 13 7 2.8441 -6.3431 0.0008 14 6 2.3304 -7.7151 0.0008 15 6 3.5025 -8.6985 0.0009 16 1 4.1110 -8.5384 0.8910 17 8 4.3005 -8.4887 -1.1658 18 6 2.9660 -10.1314 0.0016 19 7 4.0864 -11.0737 0.1225 20 6 3.6081 -12.4627 0.1259 21 6 4.7829 -13.3982 0.2504 22 6 5.2685 -13.8249 1.4744 23 6 6.3132 -14.6515 1.4074 24 16 6.7369 -14.9315 -0.2765 25 6 5.4300 -13.8824 -0.8108 26 1 -0.4851 0.8400 -0.0004 27 1 3.1245 -3.7313 0.8905 28 1 3.1244 -3.7313 -0.8895 29 1 3.8009 -6.1835 0.0004 30 1 1.7216 -7.8750 -0.8890 31 1 1.7220 -7.8752 0.8910 32 1 3.8225 -8.6145 -1.9970 33 1 2.2868 -10.2646 0.8436 34 1 2.4316 -10.3197 -0.9296 35 1 4.7633 -10.9265 -0.6112 36 1 2.9330 -12.6123 0.9686 37 1 3.0784 -12.6669 -0.8046 38 1 4.8343 -13.5122 2.4126 39 1 6.8209 -15.0835 2.2572 40 1 5.1895 -13.6626 -1.8404 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496948022.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:00 Heat of formation + Delta-G solvation = -57.310783 kcal Electronic energy + Delta-G solvation = -21761.159811 eV Core-core repulsion = 18214.633490 eV Total energy + Delta-G solvation = -3546.526320 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 330.086 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.53796 -38.94755 -37.97478 -35.29238 -34.11235 -32.42162 -31.20142 -30.06289 -28.76356 -26.67035 -25.47757 -24.23361 -22.78262 -22.04612 -20.29530 -19.20504 -18.21625 -17.93122 -17.09699 -16.69609 -16.35034 -15.87646 -15.61103 -15.24458 -14.98845 -14.79400 -14.66300 -14.01831 -13.80544 -13.51850 -13.29626 -13.20911 -13.04705 -12.94569 -12.64819 -12.54370 -12.24120 -12.10076 -11.73693 -11.29828 -11.15419 -11.05527 -11.01593 -10.77090 -10.47145 -9.80562 -9.41845 -9.27323 -9.06476 -8.95872 -8.90208 -8.76040 -8.23157 -6.49393 -6.20979 -3.91522 0.58200 1.25055 1.57278 2.24062 2.99590 3.09278 3.23220 3.27908 3.31889 3.59747 3.91991 4.08374 4.21341 4.38671 4.53521 4.57251 4.66528 4.71412 4.89177 4.97557 5.09219 5.14188 5.17395 5.19397 5.24008 5.28876 5.53028 5.60571 5.71897 5.80394 5.91367 5.96016 6.04867 6.16235 6.44596 6.59972 6.92235 7.25248 7.60578 7.72095 8.36164 8.60870 9.24438 10.86471 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.040288 B = 0.001493 C = 0.001467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.826810 B =18748.382429 C =19079.457793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.153 4.153 11 C 0.532 3.468 12 O -0.521 6.521 13 N -0.733 5.733 14 C 0.091 3.909 15 C 0.098 3.902 16 H 0.115 0.885 17 O -0.556 6.556 18 C 0.030 3.970 19 N -0.679 5.679 20 C 0.117 3.883 21 C -0.097 4.097 22 C -0.116 4.116 23 C -0.214 4.214 24 S 0.092 5.908 25 C -0.209 4.209 26 H 0.268 0.732 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.403 0.597 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.375 0.625 33 H 0.087 0.913 34 H 0.038 0.962 35 H 0.349 0.651 36 H 0.083 0.917 37 H 0.039 0.961 38 H 0.142 0.858 39 H 0.164 0.836 40 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.535 -31.112 -0.521 33.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.165 5.835 10 C -0.303 4.303 11 C 0.318 3.682 12 O -0.395 6.395 13 N -0.388 5.388 14 C -0.034 4.034 15 C 0.038 3.962 16 H 0.133 0.867 17 O -0.361 6.361 18 C -0.100 4.100 19 N -0.311 5.311 20 C -0.014 4.014 21 C -0.110 4.110 22 C -0.147 4.147 23 C -0.350 4.350 24 S 0.356 5.644 25 C -0.345 4.345 26 H 0.078 0.922 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.238 0.762 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.222 0.778 33 H 0.105 0.895 34 H 0.056 0.944 35 H 0.168 0.832 36 H 0.102 0.898 37 H 0.057 0.943 38 H 0.160 0.840 39 H 0.181 0.819 40 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 11.970 -32.049 -0.116 34.211 hybrid contribution 0.654 1.875 -0.580 2.069 sum 12.625 -30.174 -0.696 32.716 Atomic orbital electron populations 1.70015 1.05958 1.27448 1.46913 1.24989 0.95022 0.99024 0.94523 0.86164 0.79423 0.81548 0.78348 1.20273 1.20752 1.19684 1.22878 0.94946 0.91649 1.58916 0.90891 1.85372 1.05004 0.96361 1.96729 1.23526 1.06531 0.95274 1.05017 1.20334 0.86467 0.86341 0.75073 1.90698 1.15423 1.85649 1.47738 1.45855 1.10310 1.04856 1.77759 1.21883 0.96201 0.82233 1.03099 1.22234 0.92304 0.91646 0.89971 0.86685 1.86625 1.40606 1.93050 1.15864 1.22585 0.93481 0.92367 1.01580 1.60396 1.14573 1.01977 1.54192 1.20595 0.93223 0.86401 1.01206 1.18823 0.99581 1.00324 0.92251 1.20078 0.97223 0.98532 0.98842 1.25621 1.03323 1.06392 0.99630 1.84332 1.32415 1.47533 1.00114 1.25518 1.01255 1.04976 1.02780 0.92194 0.89176 0.89162 0.76236 0.91465 0.90630 0.77806 0.89475 0.94417 0.83157 0.89848 0.94260 0.84044 0.81850 0.82081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.24 13.22 55.49 0.73 -25.51 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.49 29.55 -169.99 -5.02 16.46 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 7 C -0.54 -15.35 9.50 30.94 0.29 -15.06 16 8 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 9 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 10 C -0.15 -3.11 6.16 36.01 0.22 -2.89 16 11 C 0.53 9.91 7.85 -10.98 -0.09 9.82 16 12 O -0.52 -11.76 15.86 5.56 0.09 -11.68 16 13 N -0.73 -9.66 5.45 -60.30 -0.33 -9.99 16 14 C 0.09 0.96 5.34 -4.04 -0.02 0.94 16 15 C 0.10 0.76 3.29 -26.73 -0.09 0.67 16 16 H 0.12 0.98 8.14 -51.93 -0.42 0.56 16 17 O -0.56 -4.44 12.60 -35.23 -0.44 -4.88 16 18 C 0.03 0.19 5.36 -3.82 -0.02 0.17 16 19 N -0.68 -4.66 6.49 -115.06 -0.75 -5.41 16 20 C 0.12 0.72 5.94 -4.98 -0.03 0.69 16 21 C -0.10 -0.66 5.31 -106.25 -0.56 -1.23 16 22 C -0.12 -0.80 9.98 -41.21 -0.41 -1.21 16 23 C -0.21 -1.35 11.23 29.04 0.33 -1.03 16 24 S 0.09 0.58 23.34 -107.50 -2.51 -1.93 16 25 C -0.21 -1.35 10.98 29.04 0.32 -1.03 16 26 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 27 H 0.09 1.70 8.14 -51.91 -0.42 1.28 16 28 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 29 H 0.40 4.52 8.35 -40.82 -0.34 4.18 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.37 2.03 9.05 45.56 0.41 2.44 16 33 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 35 H 0.35 2.48 8.28 -39.29 -0.33 2.16 16 36 H 0.08 0.49 8.13 -51.93 -0.42 0.07 16 37 H 0.04 0.22 8.12 -51.93 -0.42 -0.20 16 38 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 39 H 0.16 0.71 8.06 -52.49 -0.42 0.29 16 40 H 0.16 0.79 8.06 -52.49 -0.42 0.36 16 LS Contribution 374.04 15.07 5.64 5.64 Total: -1.00 -35.06 374.04 -9.83 -44.90 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -4.87 Total: 4.43 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: -0.16 Total: -8.14 kcal Atomic # 7 Polarization: -40.57 SS G_CDS: -0.34 Total: -40.91 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: -0.36 Total: -16.56 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.09 SS G_CDS: -4.72 Total: -5.81 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.06 -9.83 -44.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496948022.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.414 kcal (2) G-P(sol) polarization free energy of solvation -35.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds