Wall clock time and date at job start Tue Mar 31 2020 05:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46939 * 2 1 4 4 C 1.52996 * 109.47238 * 239.99819 * 2 1 3 5 5 N 1.46498 * 109.47059 * 64.99625 * 4 2 1 6 6 C 1.36943 * 119.99752 * 179.72430 * 5 4 2 7 7 H 1.08002 * 119.99793 * 0.27665 * 6 5 4 8 8 C 1.38811 * 120.00012 * 180.27737 * 6 5 4 9 9 N 1.31611 * 120.00081 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 119.99814 * 0.02562 * 8 6 5 11 11 H 1.48501 * 109.47483 * 90.00178 * 10 8 6 12 12 H 1.48498 * 109.47011 * 210.00042 * 10 8 6 13 13 H 1.48502 * 109.47495 * 329.99664 * 10 8 6 14 14 C 1.53003 * 109.47108 * 119.99256 * 2 1 3 15 15 N 1.46490 * 109.47559 * 295.00069 * 14 2 1 16 16 C 1.34773 * 120.00384 * 179.97438 * 15 14 2 17 17 O 1.21699 * 119.99954 * 0.02562 * 16 15 14 18 18 C 1.46662 * 120.00556 * 179.97438 * 16 15 14 19 19 C 1.36538 * 125.99024 * 180.02562 * 18 16 15 20 20 C 1.40366 * 106.70758 * 179.97438 * 19 18 16 21 21 C 1.35121 * 107.11453 * 0.02562 * 20 19 18 22 22 S 1.76206 * 125.61825 * 180.02562 * 21 20 19 23 23 C 1.81400 * 104.45119 * 89.99383 * 22 21 20 24 24 O 1.42098 * 104.27679 * 206.07065 * 22 21 20 25 25 O 1.42107 * 104.27319 * 333.92131 * 22 21 20 26 26 O 1.33930 * 108.76859 * 359.75177 * 21 20 19 27 27 H 1.08995 * 109.46988 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46786 * 300.00471 * 1 2 3 29 29 H 1.09001 * 109.47309 * 60.00201 * 1 2 3 30 30 H 1.09004 * 109.47066 * 304.99893 * 4 2 1 31 31 H 1.08994 * 109.46974 * 185.00040 * 4 2 1 32 32 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 33 33 H 0.97008 * 120.00329 * 179.97438 * 9 8 6 34 34 H 1.08998 * 109.46886 * 55.00501 * 14 2 1 35 35 H 1.09002 * 109.46923 * 174.99751 * 14 2 1 36 36 H 0.97002 * 120.00315 * 0.02562 * 15 14 2 37 37 H 1.08005 * 126.64354 * 359.95990 * 19 18 16 38 38 H 1.08003 * 126.43938 * 179.97438 * 20 19 18 39 39 H 1.08994 * 109.46920 * 60.00189 * 23 22 21 40 40 H 1.08998 * 109.47125 * 180.02562 * 23 22 21 41 41 H 1.08999 * 109.46854 * 300.00207 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6524 0.0353 -2.4423 6 6 2.0064 -0.4178 -3.6852 7 1 2.5675 -1.3351 -3.7860 8 6 1.6441 0.3020 -4.8155 9 7 1.9838 -0.1336 -6.0100 10 14 0.6743 1.8890 -4.6410 11 1 1.6138 3.0324 -4.5180 12 1 -0.1830 2.0794 -5.8385 13 1 -0.1791 1.8169 -3.4278 14 6 2.0400 -0.7211 1.2494 15 7 1.6525 0.0355 2.4424 16 6 1.9956 -0.4133 3.6660 17 8 2.6278 -1.4469 3.7798 18 6 1.6082 0.3445 4.8604 19 6 1.8899 0.0049 6.1525 20 6 1.3333 1.0062 6.9635 21 6 0.7431 1.9014 6.1413 22 16 -0.1063 3.3586 6.6512 23 6 1.1772 4.6399 6.6921 24 8 -1.0300 3.6113 5.6014 25 8 -0.5553 3.0604 7.9661 26 8 0.9152 1.5020 4.8746 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.6054 -1.7199 -1.2950 31 1 3.1263 -0.7995 -1.2055 32 1 1.1488 0.8593 -2.3518 33 1 1.7304 0.3692 -6.7999 34 1 1.6054 -1.7197 1.2953 35 1 3.1263 -0.7993 1.2057 36 1 1.1483 0.8592 2.3518 37 1 2.4353 -0.8657 6.4859 38 1 1.3692 1.0519 8.0420 39 1 1.6129 4.7494 5.6990 40 1 0.7354 5.5869 7.0018 41 1 1.9544 4.3530 7.4003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753632898.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:06 Heat of formation + Delta-G solvation = -71.355495 kcal Electronic energy + Delta-G solvation = -25315.490066 eV Core-core repulsion = 21325.601850 eV Total energy + Delta-G solvation = -3989.888216 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.113 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -43.32387 -39.89582 -37.79747 -37.14381 -36.64166 -34.77335 -33.80381 -32.67527 -31.10025 -30.45650 -30.11017 -26.94071 -25.93027 -23.98857 -22.71530 -21.95499 -20.98144 -20.28646 -19.96327 -18.99198 -18.05029 -17.43229 -17.39019 -16.50980 -16.46187 -16.26210 -15.57355 -15.05036 -14.56646 -14.45490 -14.35451 -13.98204 -13.93220 -13.86609 -13.69271 -13.58692 -13.26851 -12.78743 -12.74006 -12.67848 -12.52420 -12.27798 -12.17179 -11.69302 -11.49264 -11.11029 -10.89555 -10.80146 -10.79861 -10.69708 -10.47838 -10.13760 -9.76752 -9.60703 -9.34898 -8.92994 -7.26497 -5.78968 -3.15031 -0.77057 0.12293 1.42052 1.78743 2.25948 2.68365 2.82347 3.16009 3.34768 3.37068 3.43374 3.57408 4.10771 4.14351 4.20726 4.34217 4.56562 4.73413 4.73967 4.91575 4.98899 4.99378 5.05828 5.16004 5.50876 5.54223 5.58220 5.67570 5.72847 5.76663 5.90322 5.99751 6.12957 6.21002 6.42428 6.59371 6.68728 7.05378 7.64261 7.96875 8.39732 9.18433 9.90510 10.09851 11.39372 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.017055 B = 0.002356 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.379603 B =11882.975662 C =13170.386822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 H 0.078 0.922 4 C 0.166 3.834 5 N -0.754 5.754 6 C -0.245 4.245 7 H 0.091 0.909 8 C 0.004 3.996 9 N -0.934 5.934 10 Si 0.885 3.115 11 H -0.284 1.284 12 H -0.291 1.291 13 H -0.277 1.277 14 C 0.124 3.876 15 N -0.708 5.708 16 C 0.594 3.406 17 O -0.509 6.509 18 C -0.016 4.016 19 C -0.147 4.147 20 C -0.097 4.097 21 C -0.547 4.547 22 S 2.529 3.471 23 C -0.643 4.643 24 O -0.915 6.915 25 O -0.915 6.915 26 O -0.108 6.108 27 H 0.059 0.941 28 H 0.046 0.954 29 H 0.066 0.934 30 H 0.032 0.968 31 H 0.031 0.969 32 H 0.361 0.639 33 H 0.260 0.740 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.408 0.592 37 H 0.173 0.827 38 H 0.176 0.824 39 H 0.138 0.862 40 H 0.141 0.859 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.163 8.891 32.014 33.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.135 4.135 3 H 0.096 0.904 4 C 0.038 3.962 5 N -0.400 5.400 6 C -0.375 4.375 7 H 0.108 0.892 8 C -0.192 4.192 9 N -0.581 5.581 10 Si 0.715 3.285 11 H -0.211 1.211 12 H -0.217 1.217 13 H -0.203 1.203 14 C 0.001 3.999 15 N -0.358 5.358 16 C 0.378 3.622 17 O -0.386 6.386 18 C -0.073 4.073 19 C -0.168 4.168 20 C -0.117 4.117 21 C -0.678 4.678 22 S 2.701 3.299 23 C -0.794 4.794 24 O -0.912 6.912 25 O -0.912 6.912 26 O -0.001 6.001 27 H 0.078 0.922 28 H 0.065 0.935 29 H 0.085 0.915 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.194 0.806 33 H 0.070 0.930 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.244 0.756 37 H 0.191 0.809 38 H 0.194 0.806 39 H 0.157 0.843 40 H 0.159 0.841 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.560 8.143 31.749 32.814 hybrid contribution 0.008 1.214 -0.058 1.215 sum -1.551 9.356 31.691 33.080 Atomic orbital electron populations 1.21849 0.94542 1.02449 1.01557 1.21635 0.96863 1.00666 0.94348 0.90351 1.20541 0.97222 0.94261 0.84196 1.42681 1.67590 1.27410 1.02342 1.19054 1.29485 1.07183 0.81751 0.89164 1.24679 1.00734 0.98668 0.95103 1.69699 1.51232 1.40234 0.96974 0.86546 0.80235 0.84771 0.76913 1.21095 1.21696 1.20328 1.21580 1.00799 0.95440 0.82090 1.46046 1.56217 1.27972 1.05607 1.16514 0.80316 0.84143 0.81255 1.90933 1.39723 1.22502 1.85448 1.22977 0.98938 0.88246 0.97101 1.22189 1.02482 1.01558 0.90550 1.21984 0.95144 0.92863 1.01737 1.35777 1.21875 1.22935 0.87169 1.05149 0.75643 0.74469 0.74670 1.30185 1.18949 1.17426 1.12851 1.93641 1.57131 1.83866 1.56558 1.93659 1.77191 1.83322 1.37033 1.84203 1.56439 1.33116 1.26349 0.92232 0.93523 0.91525 0.95048 0.95155 0.80583 0.93024 0.90393 0.90374 0.75623 0.80916 0.80632 0.84309 0.84107 0.84548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 8.94 37.16 0.33 -1.64 16 2 C -0.12 -1.60 2.46 -90.62 -0.22 -1.82 16 3 H 0.08 1.05 8.14 -51.92 -0.42 0.63 16 4 C 0.17 3.02 5.65 -4.04 -0.02 3.00 16 5 N -0.75 -17.42 5.13 -59.91 -0.31 -17.72 16 6 C -0.24 -6.88 10.47 -15.06 -0.16 -7.03 16 7 H 0.09 2.72 8.06 -52.49 -0.42 2.29 16 8 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 9 N -0.93 -29.26 13.97 55.49 0.78 -28.49 16 10 Si 0.89 21.85 27.74 -169.99 -4.71 17.14 16 11 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 12 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 13 H -0.28 -6.37 6.52 56.52 0.37 -6.00 16 14 C 0.12 1.50 5.06 -4.05 -0.02 1.48 16 15 N -0.71 -7.74 5.28 -61.63 -0.33 -8.07 16 16 C 0.59 7.14 7.79 -12.86 -0.10 7.04 16 17 O -0.51 -7.52 16.87 5.19 0.09 -7.43 16 18 C -0.02 -0.17 7.13 -36.80 -0.26 -0.43 16 19 C -0.15 -1.27 10.62 -39.39 -0.42 -1.69 16 20 C -0.10 -0.67 10.51 -39.89 -0.42 -1.09 16 21 C -0.55 -4.12 6.97 29.62 0.21 -3.92 16 22 S 2.53 13.78 5.95 -107.50 -0.64 13.14 16 23 C -0.64 -0.75 10.80 101.05 1.09 0.34 16 24 O -0.91 -8.82 17.95 -58.41 -1.05 -9.87 16 25 O -0.91 -7.19 17.70 -57.54 -1.02 -8.20 16 26 O -0.11 -1.03 10.40 5.01 0.05 -0.98 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.05 0.52 7.18 -51.93 -0.37 0.15 16 29 H 0.07 1.03 7.18 -51.93 -0.37 0.66 16 30 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.36 8.08 4.71 -40.82 -0.19 7.89 16 33 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 34 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.41 3.82 7.41 -40.82 -0.30 3.51 16 37 H 0.17 1.25 8.06 -52.48 -0.42 0.83 16 38 H 0.18 0.67 8.06 -52.48 -0.42 0.25 16 39 H 0.14 0.08 8.14 -51.93 -0.42 -0.35 16 40 H 0.14 -0.06 8.14 -51.92 -0.42 -0.48 16 41 H 0.14 -0.08 8.14 -51.92 -0.42 -0.50 16 LS Contribution 365.86 15.07 5.51 5.51 Total: -1.00 -38.91 365.86 -7.20 -46.11 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -5.48 Total: 4.59 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: -0.09 Total: -5.73 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: 0.14 Total: -54.28 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: -1.93 Total: -26.48 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.71 Total: 17.14 kcal Atomic # 16 Polarization: 13.78 SS G_CDS: -0.64 Total: 13.14 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -38.91 -7.20 -46.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753632898.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.247 kcal (2) G-P(sol) polarization free energy of solvation -38.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds