Wall clock time and date at job start Tue Mar 31 2020 05:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31298 * 1 3 3 Si 1.86799 * 120.00082 * 2 1 4 4 H 1.48504 * 109.46962 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46805 * 299.99491 * 3 2 1 6 6 H 1.48497 * 109.47658 * 59.99721 * 3 2 1 7 7 C 1.38988 * 119.99676 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99604 * 179.97438 * 7 2 1 9 9 N 1.37318 * 120.00193 * 0.02562 * 7 2 1 10 10 C 1.36492 * 126.06881 * 180.02562 * 9 7 2 11 11 C 1.35685 * 107.50687 * 180.02562 * 10 9 7 12 12 N 1.40594 * 126.07976 * 180.02562 * 11 10 9 13 13 C 1.34780 * 119.99880 * 179.97438 * 12 11 10 14 14 O 1.21303 * 119.99893 * 359.97438 * 13 12 11 15 15 C 1.50699 * 120.00054 * 179.97438 * 13 12 11 16 16 N 1.46501 * 109.47194 * 179.97438 * 15 13 12 17 17 C 1.34516 * 126.74558 * 124.97405 * 16 15 13 18 18 N 1.30684 * 108.28485 * 179.97438 * 17 16 15 19 19 C 1.33954 * 109.78120 * 0.02562 * 18 17 16 20 20 C 1.48484 * 125.64240 * 180.02562 * 19 18 17 21 21 N 1.34048 * 126.67142 * 180.02562 * 20 19 18 22 22 N 1.28981 * 107.27054 * 179.97438 * 21 20 19 23 23 N 1.28732 * 108.94140 * 0.02562 * 22 21 20 24 24 H 0.96997 * 125.34383 * 180.02562 * 23 22 21 25 25 N 1.28870 * 109.31728 * 359.74483 * 23 22 21 26 26 N 1.31465 * 108.70808 * 359.97438 * 19 18 17 27 27 C 1.40648 * 107.83829 * 0.25655 * 11 10 9 28 28 N 1.30914 * 108.38382 * 359.55553 * 27 11 10 29 29 H 0.96999 * 119.99685 * 0.02562 * 1 2 3 30 30 H 1.07991 * 126.24754 * 0.03513 * 10 9 7 31 31 H 0.96998 * 120.00443 * 359.97438 * 12 11 10 32 32 H 1.09001 * 109.47057 * 60.00041 * 15 13 12 33 33 H 1.08997 * 109.46963 * 299.99755 * 15 13 12 34 34 H 1.07995 * 125.85579 * 0.02562 * 17 16 15 35 35 H 1.07994 * 125.80974 * 179.69719 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 3.7070 1.3463 -0.0006 5 1 1.8883 2.3963 -1.2126 6 1 1.8883 2.3965 1.2124 7 6 2.0078 -1.2037 0.0005 8 1 3.0878 -1.2037 0.0001 9 7 1.3212 -2.3929 0.0005 10 6 1.8749 -3.6405 0.0015 11 6 0.8577 -4.5384 0.0006 12 7 0.9889 -5.9382 0.0016 13 6 -0.1103 -6.7182 0.0010 14 8 -1.2128 -6.2123 0.0000 15 6 0.0303 -8.2186 0.0015 16 7 -1.2993 -8.8337 0.0012 17 6 -1.7699 -9.7326 -0.8818 18 7 -2.9945 -10.0381 -0.5428 19 6 -3.3452 -9.3539 0.5541 20 6 -4.6596 -9.4338 1.2403 21 7 -5.0324 -8.7593 2.3371 22 7 -6.2433 -9.1103 2.6094 23 7 -6.6362 -9.9691 1.7346 24 1 -7.5100 -10.3897 1.7142 25 7 -5.6884 -10.1780 0.8867 26 7 -2.3328 -8.6009 0.9231 27 6 -0.3514 -3.8199 -0.0071 28 7 -0.0716 -2.5410 -0.0009 29 1 -0.4849 0.8401 -0.0004 30 1 2.9299 -3.8709 0.0030 31 1 1.8705 -6.3428 0.0028 32 1 0.5751 -8.5321 0.8920 33 1 0.5765 -8.5326 -0.8880 34 1 -1.2284 -10.1337 -1.7258 35 1 -1.3420 -4.2499 -0.0142 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606354119.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:44 Heat of formation + Delta-G solvation = 288.987760 kcal Electronic energy + Delta-G solvation = -25992.663230 eV Core-core repulsion = 21876.294629 eV Total energy + Delta-G solvation = -4116.368601 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.104 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.66155 -42.27479 -39.96913 -38.66413 -34.87133 -34.40828 -34.21909 -33.26398 -33.04431 -31.41792 -30.31146 -28.95236 -27.33580 -25.20082 -24.84932 -24.53713 -22.44243 -21.39591 -21.12544 -20.43108 -19.49449 -19.31498 -17.73383 -17.49872 -17.36897 -16.82310 -16.01950 -15.49553 -15.33472 -15.11984 -15.01072 -14.85835 -14.08591 -13.99160 -13.46969 -13.42791 -12.93591 -12.77418 -12.47478 -12.03521 -11.70888 -11.60850 -11.48062 -11.34024 -11.31690 -11.28769 -10.97101 -10.52507 -10.28364 -10.25177 -10.10424 -9.72093 -9.21836 -9.18807 -8.83435 -8.09255 -6.76721 -6.57878 -4.25893 0.73958 1.17478 1.68500 1.83294 2.14692 2.64935 2.97684 3.00690 3.03568 3.10011 3.13624 3.37291 3.62366 3.79121 3.84920 4.29905 4.36809 4.45869 4.60756 4.78887 4.86660 4.99950 5.01679 5.13335 5.25900 5.84033 5.98567 6.15434 6.19315 6.37198 6.48182 6.81849 6.91285 7.03780 7.19686 7.72406 7.82780 7.98719 8.05056 8.22516 8.54580 8.73869 9.34633 9.63786 10.38002 Molecular weight = 330.10amu Principal moments of inertia in cm(-1) A = 0.019848 B = 0.002305 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.374722 B =12146.420581 C =13303.649429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.045 3.955 3 Si 0.935 3.065 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.323 4.323 8 H 0.117 0.883 9 N -0.141 5.141 10 C -0.082 4.082 11 C -0.062 4.062 12 N -0.618 5.618 13 C 0.481 3.519 14 O -0.505 6.505 15 C 0.113 3.887 16 N -0.356 5.356 17 C 0.262 3.738 18 N -0.514 5.514 19 C 0.287 3.713 20 C 0.267 3.733 21 N -0.238 5.238 22 N -0.048 5.048 23 N -0.227 5.227 24 H 0.477 0.523 25 N -0.258 5.258 26 N -0.220 5.220 27 C -0.030 4.030 28 N -0.260 5.260 29 H 0.275 0.725 30 H 0.146 0.854 31 H 0.398 0.602 32 H 0.121 0.879 33 H 0.133 0.867 34 H 0.229 0.771 35 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.576 -20.923 -0.908 21.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.172 4.172 3 Si 0.759 3.241 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.455 4.455 8 H 0.135 0.865 9 N 0.091 4.909 10 C -0.234 4.234 11 C -0.168 4.168 12 N -0.262 5.262 13 C 0.264 3.736 14 O -0.379 6.379 15 C -0.013 4.013 16 N -0.148 5.148 17 C -0.034 4.034 18 N -0.241 5.241 19 C 0.004 3.996 20 C -0.016 4.016 21 N -0.113 5.113 22 N -0.043 5.043 23 N -0.074 5.074 24 H 0.332 0.668 25 N -0.112 5.112 26 N -0.051 5.051 27 C -0.205 4.205 28 N -0.091 5.091 29 H 0.086 0.914 30 H 0.164 0.836 31 H 0.231 0.769 32 H 0.139 0.861 33 H 0.151 0.849 34 H 0.245 0.755 35 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -3.610 -18.766 -0.013 19.110 hybrid contribution 1.357 -0.714 -0.624 1.656 sum -2.253 -19.480 -0.637 19.621 Atomic orbital electron populations 1.70228 1.06147 1.27963 1.35101 1.25662 0.95715 1.00334 0.95481 0.85757 0.79598 0.80238 0.78512 1.18675 1.19910 1.19876 1.19922 0.91675 0.80513 1.53410 0.86517 1.44580 1.04074 1.03348 1.38879 1.21237 0.96783 0.85354 1.19983 1.17195 0.94319 0.80838 1.24437 1.42320 1.07738 1.04721 1.71412 1.20064 0.85421 0.87782 0.80372 1.90730 1.25457 1.73766 1.47964 1.21674 0.79856 0.92977 1.06827 1.50047 1.12173 1.31890 1.20690 1.26113 0.90779 0.90635 0.95887 1.70440 1.12041 1.27800 1.13829 1.19562 0.90585 0.96079 0.93416 1.21318 0.91980 0.95207 0.93133 1.76291 1.02580 1.19830 1.12572 1.79018 1.06971 1.04484 1.13876 1.47815 1.15467 1.28497 1.15581 0.66787 1.75051 0.97383 1.22811 1.15998 1.78637 0.95692 1.18640 1.12122 1.24107 0.98005 0.90780 1.07632 1.78289 0.90080 1.15058 1.25693 0.91448 0.83635 0.76890 0.86097 0.84882 0.75493 0.80862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.54 11.81 55.50 0.66 -20.88 16 2 C 0.05 1.17 5.50 -17.50 -0.10 1.07 16 3 Si 0.94 18.83 29.55 -169.99 -5.02 13.80 16 4 H -0.26 -5.00 7.11 56.52 0.40 -4.59 16 5 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 6 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 7 C -0.32 -8.45 10.25 -14.82 -0.15 -8.60 16 8 H 0.12 2.71 7.83 -52.49 -0.41 2.30 16 9 N -0.14 -3.84 3.74 -11.41 -0.04 -3.88 16 10 C -0.08 -1.87 11.49 -16.39 -0.19 -2.06 16 11 C -0.06 -1.38 6.90 -83.84 -0.58 -1.96 16 12 N -0.62 -9.62 5.47 -10.00 -0.05 -9.67 16 13 C 0.48 7.43 7.84 -10.98 -0.09 7.34 16 14 O -0.51 -10.68 12.89 5.54 0.07 -10.61 16 15 C 0.11 1.00 7.03 -5.19 -0.04 0.96 16 16 N -0.36 -4.30 3.41 -63.83 -0.22 -4.52 16 17 C 0.26 2.59 12.61 -90.70 -1.14 1.45 16 18 N -0.51 -6.97 11.21 -12.37 -0.14 -7.11 16 19 C 0.29 4.50 8.08 -156.64 -1.27 3.24 16 20 C 0.27 4.03 8.31 -156.30 -1.30 2.73 16 21 N -0.24 -3.73 12.54 32.16 0.40 -3.32 16 22 N -0.05 -0.59 13.47 60.35 0.81 0.22 16 23 N -0.23 -2.01 7.90 60.35 0.48 -1.54 16 24 H 0.48 1.55 8.96 -340.38 -3.05 -1.50 16 25 N -0.26 -3.17 12.40 32.18 0.40 -2.77 16 26 N -0.22 -3.64 11.85 32.11 0.38 -3.26 16 27 C -0.03 -0.78 10.85 -17.03 -0.18 -0.97 16 28 N -0.26 -7.59 10.40 30.80 0.32 -7.27 16 29 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.15 2.69 8.06 -52.49 -0.42 2.26 16 31 H 0.40 4.18 8.83 -40.82 -0.36 3.82 16 32 H 0.12 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.13 0.47 8.09 -51.93 -0.42 0.05 16 34 H 0.23 0.86 8.06 -52.49 -0.42 0.44 16 35 H 0.17 4.64 5.92 -52.49 -0.31 4.33 16 LS Contribution 328.99 15.07 4.96 4.96 Total: -1.00 -41.64 328.99 -6.99 -48.63 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -4.96 Total: 3.98 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: -5.03 Total: 3.21 kcal Atomic # 7 Polarization: -66.97 SS G_CDS: 2.99 Total: -63.98 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.07 Total: -10.61 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.02 Total: 13.80 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -41.64 -6.99 -48.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606354119.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 337.615 kcal (2) G-P(sol) polarization free energy of solvation -41.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 295.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 288.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds