Wall clock time and date at job start Tue Mar 31 2020 05:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46939 * 2 1 4 4 C 1.52996 * 109.47238 * 239.99819 * 2 1 3 5 5 N 1.46498 * 109.47059 * 64.99625 * 4 2 1 6 6 C 1.36943 * 119.99752 * 179.72430 * 5 4 2 7 7 H 1.08002 * 119.99793 * 0.27665 * 6 5 4 8 8 C 1.38811 * 120.00012 * 180.27737 * 6 5 4 9 9 N 1.31611 * 120.00081 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 119.99814 * 0.02562 * 8 6 5 11 11 H 1.48501 * 109.47483 * 90.00178 * 10 8 6 12 12 H 1.48498 * 109.47011 * 210.00042 * 10 8 6 13 13 H 1.48502 * 109.47495 * 329.99664 * 10 8 6 14 14 C 1.53003 * 109.47108 * 119.99256 * 2 1 3 15 15 N 1.46490 * 109.47559 * 295.00069 * 14 2 1 16 16 C 1.34773 * 120.00384 * 179.97438 * 15 14 2 17 17 O 1.21699 * 119.99954 * 0.02562 * 16 15 14 18 18 C 1.46662 * 120.00556 * 179.97438 * 16 15 14 19 19 C 1.36538 * 125.99024 * 180.02562 * 18 16 15 20 20 C 1.40366 * 106.70758 * 179.97438 * 19 18 16 21 21 C 1.35121 * 107.11453 * 0.02562 * 20 19 18 22 22 S 1.76206 * 125.61825 * 180.02562 * 21 20 19 23 23 C 1.81400 * 104.45119 * 89.99383 * 22 21 20 24 24 O 1.42098 * 104.27679 * 206.07065 * 22 21 20 25 25 O 1.42107 * 104.27319 * 333.92131 * 22 21 20 26 26 O 1.33930 * 108.76859 * 359.75177 * 21 20 19 27 27 H 1.08995 * 109.46988 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46786 * 300.00471 * 1 2 3 29 29 H 1.09001 * 109.47309 * 60.00201 * 1 2 3 30 30 H 1.09004 * 109.47066 * 304.99893 * 4 2 1 31 31 H 1.08994 * 109.46974 * 185.00040 * 4 2 1 32 32 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 33 33 H 0.97008 * 120.00329 * 179.97438 * 9 8 6 34 34 H 1.08998 * 109.46886 * 55.00501 * 14 2 1 35 35 H 1.09002 * 109.46923 * 174.99751 * 14 2 1 36 36 H 0.97002 * 120.00315 * 0.02562 * 15 14 2 37 37 H 1.08005 * 126.64354 * 359.95990 * 19 18 16 38 38 H 1.08003 * 126.43938 * 179.97438 * 20 19 18 39 39 H 1.08994 * 109.46920 * 60.00189 * 23 22 21 40 40 H 1.08998 * 109.47125 * 180.02562 * 23 22 21 41 41 H 1.08999 * 109.46854 * 300.00207 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6524 0.0353 -2.4423 6 6 2.0064 -0.4178 -3.6852 7 1 2.5675 -1.3351 -3.7860 8 6 1.6441 0.3020 -4.8155 9 7 1.9838 -0.1336 -6.0100 10 14 0.6743 1.8890 -4.6410 11 1 1.6138 3.0324 -4.5180 12 1 -0.1830 2.0794 -5.8385 13 1 -0.1791 1.8169 -3.4278 14 6 2.0400 -0.7211 1.2494 15 7 1.6525 0.0355 2.4424 16 6 1.9956 -0.4133 3.6660 17 8 2.6278 -1.4469 3.7798 18 6 1.6082 0.3445 4.8604 19 6 1.8899 0.0049 6.1525 20 6 1.3333 1.0062 6.9635 21 6 0.7431 1.9014 6.1413 22 16 -0.1063 3.3586 6.6512 23 6 1.1772 4.6399 6.6921 24 8 -1.0300 3.6113 5.6014 25 8 -0.5553 3.0604 7.9661 26 8 0.9152 1.5020 4.8746 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.6054 -1.7199 -1.2950 31 1 3.1263 -0.7995 -1.2055 32 1 1.1488 0.8593 -2.3518 33 1 1.7304 0.3692 -6.7999 34 1 1.6054 -1.7197 1.2953 35 1 3.1263 -0.7993 1.2057 36 1 1.1483 0.8592 2.3518 37 1 2.4353 -0.8657 6.4859 38 1 1.3692 1.0519 8.0420 39 1 1.6129 4.7494 5.6990 40 1 0.7354 5.5869 7.0018 41 1 1.9544 4.3530 7.4003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753632898.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:04 Heat of formation + Delta-G solvation = -61.539979 kcal Electronic energy + Delta-G solvation = -25315.064433 eV Core-core repulsion = 21325.601850 eV Total energy + Delta-G solvation = -3989.462583 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.113 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.73548 -40.64927 -39.77640 -37.64541 -36.12713 -35.50161 -34.38888 -33.70949 -32.48670 -29.87542 -29.21345 -28.37643 -27.62502 -25.87727 -23.31925 -22.85990 -21.49720 -21.35697 -20.51644 -18.98391 -18.71762 -18.02031 -17.62857 -17.15948 -16.75499 -16.68675 -16.21902 -16.19262 -15.54603 -15.47997 -14.98163 -14.92878 -14.80511 -14.46499 -14.32510 -14.16361 -13.88024 -13.50892 -13.43197 -13.09893 -12.78901 -12.75531 -12.63029 -12.55635 -12.53773 -12.25531 -12.13326 -11.95217 -11.38500 -11.06919 -10.95582 -10.91050 -10.88593 -10.18472 -10.01015 -9.88926 -9.62957 -8.42248 -4.33754 -1.77223 0.49732 0.66189 0.76494 0.82490 1.20004 1.60202 1.84710 2.23358 2.51046 2.73360 2.92542 3.31673 3.39231 3.47993 3.70971 3.72234 3.79063 4.22433 4.26144 4.41187 4.45630 4.67950 4.71223 4.79379 4.82378 4.84152 4.86028 4.89528 4.94393 4.96158 5.18676 5.24467 5.41497 5.58874 5.62660 5.65729 5.77806 5.87424 5.96542 6.31218 6.68947 6.79690 7.44492 7.73980 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.017055 B = 0.002356 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.379603 B =11882.975662 C =13170.386822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.121 4.121 3 H 0.102 0.898 4 C 0.079 3.921 5 N -0.541 5.541 6 C 0.415 3.585 7 H 0.271 0.729 8 C -0.079 4.079 9 N -0.476 5.476 10 Si 0.929 3.071 11 H -0.239 1.239 12 H -0.239 1.239 13 H -0.220 1.220 14 C 0.122 3.878 15 N -0.730 5.730 16 C 0.609 3.391 17 O -0.600 6.600 18 C -0.277 4.277 19 C -0.125 4.125 20 C -0.316 4.316 21 C -0.439 4.439 22 S 1.963 4.037 23 C -0.709 4.709 24 O -1.105 7.105 25 O -1.120 7.120 26 O -0.185 6.185 27 H 0.078 0.922 28 H 0.031 0.969 29 H 0.087 0.913 30 H 0.163 0.837 31 H 0.164 0.836 32 H 0.428 0.572 33 H 0.381 0.619 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.403 0.597 37 H 0.128 0.872 38 H 0.094 0.906 39 H 0.044 0.956 40 H 0.017 0.983 41 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.707 -17.788 -68.203 71.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.140 4.140 3 H 0.120 0.880 4 C -0.041 4.041 5 N -0.134 5.134 6 C 0.232 3.768 7 H 0.287 0.713 8 C -0.320 4.320 9 N -0.101 5.101 10 Si 0.745 3.255 11 H -0.163 1.163 12 H -0.162 1.162 13 H -0.143 1.143 14 C 0.000 4.000 15 N -0.382 5.382 16 C 0.403 3.597 17 O -0.489 6.489 18 C -0.335 4.335 19 C -0.150 4.150 20 C -0.345 4.345 21 C -0.582 4.582 22 S 2.137 3.863 23 C -0.823 4.823 24 O -1.103 7.103 25 O -1.118 7.118 26 O -0.091 6.091 27 H 0.097 0.903 28 H 0.050 0.950 29 H 0.106 0.894 30 H 0.180 0.820 31 H 0.182 0.818 32 H 0.272 0.728 33 H 0.202 0.798 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.238 0.762 37 H 0.146 0.854 38 H 0.112 0.888 39 H 0.064 0.936 40 H 0.037 0.963 41 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 10.210 -17.742 -67.944 70.961 hybrid contribution -0.279 1.977 1.219 2.340 sum 9.931 -15.765 -66.725 69.277 Atomic orbital electron populations 1.22138 0.94171 1.03969 1.02772 1.21660 0.97030 1.02028 0.93234 0.87981 1.23028 1.06330 0.96777 0.77984 1.47503 1.35016 1.22780 1.08067 1.25641 0.75602 0.94384 0.81203 0.71332 1.27178 1.03882 1.06558 0.94404 1.69590 1.06070 1.31999 1.02419 0.85385 0.80132 0.74959 0.85015 1.16251 1.16188 1.14313 1.21437 1.00840 0.95400 0.82353 1.45588 1.59239 1.28518 1.04879 1.16117 0.78581 0.83222 0.81742 1.90584 1.45076 1.26164 1.87036 1.21677 1.21988 0.94621 0.95211 1.21517 1.00872 0.99411 0.93222 1.20750 1.14775 1.01436 0.97491 1.38230 1.31034 1.05946 0.83006 1.52295 0.88841 0.73965 0.71168 1.30553 1.28375 1.23770 0.99651 1.92433 1.73088 1.85812 1.58943 1.92492 1.87430 1.84557 1.47288 1.84003 1.61461 1.34588 1.29077 0.90336 0.95017 0.89400 0.81975 0.81822 0.72814 0.79826 0.90961 0.90300 0.76167 0.85440 0.88817 0.93633 0.96316 0.94449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.33 8.94 71.98 0.64 0.31 16 2 C -0.12 0.32 2.46 -10.79 -0.03 0.30 16 3 H 0.10 -0.26 8.14 -2.38 -0.02 -0.28 16 4 C 0.08 -1.64 5.65 86.38 0.49 -1.16 16 5 N -0.54 14.25 5.13 -343.46 -1.76 12.49 16 6 C 0.41 -13.26 10.47 84.03 0.88 -12.38 16 7 H 0.27 -11.05 8.06 -2.91 -0.02 -11.07 16 8 C -0.08 2.04 5.50 84.86 0.47 2.51 16 9 N -0.48 10.72 13.97 21.65 0.30 11.02 16 10 Si 0.93 -16.51 27.74 68.60 1.90 -14.60 16 11 H -0.24 3.01 7.11 99.48 0.71 3.72 16 12 H -0.24 3.08 7.11 99.48 0.71 3.79 16 13 H -0.22 3.77 6.52 99.48 0.65 4.42 16 14 C 0.12 1.68 5.06 86.38 0.44 2.12 16 15 N -0.73 -25.09 5.28 -467.11 -2.47 -27.55 16 16 C 0.61 31.25 7.79 86.44 0.67 31.92 16 17 O -0.60 -31.26 16.87 -4.35 -0.07 -31.34 16 18 C -0.28 -18.58 7.13 24.07 0.17 -18.40 16 19 C -0.12 -8.86 10.62 22.39 0.24 -8.62 16 20 C -0.32 -25.27 10.51 22.07 0.23 -25.03 16 21 C -0.44 -36.65 6.97 67.10 0.47 -36.18 16 22 S 1.96 171.73 5.95 -56.49 -0.34 171.40 16 23 C -0.71 -56.45 10.80 113.37 1.22 -55.23 16 24 O -1.11 -100.13 17.95 -126.82 -2.28 -102.41 16 25 O -1.12 -104.93 17.70 -127.65 -2.26 -107.19 16 26 O -0.18 -14.03 10.40 -5.00 -0.05 -14.08 16 27 H 0.08 0.04 8.14 -2.39 -0.02 0.03 16 28 H 0.03 0.47 7.18 -2.39 -0.02 0.46 16 29 H 0.09 -0.58 7.18 -2.39 -0.02 -0.60 16 30 H 0.16 -4.14 8.14 -2.38 -0.02 -4.16 16 31 H 0.16 -4.20 8.14 -2.39 -0.02 -4.22 16 32 H 0.43 -10.28 4.71 -92.71 -0.44 -10.71 16 33 H 0.38 -8.73 8.31 -92.70 -0.77 -9.50 16 34 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.40 14.35 7.41 -92.71 -0.69 13.67 16 37 H 0.13 8.12 8.06 -2.91 -0.02 8.10 16 38 H 0.09 7.47 8.06 -2.91 -0.02 7.45 16 39 H 0.04 3.40 8.14 -2.39 -0.02 3.38 16 40 H 0.02 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.04 2.86 8.14 -2.39 -0.02 2.84 16 Total: -1.00 -210.40 365.86 -1.24 -211.63 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -0.11 Total: 10.48 kcal Atomic # 6 Polarization: -125.74 SS G_CDS: 5.90 Total: -119.84 kcal Atomic # 7 Polarization: -0.12 SS G_CDS: -3.93 Total: -4.05 kcal Atomic # 8 Polarization: -250.36 SS G_CDS: -4.66 Total: -255.02 kcal Atomic # 14 Polarization: -16.51 SS G_CDS: 1.90 Total: -14.60 kcal Atomic # 16 Polarization: 171.73 SS G_CDS: -0.34 Total: 171.40 kcal Total: -210.40 -1.24 -211.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753632898.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.093 kcal (2) G-P(sol) polarization free energy of solvation -210.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -211.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds