Wall clock time and date at job start Tue Mar 31 2020 04:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86796 * 119.99842 * 2 1 4 4 H 1.48502 * 109.47354 * 270.00448 * 3 2 1 5 5 H 1.48498 * 109.47178 * 30.00567 * 3 2 1 6 6 H 1.48497 * 109.47264 * 150.00759 * 3 2 1 7 7 C 1.38797 * 120.00037 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99868 * 359.97438 * 7 2 1 9 9 S 1.76197 * 120.00190 * 179.97438 * 7 2 1 10 10 C 1.80996 * 100.00355 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47109 * 180.02562 * 10 9 7 12 12 O 1.21281 * 120.00051 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99840 * 180.02562 * 11 10 9 14 14 C 1.46494 * 119.99921 * 179.97438 * 13 11 10 15 15 C 1.53003 * 109.47283 * 179.97438 * 14 13 11 16 16 H 1.08999 * 109.47269 * 305.00317 * 15 14 13 17 17 O 1.42903 * 109.46459 * 65.00211 * 15 14 13 18 18 C 1.53001 * 109.47376 * 185.00021 * 15 14 13 19 19 N 1.46898 * 109.46893 * 180.02562 * 18 15 14 20 20 C 1.46900 * 110.99589 * 180.02562 * 19 18 15 21 21 C 1.50705 * 109.47217 * 179.97438 * 20 19 18 22 22 C 1.38420 * 122.54022 * 269.73737 * 21 20 19 23 23 C 1.33388 * 114.92200 * 179.75672 * 22 21 20 24 24 S 1.75882 * 109.59260 * 0.47818 * 23 22 21 25 25 C 1.33390 * 122.53718 * 90.01992 * 21 20 19 26 26 H 0.97000 * 120.00017 * 359.97438 * 1 2 3 27 27 H 1.08992 * 109.47149 * 59.99581 * 10 9 7 28 28 H 1.08999 * 109.46970 * 299.99658 * 10 9 7 29 29 H 0.96999 * 119.99691 * 0.02562 * 13 11 10 30 30 H 1.09005 * 109.47040 * 60.00167 * 14 13 11 31 31 H 1.08999 * 109.47079 * 299.99869 * 14 13 11 32 32 H 0.96700 * 114.00311 * 60.00313 * 17 15 14 33 33 H 1.08999 * 109.47164 * 300.00361 * 18 15 14 34 34 H 1.08997 * 109.47124 * 60.00063 * 18 15 14 35 35 H 1.00904 * 110.99845 * 303.94958 * 19 18 15 36 36 H 1.09002 * 109.47169 * 299.99734 * 20 19 18 37 37 H 1.09003 * 109.47314 * 59.99718 * 20 19 18 38 38 H 1.08008 * 122.53950 * 359.97438 * 22 21 20 39 39 H 1.08002 * 125.20310 * 180.21047 * 23 22 21 40 40 H 1.08001 * 125.20239 * 0.02875 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4402 0.6999 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1373 -0.0005 9 16 3.7723 -1.2021 -0.0012 10 6 4.0867 -2.9845 -0.0009 11 6 5.5732 -3.2324 -0.0008 12 8 6.3441 -2.2962 -0.0014 13 7 6.0458 -4.4946 -0.0011 14 6 7.4908 -4.7357 -0.0016 15 6 7.7565 -6.2424 -0.0012 16 1 7.2395 -6.7024 0.8409 17 8 7.2781 -6.8107 -1.2220 18 6 9.2603 -6.4951 0.1240 19 7 9.5154 -7.9418 0.1237 20 6 10.9523 -8.2229 0.2434 21 6 11.1745 -9.7135 0.2403 22 6 11.1894 -10.4665 1.4016 23 6 11.3937 -11.7724 1.2222 24 16 11.5960 -12.1076 -0.4925 25 6 11.3773 -10.4062 -0.8815 26 1 -0.4850 0.8400 0.0004 27 1 3.6434 -3.4317 -0.8905 28 1 3.6441 -3.4313 0.8893 29 1 5.4292 -5.2434 -0.0018 30 1 7.9340 -4.2887 0.8884 31 1 7.9334 -4.2885 -0.8917 32 1 7.6955 -6.4475 -2.0151 33 1 9.7774 -6.0351 -0.7181 34 1 9.6253 -6.0616 1.0551 35 1 8.9952 -8.4008 0.8564 36 1 11.4815 -7.7745 -0.5974 37 1 11.3285 -7.8018 1.1758 38 1 11.0430 -10.0303 2.3788 39 1 11.4335 -12.5103 2.0098 40 1 11.4036 -9.9865 -1.8762 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496948030.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:04 Heat of formation + Delta-G solvation = -55.149079 kcal Electronic energy + Delta-G solvation = -21801.468435 eV Core-core repulsion = 18255.035853 eV Total energy + Delta-G solvation = -3546.432582 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 330.086 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.58702 -38.99023 -37.95385 -35.32143 -34.18142 -32.43477 -31.20781 -30.14909 -28.85912 -26.65404 -25.60543 -24.21824 -22.98337 -22.09595 -20.41348 -19.19829 -18.03317 -17.96768 -17.28133 -16.69511 -16.46861 -15.96776 -15.47518 -15.21903 -15.07658 -14.88800 -14.64715 -14.23846 -13.76231 -13.55779 -13.38446 -13.25277 -13.14961 -12.84978 -12.79048 -12.65878 -12.29365 -12.07776 -11.85979 -11.33432 -11.26689 -11.18252 -11.00775 -10.65186 -10.35639 -9.85434 -9.54537 -9.23815 -9.05227 -8.99836 -8.96862 -8.74654 -8.50199 -6.91730 -6.28491 -4.00358 0.59032 1.24445 1.56805 2.19886 2.74412 2.95786 3.24821 3.33383 3.50308 3.58443 3.83743 4.16332 4.33282 4.38376 4.45332 4.57065 4.60292 4.70807 4.78797 4.81840 4.95284 5.08425 5.10562 5.14098 5.20179 5.20844 5.27963 5.56427 5.59586 5.71114 5.78599 5.94725 6.01473 6.02937 6.40128 6.51563 6.85817 7.38699 7.60489 7.94585 8.42405 8.47257 9.17603 10.80739 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.046215 B = 0.001524 C = 0.001504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.720677 B =18368.842644 C =18609.073374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.236 1.236 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.143 6.143 10 C -0.124 4.124 11 C 0.531 3.469 12 O -0.522 6.522 13 N -0.731 5.731 14 C 0.091 3.909 15 C 0.101 3.899 16 H 0.103 0.897 17 O -0.544 6.544 18 C 0.028 3.972 19 N -0.673 5.673 20 C 0.118 3.882 21 C -0.106 4.106 22 C -0.131 4.131 23 C -0.213 4.213 24 S 0.093 5.907 25 C -0.186 4.186 26 H 0.271 0.729 27 H 0.098 0.902 28 H 0.097 0.903 29 H 0.404 0.596 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.376 0.624 33 H 0.081 0.919 34 H 0.044 0.956 35 H 0.344 0.656 36 H 0.081 0.919 37 H 0.040 0.960 38 H 0.138 0.862 39 H 0.163 0.837 40 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.426 -24.231 1.111 35.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.160 1.160 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.274 4.274 11 C 0.317 3.683 12 O -0.397 6.397 13 N -0.386 5.386 14 C -0.035 4.035 15 C 0.041 3.959 16 H 0.121 0.879 17 O -0.349 6.349 18 C -0.102 4.102 19 N -0.305 5.305 20 C -0.013 4.013 21 C -0.118 4.118 22 C -0.161 4.161 23 C -0.349 4.349 24 S 0.357 5.643 25 C -0.322 4.322 26 H 0.081 0.919 27 H 0.116 0.884 28 H 0.116 0.884 29 H 0.239 0.761 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.224 0.776 33 H 0.099 0.901 34 H 0.062 0.938 35 H 0.163 0.837 36 H 0.099 0.901 37 H 0.058 0.942 38 H 0.155 0.845 39 H 0.181 0.819 40 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 26.451 -24.282 -0.012 35.906 hybrid contribution -0.825 1.090 1.446 1.990 sum 25.626 -23.192 1.434 34.592 Atomic orbital electron populations 1.69942 1.05906 1.27748 1.48075 1.24712 0.94450 0.98948 0.93184 0.86730 0.81871 0.83288 0.79924 1.19211 1.19941 1.15965 1.22325 0.88260 0.97571 1.58771 0.89354 1.84763 1.09319 1.00127 1.97438 1.23272 0.93943 1.04306 1.05911 1.20304 0.90643 0.82226 0.75165 1.90696 1.58809 1.42271 1.47953 1.45824 1.07012 1.08222 1.77498 1.21930 0.82787 0.95647 1.03092 1.22093 0.93194 0.91552 0.89076 0.87903 1.86612 1.66744 1.66475 1.15094 1.22611 0.96663 0.89156 1.01774 1.60393 1.07067 1.09115 1.53880 1.20580 0.89369 0.90344 1.01005 1.18784 1.04139 0.96765 0.92152 1.20100 1.03549 0.93118 0.99360 1.25584 1.10145 0.99981 0.99174 1.84373 1.70736 1.07798 1.01401 1.25521 1.08275 0.95844 1.02587 0.91948 0.88389 0.88442 0.76133 0.90852 0.91178 0.77619 0.90092 0.93817 0.83750 0.90078 0.94179 0.84463 0.81906 0.81730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.62 13.97 55.49 0.78 -25.84 16 2 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 3 Si 0.86 21.82 27.74 -169.99 -4.71 17.10 16 4 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.24 -5.98 6.74 56.52 0.38 -5.60 16 7 C -0.52 -15.10 10.04 30.94 0.31 -14.79 16 8 H 0.09 2.66 8.03 -52.48 -0.42 2.24 16 9 S -0.14 -3.63 18.55 -107.50 -1.99 -5.62 16 10 C -0.12 -2.40 6.16 36.01 0.22 -2.18 16 11 C 0.53 9.33 7.85 -10.98 -0.09 9.24 16 12 O -0.52 -11.14 15.86 5.56 0.09 -11.05 16 13 N -0.73 -9.06 5.50 -60.29 -0.33 -9.40 16 14 C 0.09 0.89 5.31 -4.04 -0.02 0.87 16 15 C 0.10 0.73 3.21 -26.73 -0.09 0.65 16 16 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 17 O -0.54 -4.66 13.15 -35.23 -0.46 -5.12 16 18 C 0.03 0.17 5.35 -3.82 -0.02 0.15 16 19 N -0.67 -4.36 6.36 -115.06 -0.73 -5.09 16 20 C 0.12 0.69 5.94 -4.97 -0.03 0.66 16 21 C -0.11 -0.70 5.31 -106.25 -0.56 -1.27 16 22 C -0.13 -0.81 9.98 -41.21 -0.41 -1.22 16 23 C -0.21 -1.27 11.23 29.04 0.33 -0.95 16 24 S 0.09 0.58 23.34 -107.50 -2.51 -1.93 16 25 C -0.19 -1.25 10.98 29.04 0.32 -0.93 16 26 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 27 H 0.10 1.78 8.14 -51.92 -0.42 1.36 16 28 H 0.10 1.76 8.14 -51.92 -0.42 1.33 16 29 H 0.40 4.23 8.47 -40.82 -0.35 3.88 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.38 2.37 9.05 45.56 0.41 2.78 16 33 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.34 2.23 8.72 -39.29 -0.34 1.88 16 36 H 0.08 0.46 8.12 -51.93 -0.42 0.04 16 37 H 0.04 0.21 8.13 -51.93 -0.42 -0.21 16 38 H 0.14 0.66 8.06 -52.48 -0.42 0.24 16 39 H 0.16 0.65 8.06 -52.49 -0.42 0.23 16 40 H 0.17 0.93 8.06 -52.49 -0.42 0.50 16 LS Contribution 372.26 15.07 5.61 5.61 Total: -1.00 -34.95 372.26 -9.33 -44.28 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -4.93 Total: 4.11 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: -0.14 Total: -7.05 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: -0.29 Total: -40.33 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: -0.38 Total: -16.18 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.71 Total: 17.10 kcal Atomic # 16 Polarization: -3.05 SS G_CDS: -4.50 Total: -7.55 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.95 -9.33 -44.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496948030.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.867 kcal (2) G-P(sol) polarization free energy of solvation -34.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds