Wall clock time and date at job start Tue Mar 31 2020 06:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99715 * 2 1 4 4 H 1.48499 * 109.47349 * 264.98306 * 3 2 1 5 5 H 1.48500 * 109.47169 * 24.98779 * 3 2 1 6 6 H 1.48499 * 109.46786 * 144.98471 * 3 2 1 7 7 C 1.37872 * 119.99817 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99666 * 185.16594 * 7 2 1 9 9 C 1.50696 * 120.00324 * 5.16915 * 7 2 1 10 10 O 1.42891 * 110.89073 * 59.46063 * 9 7 2 11 11 C 1.55160 * 111.00455 * 183.34668 * 9 7 2 12 12 C 1.54326 * 102.93981 * 153.61097 * 11 9 7 13 13 N 1.47027 * 107.27415 * 337.80715 * 12 11 9 14 14 C 1.34773 * 125.64611 * 178.98073 * 13 12 11 15 15 O 1.21521 * 119.99412 * 179.97438 * 14 13 12 16 16 C 1.48171 * 120.00591 * 359.97438 * 14 13 12 17 17 C 1.39113 * 119.67230 * 179.73342 * 16 14 13 18 18 C 1.39688 * 118.91707 * 179.75483 * 17 16 14 19 19 C 1.48455 * 120.86299 * 180.23520 * 18 17 16 20 20 N 1.34049 * 126.67931 * 0.29969 * 19 18 17 21 21 N 1.28976 * 107.27363 * 180.02562 * 20 19 18 22 22 N 1.28737 * 108.94237 * 359.97438 * 21 20 19 23 23 H 0.97003 * 125.33520 * 180.02562 * 22 21 20 24 24 N 1.28874 * 109.31756 * 359.72755 * 22 21 20 25 25 C 1.39685 * 118.26743 * 0.50587 * 18 17 16 26 26 C 1.38335 * 119.21697 * 359.72562 * 25 18 17 27 27 N 1.31569 * 121.02755 * 0.03315 * 26 25 18 28 28 C 1.47529 * 108.71254 * 358.94046 * 13 12 11 29 29 H 0.97004 * 120.00275 * 0.02562 * 1 2 3 30 30 H 0.96700 * 114.00352 * 294.09185 * 10 9 7 31 31 H 1.08994 * 110.71711 * 271.97246 * 11 9 7 32 32 H 1.08999 * 110.71918 * 35.25314 * 11 9 7 33 33 H 1.09001 * 109.88138 * 97.22545 * 12 11 9 34 34 H 1.09001 * 109.87910 * 218.23402 * 12 11 9 35 35 H 1.07997 * 120.53904 * 359.97438 * 17 16 14 36 36 H 1.07998 * 120.39375 * 179.71085 * 25 18 17 37 37 H 1.07998 * 119.48805 * 180.02562 * 26 25 18 38 38 H 1.08993 * 110.36909 * 265.30777 * 28 13 12 39 39 H 1.08997 * 110.40302 * 142.95324 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6026 1.9853 -1.3947 5 1 1.3975 2.6809 0.5914 6 1 3.4896 1.4731 0.8034 7 6 2.0045 -1.1940 -0.0005 8 1 3.0812 -1.1959 0.0837 9 6 1.2556 -2.4964 -0.1187 10 8 0.5059 -2.5446 -1.3341 11 6 2.2224 -3.7054 -0.0133 12 6 1.3124 -4.8297 0.5248 13 7 0.1686 -4.1860 1.1875 14 6 -0.8635 -4.8268 1.7710 15 8 -1.7580 -4.1898 2.2915 16 6 -0.9076 -6.3079 1.7781 17 6 -1.9734 -6.9622 2.3872 18 6 -2.0017 -8.3588 2.3801 19 6 -3.1209 -9.1011 3.0128 20 7 -4.1864 -8.5705 3.6293 21 7 -4.9191 -9.5498 4.0385 22 7 -4.3584 -10.6594 3.7042 23 1 -4.7078 -11.5441 3.8941 24 7 -3.2633 -10.4102 3.0722 25 6 -0.9466 -9.0387 1.7672 26 6 0.0787 -8.3128 1.1880 27 7 0.0733 -6.9972 1.2075 28 6 0.3382 -2.7226 1.1089 29 1 -0.4851 0.8401 -0.0004 30 1 -0.2132 -1.8996 -1.3786 31 1 2.6205 -3.9674 -0.9935 32 1 3.0295 -3.4937 0.6881 33 1 0.9619 -5.4497 -0.3004 34 1 1.8623 -5.4412 1.2402 35 1 -2.7678 -6.3996 2.8549 36 1 -0.9313 -10.1184 1.7459 37 1 0.8965 -8.8340 0.7126 38 1 0.8157 -2.3469 2.0138 39 1 -0.6253 -2.2361 0.9573 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592674496.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:19 Heat of formation + Delta-G solvation = 93.984081 kcal Electronic energy + Delta-G solvation = -27311.861507 eV Core-core repulsion = 23258.284505 eV Total energy + Delta-G solvation = -4053.577003 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.123 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.85258 -40.61640 -38.86746 -37.09216 -35.08313 -34.40393 -34.07736 -32.17995 -31.82686 -31.59430 -29.98768 -27.73386 -25.96586 -25.39334 -24.98424 -23.64328 -22.81784 -21.99638 -19.95827 -19.61401 -19.13032 -17.53192 -17.23555 -17.04867 -16.79517 -16.06318 -15.28493 -15.16108 -15.04891 -14.75674 -14.46203 -14.19011 -14.00167 -13.96386 -12.96426 -12.94846 -12.77537 -12.70890 -12.34101 -11.89307 -11.82629 -11.62205 -11.59311 -11.48008 -11.38681 -10.99041 -10.77074 -10.49217 -10.41850 -10.15118 -10.00526 -9.67034 -9.36461 -9.35086 -9.23378 -8.64538 -8.30772 -7.73081 -6.23094 -4.31886 0.23267 0.66057 0.84350 1.82284 1.98896 3.04397 3.14872 3.24882 3.32048 3.33885 3.49271 3.79470 3.93029 4.18374 4.31767 4.64466 4.74018 4.77531 4.84664 5.03433 5.05648 5.21425 5.56174 5.59602 5.62931 5.83940 5.89094 5.95745 5.97610 6.18588 6.29865 6.48734 6.62076 6.81376 6.94940 7.03254 7.28684 7.39298 7.63566 7.74767 7.78894 8.08430 8.22089 8.66186 8.72267 9.35135 9.41441 10.84029 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.028675 B = 0.002582 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.236551 B =10840.094685 C =11542.326804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.072 3.928 3 Si 0.903 3.097 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.536 4.536 8 H 0.066 0.934 9 C 0.248 3.752 10 O -0.580 6.580 11 C -0.124 4.124 12 C 0.122 3.878 13 N -0.585 5.585 14 C 0.568 3.432 15 O -0.542 6.542 16 C 0.100 3.900 17 C -0.075 4.075 18 C 0.017 3.983 19 C 0.218 3.782 20 N -0.256 5.256 21 N -0.045 5.045 22 N -0.226 5.226 23 H 0.477 0.523 24 N -0.286 5.286 25 C -0.121 4.121 26 C 0.098 3.902 27 N -0.436 5.436 28 C 0.092 3.908 29 H 0.270 0.730 30 H 0.379 0.621 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.161 0.839 36 H 0.147 0.853 37 H 0.170 0.830 38 H 0.065 0.935 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.597 -22.773 4.922 23.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.132 4.132 3 Si 0.730 3.270 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.574 4.574 8 H 0.085 0.915 9 C 0.208 3.792 10 O -0.388 6.388 11 C -0.162 4.162 12 C -0.001 4.001 13 N -0.315 5.315 14 C 0.353 3.647 15 O -0.420 6.420 16 C -0.039 4.039 17 C -0.098 4.098 18 C 0.006 3.994 19 C -0.062 4.062 20 N -0.129 5.129 21 N -0.040 5.040 22 N -0.072 5.072 23 H 0.331 0.669 24 N -0.139 5.139 25 C -0.144 4.144 26 C -0.061 4.061 27 N -0.148 5.148 28 C -0.029 4.029 29 H 0.080 0.920 30 H 0.228 0.772 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.178 0.822 36 H 0.165 0.835 37 H 0.187 0.813 38 H 0.083 0.917 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.754 -22.364 5.045 23.231 hybrid contribution -0.529 0.178 0.470 0.729 sum -4.282 -22.186 5.514 23.259 Atomic orbital electron populations 1.69737 1.05976 1.27866 1.49473 1.25072 0.95018 0.99715 0.93382 0.86435 0.79696 0.82445 0.78392 1.20354 1.21137 1.19799 1.21450 0.93953 0.90202 1.51836 0.91539 1.19629 0.86931 0.91851 0.80801 1.86127 1.50102 1.62436 1.40184 1.22729 0.97614 0.95057 1.00789 1.22049 0.86603 0.95059 0.96394 1.48660 1.20665 1.09821 1.52325 1.17377 0.82281 0.84845 0.80155 1.90788 1.37550 1.66554 1.47129 1.21349 0.91122 0.95273 0.96137 1.22150 0.98930 0.92559 0.96130 1.17408 0.91236 0.91920 0.98822 1.23424 0.96178 0.86372 1.00209 1.76199 1.02609 1.21692 1.12361 1.78988 1.20258 0.88336 1.16411 1.47761 1.12996 1.11688 1.34776 0.66874 1.74897 1.05271 1.17512 1.16191 1.22343 0.93363 1.02031 0.96631 1.22861 0.97516 0.89321 0.96390 1.67941 1.24576 1.08994 1.13287 1.23447 1.02929 0.75659 1.00841 0.92042 0.77150 0.90793 0.90624 0.91312 0.91964 0.82172 0.83484 0.81260 0.91723 0.89325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.88 10.76 55.43 0.60 -23.28 16 2 C 0.07 1.87 5.31 -17.82 -0.09 1.77 16 3 Si 0.90 20.45 29.54 -169.99 -5.02 15.43 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 7 C -0.54 -13.95 8.25 -34.44 -0.28 -14.23 16 8 H 0.07 1.69 7.79 -52.49 -0.41 1.29 16 9 C 0.25 6.02 0.86 -89.62 -0.08 5.94 16 10 O -0.58 -14.81 13.14 -35.23 -0.46 -15.27 16 11 C -0.12 -2.49 6.13 -24.89 -0.15 -2.64 16 12 C 0.12 2.24 5.40 -3.06 -0.02 2.23 16 13 N -0.58 -12.39 3.33 -171.42 -0.57 -12.96 16 14 C 0.57 11.74 7.84 -12.18 -0.10 11.64 16 15 O -0.54 -12.72 16.58 5.35 0.09 -12.63 16 16 C 0.10 1.63 6.72 -83.06 -0.56 1.08 16 17 C -0.07 -1.08 9.32 -38.72 -0.36 -1.44 16 18 C 0.02 0.20 5.91 -104.61 -0.62 -0.41 16 19 C 0.22 2.49 7.97 -156.30 -1.25 1.24 16 20 N -0.26 -3.22 12.33 32.15 0.40 -2.82 16 21 N -0.04 -0.44 13.47 60.35 0.81 0.37 16 22 N -0.23 -1.48 7.90 60.35 0.48 -1.00 16 23 H 0.48 0.64 8.96 -340.36 -3.05 -2.41 16 24 N -0.29 -2.54 12.17 32.17 0.39 -2.15 16 25 C -0.12 -1.13 9.80 -39.01 -0.38 -1.51 16 26 C 0.10 0.98 11.17 -17.63 -0.20 0.79 16 27 N -0.44 -6.17 6.83 -9.88 -0.07 -6.23 16 28 C 0.09 2.22 5.42 -2.47 -0.01 2.21 16 29 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 30 H 0.38 9.89 7.59 45.56 0.35 10.24 16 31 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 32 H 0.08 1.43 8.03 -51.93 -0.42 1.02 16 33 H 0.07 1.24 7.41 -51.93 -0.38 0.86 16 34 H 0.06 1.02 7.53 -51.93 -0.39 0.63 16 35 H 0.16 2.45 7.56 -52.49 -0.40 2.05 16 36 H 0.15 0.96 7.96 -52.49 -0.42 0.54 16 37 H 0.17 1.08 8.06 -52.49 -0.42 0.66 16 38 H 0.06 1.60 8.03 -51.93 -0.42 1.19 16 39 H 0.09 2.38 7.36 -51.93 -0.38 2.00 16 LS Contribution 340.17 15.07 5.13 5.13 Total: -1.00 -32.55 340.17 -8.23 -40.78 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -5.90 Total: 8.00 kcal Atomic # 6 Polarization: 10.75 SS G_CDS: -4.10 Total: 6.66 kcal Atomic # 7 Polarization: -50.12 SS G_CDS: 2.04 Total: -48.08 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -0.37 Total: -27.91 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.55 -8.23 -40.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592674496.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.762 kcal (2) G-P(sol) polarization free energy of solvation -32.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds