Wall clock time and date at job start Tue Mar 31 2020 06:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86794 * 120.00102 * 2 1 4 4 H 1.48500 * 109.47168 * 270.00152 * 3 2 1 5 5 H 1.48504 * 109.46990 * 29.99876 * 3 2 1 6 6 H 1.48502 * 109.47288 * 149.99729 * 3 2 1 7 7 C 1.38811 * 119.99814 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99975 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00152 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99830 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46915 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.47360 * 305.00643 * 11 10 9 13 13 O 1.42905 * 109.46812 * 65.00678 * 11 10 9 14 14 C 1.53002 * 109.46982 * 185.00350 * 11 10 9 15 15 N 1.46500 * 109.46766 * 180.02562 * 14 11 10 16 16 C 1.34776 * 119.99845 * 179.97438 * 15 14 11 17 17 O 1.21281 * 120.00227 * 0.02562 * 16 15 14 18 18 C 1.50701 * 120.00175 * 180.02562 * 16 15 14 19 19 O 1.42896 * 109.47417 * 180.02562 * 18 16 15 20 20 C 1.35890 * 117.00271 * 179.97438 * 19 18 16 21 21 C 1.38702 * 120.03068 * 359.72970 * 20 19 18 22 22 C 1.38381 * 119.97392 * 179.76389 * 21 20 19 23 23 F 1.35093 * 119.98876 * 180.25547 * 22 21 20 24 24 C 1.38461 * 120.02490 * 0.47964 * 22 21 20 25 25 C 1.38454 * 120.06285 * 359.77351 * 24 22 21 26 26 F 1.35094 * 119.98636 * 179.97438 * 25 24 22 27 27 C 1.38386 * 120.02859 * 359.97438 * 25 24 22 28 28 H 0.97004 * 119.99907 * 359.97438 * 1 2 3 29 29 H 0.96997 * 120.00059 * 0.02562 * 9 7 2 30 30 H 1.09000 * 109.46702 * 60.00897 * 10 9 7 31 31 H 1.08998 * 109.47819 * 300.00577 * 10 9 7 32 32 H 0.96691 * 114.00079 * 59.99598 * 13 11 10 33 33 H 1.09004 * 109.47059 * 299.99867 * 14 11 10 34 34 H 1.08992 * 109.47060 * 60.00351 * 14 11 10 35 35 H 0.96995 * 120.00424 * 0.02562 * 15 14 11 36 36 H 1.09000 * 109.47120 * 300.00617 * 18 16 15 37 37 H 1.09002 * 109.47060 * 60.00522 * 18 16 15 38 38 H 1.08005 * 120.01404 * 359.97438 * 21 20 19 39 39 H 1.07998 * 119.96560 * 179.74495 * 24 22 21 40 40 H 1.07994 * 120.01084 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0637 -4.8197 -0.0001 12 1 0.3792 -4.7130 0.8414 13 8 0.3220 -4.8115 -1.2216 14 6 1.8245 -6.1412 0.1257 15 7 0.8725 -7.2547 0.1245 16 6 1.3184 -8.5226 0.2255 17 8 2.5076 -8.7417 0.3180 18 6 0.3392 -9.6681 0.2237 19 8 1.0496 -10.9023 0.3413 20 6 0.3090 -12.0416 0.3558 21 6 -1.0732 -11.9722 0.2645 22 6 -1.8259 -13.1333 0.2744 23 9 -3.1719 -13.0663 0.1803 24 6 -1.2004 -14.3636 0.3855 25 6 0.1790 -14.4341 0.4821 26 9 0.7877 -15.6352 0.5909 27 6 0.9344 -13.2747 0.4671 28 1 -0.4850 0.8401 0.0004 29 1 0.3555 -2.3881 -0.0002 30 1 2.6845 -3.7145 0.8906 31 1 2.6848 -3.7146 -0.8893 32 1 0.8684 -4.9028 -2.0141 33 1 2.5090 -6.2479 -0.7159 34 1 2.3903 -6.1475 1.0573 35 1 -0.0786 -7.0796 0.0502 36 1 -0.3458 -9.5619 1.0649 37 1 -0.2262 -9.6613 -0.7083 38 1 -1.5617 -11.0124 0.1822 39 1 -1.7891 -15.2689 0.3974 40 1 2.0103 -13.3300 0.5428 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667939183.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:28 Heat of formation + Delta-G solvation = -172.073075 kcal Electronic energy + Delta-G solvation = -26281.995751 eV Core-core repulsion = 21733.899707 eV Total energy + Delta-G solvation = -4548.096044 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.122 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.57175 -49.54750 -40.94462 -39.71222 -37.90472 -37.37428 -34.56892 -34.09364 -31.56640 -31.25702 -30.77567 -29.82703 -28.21448 -25.32807 -23.57474 -23.34812 -22.56005 -21.56336 -20.70174 -19.48702 -18.31251 -17.48811 -17.20579 -17.08099 -17.04955 -16.86959 -16.43045 -16.28031 -16.07996 -15.90065 -15.83973 -15.36737 -14.86968 -14.64928 -14.50610 -14.41052 -13.82556 -13.59887 -13.07375 -12.98360 -12.84733 -12.57603 -12.49780 -12.36897 -12.24062 -11.94824 -11.45470 -11.01647 -10.85672 -10.73272 -10.28073 -10.20363 -9.87506 -9.60414 -9.43485 -9.34057 -9.04850 -8.95680 -6.99831 -5.81349 -3.11336 0.32921 0.48368 1.94212 2.24506 2.75995 3.06416 3.37617 3.40500 3.45741 3.47400 3.78028 4.14879 4.19484 4.29435 4.30975 4.45566 4.48519 4.49085 4.59344 4.63337 4.76854 5.11845 5.22519 5.30033 5.38099 5.46014 5.49723 5.52055 5.65784 5.84267 5.96628 6.07843 6.18841 6.43599 6.55730 6.58568 7.17570 7.63783 7.81035 7.89109 8.36637 9.48514 10.04100 10.39618 11.40913 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.033013 B = 0.001616 C = 0.001552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.942557 B =17320.300799 C =18040.005769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.012 4.012 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.246 4.246 8 H 0.070 0.930 9 N -0.726 5.726 10 C 0.127 3.873 11 C 0.089 3.911 12 H 0.106 0.894 13 O -0.553 6.553 14 C 0.091 3.909 15 N -0.715 5.715 16 C 0.514 3.486 17 O -0.519 6.519 18 C 0.036 3.964 19 O -0.276 6.276 20 C 0.193 3.807 21 C -0.260 4.260 22 C 0.174 3.826 23 F -0.125 7.125 24 C -0.231 4.231 25 C 0.173 3.827 26 F -0.123 7.123 27 C -0.196 4.196 28 H 0.256 0.744 29 H 0.388 0.612 30 H 0.029 0.971 31 H 0.024 0.976 32 H 0.374 0.626 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.407 0.593 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.150 0.850 39 H 0.151 0.849 40 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.879 -29.742 0.234 29.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.208 4.208 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.377 4.377 8 H 0.088 0.912 9 N -0.370 5.370 10 C -0.002 4.002 11 C 0.029 3.971 12 H 0.124 0.876 13 O -0.358 6.358 14 C -0.033 4.033 15 N -0.369 5.369 16 C 0.298 3.702 17 O -0.394 6.394 18 C -0.042 4.042 19 O -0.187 6.187 20 C 0.146 3.854 21 C -0.279 4.279 22 C 0.154 3.846 23 F -0.104 7.104 24 C -0.251 4.251 25 C 0.153 3.847 26 F -0.102 7.102 27 C -0.216 4.216 28 H 0.066 0.934 29 H 0.223 0.777 30 H 0.047 0.953 31 H 0.041 0.959 32 H 0.221 0.779 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.243 0.757 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.168 0.832 39 H 0.169 0.831 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -3.186 -29.704 0.738 29.883 hybrid contribution -0.200 0.863 -0.400 0.972 sum -3.386 -28.841 0.339 29.041 Atomic orbital electron populations 1.69673 1.05126 1.25745 1.57239 1.24763 0.95543 0.97769 1.02720 0.86172 0.78643 0.83683 0.77554 1.21656 1.21704 1.20725 1.19218 0.91025 0.84075 1.43343 0.91169 1.42226 1.06045 0.99373 1.89405 1.21198 0.93471 0.86540 0.98965 1.22417 0.94669 0.91689 0.88327 0.87580 1.86576 1.37552 1.96235 1.15427 1.22173 0.92068 0.85491 1.03568 1.45725 1.11629 1.04920 1.74591 1.19859 0.89191 0.83586 0.77609 1.90782 1.16489 1.84330 1.47753 1.22643 0.94771 0.82310 1.04485 1.86206 1.33865 1.11673 1.86978 1.18230 0.88604 0.86405 0.92164 1.21265 0.93282 0.99630 1.13762 1.16860 0.77166 0.92917 0.97619 1.91564 1.28734 1.97131 1.92947 1.20930 0.93824 0.98613 1.11719 1.16759 0.89526 0.80385 0.97999 1.91566 1.83270 1.42461 1.92878 1.20328 1.02246 0.88545 1.10467 0.93439 0.77730 0.95294 0.95859 0.77885 0.90733 0.90071 0.75724 0.88221 0.88172 0.83198 0.83141 0.82799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.84 13.06 55.49 0.72 -27.12 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 3 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.25 -6.76 9.99 -15.06 -0.15 -6.91 16 8 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 9 N -0.73 -17.75 5.55 -59.91 -0.33 -18.09 16 10 C 0.13 2.32 5.90 -4.04 -0.02 2.30 16 11 C 0.09 1.23 3.09 -26.73 -0.08 1.14 16 12 H 0.11 1.51 8.14 -51.93 -0.42 1.09 16 13 O -0.55 -7.80 13.03 -35.23 -0.46 -8.26 16 14 C 0.09 1.04 5.34 -4.04 -0.02 1.02 16 15 N -0.71 -6.74 5.45 -60.29 -0.33 -7.07 16 16 C 0.51 5.47 7.91 -10.99 -0.09 5.38 16 17 O -0.52 -7.94 16.50 -14.35 -0.24 -8.18 16 18 C 0.04 0.25 5.22 36.01 0.19 0.44 16 19 O -0.28 -2.62 9.67 -39.31 -0.38 -3.00 16 20 C 0.19 1.53 6.68 -39.24 -0.26 1.27 16 21 C -0.26 -1.71 9.01 -39.36 -0.35 -2.06 16 22 C 0.17 1.22 7.30 -39.45 -0.29 0.93 16 23 F -0.13 -0.96 17.27 2.25 0.04 -0.92 16 24 C -0.23 -1.53 10.00 -39.42 -0.39 -1.92 16 25 C 0.17 1.26 7.30 -39.45 -0.29 0.98 16 26 F -0.12 -0.97 17.27 2.25 0.04 -0.93 16 27 C -0.20 -1.51 9.96 -39.35 -0.39 -1.90 16 28 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 29 H 0.39 10.17 7.67 -40.82 -0.31 9.85 16 30 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.37 4.32 9.04 45.56 0.41 4.73 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.41 2.99 8.35 -40.82 -0.34 2.65 16 36 H 0.10 0.44 7.65 -51.93 -0.40 0.04 16 37 H 0.10 0.45 7.67 -51.93 -0.40 0.05 16 38 H 0.15 0.67 6.30 -52.48 -0.33 0.34 16 39 H 0.15 0.75 8.06 -52.49 -0.42 0.33 16 40 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 361.49 15.07 5.45 5.45 Total: -1.00 -34.35 361.49 -6.64 -40.98 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -3.87 Total: 9.79 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: -2.25 Total: 0.24 kcal Atomic # 7 Polarization: -52.33 SS G_CDS: 0.06 Total: -52.27 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: -1.08 Total: -19.44 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.08 Total: -1.84 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.35 -6.64 -40.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667939183.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.091 kcal (2) G-P(sol) polarization free energy of solvation -34.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds