Wall clock time and date at job start Tue Mar 31 2020 06:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 119.99571 * 2 1 4 4 H 1.48504 * 109.46784 * 269.99629 * 3 2 1 5 5 H 1.48490 * 109.47277 * 29.99916 * 3 2 1 6 6 H 1.48500 * 109.46684 * 150.00048 * 3 2 1 7 7 C 1.37876 * 120.00309 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99790 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99841 * 359.97438 * 7 2 1 10 10 O 1.42903 * 110.88725 * 303.88170 * 9 7 2 11 11 C 1.55153 * 111.00282 * 179.97438 * 9 7 2 12 12 C 1.54323 * 102.94181 * 206.38514 * 11 9 7 13 13 N 1.47031 * 107.27071 * 22.19813 * 12 11 9 14 14 C 1.34775 * 125.64785 * 181.02174 * 13 12 11 15 15 O 1.21508 * 119.99988 * 180.02562 * 14 13 12 16 16 C 1.48175 * 120.00127 * 0.02562 * 14 13 12 17 17 C 1.39107 * 119.67151 * 180.25590 * 16 14 13 18 18 C 1.39683 * 118.92484 * 180.26935 * 17 16 14 19 19 C 1.48449 * 120.87275 * 179.75906 * 18 17 16 20 20 N 1.34048 * 126.67434 * 359.40445 * 19 18 17 21 21 N 1.28983 * 107.27180 * 180.26314 * 20 19 18 22 22 N 1.28727 * 108.94403 * 0.02562 * 21 20 19 23 23 H 0.97006 * 125.34692 * 180.02562 * 22 21 20 24 24 N 1.28871 * 109.32153 * 359.97438 * 22 21 20 25 25 C 1.39691 * 118.26022 * 359.48575 * 18 17 16 26 26 C 1.38338 * 119.21858 * 0.25078 * 25 18 17 27 27 N 1.31564 * 121.02206 * 0.02562 * 26 25 18 28 28 C 1.47419 * 108.70060 * 1.28209 * 13 12 11 29 29 H 0.96995 * 120.00332 * 359.97438 * 1 2 3 30 30 H 0.96703 * 113.99855 * 56.12113 * 10 9 7 31 31 H 1.09005 * 110.71575 * 88.02424 * 11 9 7 32 32 H 1.08997 * 110.87372 * 324.81955 * 11 9 7 33 33 H 1.08996 * 109.88564 * 262.77554 * 12 11 9 34 34 H 1.09002 * 109.87824 * 141.60969 * 12 11 9 35 35 H 1.08003 * 120.54548 * 0.02766 * 17 16 14 36 36 H 1.08003 * 120.39372 * 180.26945 * 25 18 17 37 37 H 1.08001 * 119.48842 * 180.02562 * 26 25 18 38 38 H 1.09004 * 110.36834 * 94.48385 * 28 13 12 39 39 H 1.09001 * 110.36826 * 216.80724 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0001 9 6 1.2511 -2.4992 0.0017 10 8 0.3522 -2.5675 1.1105 11 6 2.2275 -3.7050 0.0015 12 6 1.3974 -4.8217 -0.6658 13 7 0.3454 -4.1691 -1.4589 14 6 -0.6018 -4.8018 -2.1793 15 8 -1.4247 -4.1579 -2.7995 16 6 -0.6397 -6.2826 -2.2150 17 6 -1.6171 -6.9286 -2.9650 18 6 -1.6419 -8.3251 -2.9831 19 6 -2.6689 -9.0587 -3.7645 20 7 -3.6521 -8.5197 -4.4993 21 7 -4.3261 -9.4935 -5.0103 22 7 -3.8075 -10.6074 -4.6266 23 1 -4.1278 -11.4896 -4.8720 24 7 -2.7953 -10.3669 -3.8660 25 6 -0.6713 -9.0133 -2.2512 26 6 0.2699 -8.2954 -1.5354 27 7 0.2625 -6.9797 -1.5347 28 6 0.5020 -2.7080 -1.3406 29 1 -0.4850 0.8400 0.0004 30 1 -0.2773 -1.8347 1.1522 31 1 2.4983 -3.9820 1.0204 32 1 3.1184 -3.4832 -0.5861 33 1 0.9467 -5.4554 0.0980 34 1 2.0356 -5.4193 -1.3168 35 1 -2.3474 -6.3597 -3.5213 36 1 -0.6557 -10.0932 -2.2444 37 1 1.0226 -8.8230 -0.9683 38 1 1.0924 -2.3213 -2.1713 39 1 -0.4737 -2.2231 -1.3095 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592674497.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:22 Heat of formation + Delta-G solvation = 93.585507 kcal Electronic energy + Delta-G solvation = -27301.942578 eV Core-core repulsion = 23248.348291 eV Total energy + Delta-G solvation = -4053.594286 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 330.123 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.85244 -40.61685 -38.86247 -37.07990 -35.08342 -34.40906 -34.09797 -32.11046 -31.82740 -31.59575 -29.98623 -27.77053 -25.96581 -25.39474 -24.98437 -23.64465 -22.81689 -21.99141 -19.95689 -19.59750 -19.12645 -17.53177 -17.27333 -17.06022 -16.81377 -16.05824 -15.28269 -15.14614 -15.02330 -14.79503 -14.47269 -14.16219 -14.00087 -13.93319 -12.98054 -12.94452 -12.76482 -12.70459 -12.33830 -11.89323 -11.83805 -11.62041 -11.56405 -11.48064 -11.41202 -11.02295 -10.74055 -10.47854 -10.44708 -10.15096 -10.00584 -9.66942 -9.35782 -9.35013 -9.26083 -8.64217 -8.33405 -7.71379 -6.25713 -4.35032 0.23370 0.66151 0.84436 1.82336 1.98987 3.04373 3.14887 3.22985 3.30676 3.33279 3.49156 3.79510 3.93090 4.18349 4.29835 4.64590 4.74116 4.77608 4.84784 5.01545 5.05670 5.21486 5.56278 5.60105 5.62897 5.84047 5.90307 5.96336 5.99825 6.17932 6.30135 6.49424 6.61669 6.81631 6.92917 7.03064 7.29740 7.38806 7.63689 7.74826 7.77970 8.03674 8.21777 8.65407 8.70085 9.34754 9.51019 10.81501 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.028528 B = 0.002577 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.246240 B =10861.727398 C =11544.563629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.070 3.930 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.067 0.933 9 C 0.250 3.750 10 O -0.583 6.583 11 C -0.124 4.124 12 C 0.122 3.878 13 N -0.583 5.583 14 C 0.568 3.432 15 O -0.542 6.542 16 C 0.100 3.900 17 C -0.075 4.075 18 C 0.017 3.983 19 C 0.218 3.782 20 N -0.256 5.256 21 N -0.045 5.045 22 N -0.226 5.226 23 H 0.477 0.523 24 N -0.287 5.287 25 C -0.121 4.121 26 C 0.098 3.902 27 N -0.436 5.436 28 C 0.090 3.910 29 H 0.271 0.729 30 H 0.385 0.615 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.161 0.839 36 H 0.147 0.853 37 H 0.170 0.830 38 H 0.064 0.936 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.646 -22.516 -5.980 23.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.133 4.133 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.574 4.574 8 H 0.086 0.914 9 C 0.209 3.791 10 O -0.393 6.393 11 C -0.162 4.162 12 C 0.000 4.000 13 N -0.313 5.313 14 C 0.354 3.646 15 O -0.421 6.421 16 C -0.039 4.039 17 C -0.098 4.098 18 C 0.006 3.994 19 C -0.062 4.062 20 N -0.129 5.129 21 N -0.040 5.040 22 N -0.072 5.072 23 H 0.331 0.669 24 N -0.139 5.139 25 C -0.144 4.144 26 C -0.061 4.061 27 N -0.148 5.148 28 C -0.031 4.031 29 H 0.081 0.919 30 H 0.238 0.762 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.178 0.822 36 H 0.165 0.835 37 H 0.187 0.813 38 H 0.082 0.918 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.861 -22.164 -6.140 23.176 hybrid contribution -0.416 0.235 -0.577 0.749 sum -3.277 -21.929 -6.717 23.168 Atomic orbital electron populations 1.69566 1.06014 1.27978 1.49892 1.25092 0.95036 0.99785 0.93383 0.86391 0.79775 0.82401 0.78261 1.20430 1.21017 1.19696 1.21513 0.93720 0.90089 1.52118 0.91443 1.19623 0.85765 0.91825 0.81919 1.86075 1.51071 1.52960 1.49206 1.22733 0.97912 0.95235 1.00363 1.22054 0.88818 0.95002 0.94174 1.48583 1.28109 1.09735 1.44854 1.17377 0.81738 0.84896 0.80623 1.90782 1.39719 1.66127 1.45460 1.21336 0.92342 0.95241 0.94941 1.22147 0.98246 0.92637 0.96741 1.17406 0.93002 0.91971 0.97011 1.23423 0.97083 0.86310 0.99360 1.76201 1.04809 1.21837 1.10020 1.78987 1.19435 0.88289 1.17288 1.47758 1.17753 1.11633 1.30064 0.66872 1.74899 1.07637 1.17718 1.13623 1.22347 0.94106 1.02010 0.95902 1.22862 0.97274 0.89393 0.96549 1.67933 1.22046 1.08750 1.16062 1.23451 1.02761 0.76071 1.00811 0.91880 0.76249 0.90789 0.90690 0.91268 0.91986 0.82177 0.83480 0.81252 0.91775 0.89769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.91 10.72 55.43 0.59 -23.32 16 2 C 0.07 1.82 5.30 -17.82 -0.09 1.73 16 3 Si 0.90 20.34 29.54 -169.99 -5.02 15.32 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.54 -13.90 8.25 -34.44 -0.28 -14.19 16 8 H 0.07 1.71 7.76 -52.49 -0.41 1.30 16 9 C 0.25 6.08 0.89 -89.50 -0.08 6.00 16 10 O -0.58 -15.12 13.19 -35.23 -0.46 -15.58 16 11 C -0.12 -2.51 6.12 -24.90 -0.15 -2.66 16 12 C 0.12 2.26 5.39 -3.06 -0.02 2.25 16 13 N -0.58 -12.42 3.32 -171.36 -0.57 -12.99 16 14 C 0.57 11.79 7.84 -12.18 -0.10 11.69 16 15 O -0.54 -12.77 16.57 5.36 0.09 -12.68 16 16 C 0.10 1.64 6.72 -83.06 -0.56 1.09 16 17 C -0.07 -1.09 9.32 -38.72 -0.36 -1.45 16 18 C 0.02 0.20 5.91 -104.61 -0.62 -0.41 16 19 C 0.22 2.49 7.97 -156.30 -1.25 1.25 16 20 N -0.26 -3.22 12.33 32.15 0.40 -2.83 16 21 N -0.04 -0.45 13.47 60.35 0.81 0.37 16 22 N -0.23 -1.48 7.90 60.35 0.48 -1.00 16 23 H 0.48 0.65 8.96 -340.36 -3.05 -2.41 16 24 N -0.29 -2.55 12.17 32.17 0.39 -2.16 16 25 C -0.12 -1.13 9.80 -39.00 -0.38 -1.51 16 26 C 0.10 0.99 11.17 -17.63 -0.20 0.79 16 27 N -0.44 -6.19 6.83 -9.88 -0.07 -6.26 16 28 C 0.09 2.18 5.64 -2.41 -0.01 2.17 16 29 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 30 H 0.39 10.34 6.93 45.56 0.32 10.65 16 31 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 32 H 0.07 1.41 8.02 -51.93 -0.42 1.00 16 33 H 0.07 1.26 7.41 -51.93 -0.38 0.87 16 34 H 0.06 1.02 7.54 -51.93 -0.39 0.63 16 35 H 0.16 2.45 7.56 -52.48 -0.40 2.06 16 36 H 0.15 0.97 7.96 -52.48 -0.42 0.55 16 37 H 0.17 1.09 8.06 -52.49 -0.42 0.66 16 38 H 0.06 1.57 8.04 -51.93 -0.42 1.15 16 39 H 0.08 2.28 7.64 -51.93 -0.40 1.88 16 LS Contribution 340.01 15.07 5.12 5.12 Total: -1.00 -32.52 340.01 -8.28 -40.80 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -5.94 Total: 8.46 kcal Atomic # 6 Polarization: 10.84 SS G_CDS: -4.10 Total: 6.74 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: 2.03 Total: -48.18 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: -0.38 Total: -28.26 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.52 -8.28 -40.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592674497.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.386 kcal (2) G-P(sol) polarization free energy of solvation -32.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds