Wall clock time and date at job start Tue Mar 31 2020 05:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47165 * 2 1 4 4 C 1.53001 * 109.46987 * 120.00172 * 2 1 3 5 5 N 1.46492 * 109.47169 * 295.00265 * 4 2 1 6 6 C 1.36942 * 120.00251 * 180.02562 * 5 4 2 7 7 H 1.07998 * 119.99876 * 359.97438 * 6 5 4 8 8 C 1.38810 * 119.99868 * 179.97438 * 6 5 4 9 9 N 1.31612 * 120.00281 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99595 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47104 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.46990 * 120.00001 * 10 8 6 13 13 H 1.48502 * 109.46786 * 239.99790 * 10 8 6 14 14 C 1.53005 * 109.47233 * 239.99901 * 2 1 3 15 15 N 1.46505 * 109.46904 * 65.00180 * 14 2 1 16 16 C 1.34773 * 120.00095 * 180.02562 * 15 14 2 17 17 O 1.21703 * 119.99823 * 359.97438 * 16 15 14 18 18 C 1.46651 * 119.99951 * 179.72488 * 16 15 14 19 19 C 1.36554 * 125.98356 * 180.27449 * 18 16 15 20 20 C 1.40364 * 106.70355 * 180.02562 * 19 18 16 21 21 C 1.35132 * 107.11651 * 359.97438 * 20 19 18 22 22 S 1.76204 * 125.61604 * 179.97438 * 21 20 19 23 23 C 1.81406 * 104.44634 * 90.00030 * 22 21 20 24 24 O 1.42092 * 104.27696 * 206.07199 * 22 21 20 25 25 O 1.42096 * 104.27780 * 333.93403 * 22 21 20 26 26 O 1.33929 * 108.76684 * 359.73749 * 21 20 19 27 27 H 1.09007 * 109.47102 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47517 * 299.99885 * 1 2 3 29 29 H 1.09002 * 109.46906 * 60.00255 * 1 2 3 30 30 H 1.09008 * 109.46959 * 55.00241 * 4 2 1 31 31 H 1.08999 * 109.47150 * 174.99672 * 4 2 1 32 32 H 0.97003 * 120.00109 * 359.97438 * 5 4 2 33 33 H 0.97006 * 119.99920 * 180.02562 * 9 8 6 34 34 H 1.09003 * 109.46832 * 305.00433 * 14 2 1 35 35 H 1.08993 * 109.47355 * 185.00283 * 14 2 1 36 36 H 0.97000 * 119.99792 * 359.97438 * 15 14 2 37 37 H 1.07998 * 126.65015 * 359.97438 * 19 18 16 38 38 H 1.08006 * 126.44048 * 179.97438 * 20 19 18 39 39 H 1.08999 * 109.46669 * 60.00141 * 23 22 21 40 40 H 1.09001 * 109.46581 * 179.97438 * 23 22 21 41 41 H 1.09001 * 109.47249 * 300.00174 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6524 0.0352 2.4423 6 6 2.0018 -0.4204 3.6855 7 1 2.5629 -1.3377 3.7864 8 6 1.6350 0.2967 4.8160 9 7 0.9517 1.4148 4.6930 10 14 2.1111 -0.3253 6.5119 11 1 2.8700 -1.5947 6.3785 12 1 2.9569 0.6886 7.1915 13 1 0.8843 -0.5644 7.3138 14 6 2.0401 -0.7213 -1.2493 15 7 1.6525 0.0354 -2.4424 16 6 1.9956 -0.4135 -3.6660 17 8 2.6278 -1.4472 -3.7797 18 6 1.6024 0.3408 -4.8606 19 6 1.8787 -0.0024 -6.1531 20 6 1.3179 0.9964 -6.9644 21 6 0.7309 1.8937 -6.1420 22 16 -0.1214 3.3490 -6.6523 23 6 -1.8420 2.8149 -6.8644 24 8 -0.0059 4.2298 -5.5432 25 8 0.4586 3.6726 -7.9084 26 8 0.8993 1.4920 -4.8755 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6053 -1.7199 1.2951 31 1 3.1263 -0.7996 1.2056 32 1 1.1488 0.8593 2.3517 33 1 0.6957 1.9162 5.4830 34 1 1.6053 -1.7198 -1.2952 35 1 3.1263 -0.7996 -1.2056 36 1 1.1483 0.8591 -2.3518 37 1 2.4238 -0.8731 -6.4866 38 1 1.3496 1.0396 -8.0431 39 1 -2.2226 2.4311 -5.9178 40 1 -2.4489 3.6625 -7.1828 41 1 -1.8884 2.0302 -7.6196 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753632899.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:10 Heat of formation + Delta-G solvation = -75.713424 kcal Electronic energy + Delta-G solvation = -25226.407507 eV Core-core repulsion = 21236.330317 eV Total energy + Delta-G solvation = -3990.077190 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.113 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -43.27059 -39.82345 -37.74889 -36.98986 -36.59142 -34.63045 -33.74619 -32.64150 -30.98066 -30.18241 -29.91074 -26.82029 -25.63558 -23.98025 -22.73465 -22.23024 -20.90933 -20.13910 -19.88467 -18.89116 -17.91922 -17.37712 -16.99073 -16.45198 -16.40904 -16.20639 -15.47734 -14.97039 -14.57494 -14.35618 -14.32945 -13.89155 -13.82420 -13.72215 -13.67756 -13.58711 -13.09259 -12.74014 -12.72898 -12.62778 -12.40550 -12.14844 -12.09204 -11.64229 -11.10985 -10.96462 -10.82875 -10.75047 -10.72161 -10.59238 -10.38904 -10.01186 -9.71446 -9.70839 -9.27370 -8.90091 -6.94407 -5.78576 -3.07311 -0.72038 0.17594 1.46964 1.84068 2.31522 2.74261 2.89336 3.21002 3.42703 3.48554 3.50690 3.62413 4.15276 4.19162 4.26394 4.39200 4.57082 4.78575 4.90824 4.97871 5.03182 5.10639 5.12434 5.30607 5.55657 5.59206 5.70471 5.83863 5.86736 5.97258 6.01965 6.15367 6.26809 6.35127 6.60880 6.72268 6.81087 7.13359 7.69340 7.71171 8.40340 9.51789 10.08556 10.43168 11.44405 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.019885 B = 0.002124 C = 0.001967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.761297 B =13179.245893 C =14233.438189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.112 4.112 3 H 0.079 0.921 4 C 0.161 3.839 5 N -0.731 5.731 6 C -0.239 4.239 7 H 0.071 0.929 8 C -0.015 4.015 9 N -0.933 5.933 10 Si 0.907 3.093 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.292 1.292 14 C 0.124 3.876 15 N -0.706 5.706 16 C 0.593 3.407 17 O -0.511 6.511 18 C -0.015 4.015 19 C -0.148 4.148 20 C -0.097 4.097 21 C -0.547 4.547 22 S 2.528 3.472 23 C -0.643 4.643 24 O -0.914 6.914 25 O -0.915 6.915 26 O -0.107 6.107 27 H 0.054 0.946 28 H 0.072 0.928 29 H 0.042 0.958 30 H 0.023 0.977 31 H 0.022 0.978 32 H 0.384 0.616 33 H 0.255 0.745 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.409 0.591 37 H 0.173 0.827 38 H 0.176 0.824 39 H 0.138 0.862 40 H 0.141 0.859 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.104 1.162 -29.208 29.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.132 4.132 3 H 0.098 0.902 4 C 0.033 3.967 5 N -0.376 5.376 6 C -0.370 4.370 7 H 0.089 0.911 8 C -0.210 4.210 9 N -0.582 5.582 10 Si 0.739 3.261 11 H -0.205 1.205 12 H -0.219 1.219 13 H -0.219 1.219 14 C 0.001 3.999 15 N -0.357 5.357 16 C 0.377 3.623 17 O -0.388 6.388 18 C -0.072 4.072 19 C -0.169 4.169 20 C -0.118 4.118 21 C -0.678 4.678 22 S 2.700 3.300 23 C -0.794 4.794 24 O -0.911 6.911 25 O -0.912 6.912 26 O 0.000 6.000 27 H 0.073 0.927 28 H 0.091 0.909 29 H 0.061 0.939 30 H 0.041 0.959 31 H 0.040 0.960 32 H 0.218 0.782 33 H 0.065 0.935 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.245 0.755 37 H 0.190 0.810 38 H 0.193 0.807 39 H 0.157 0.843 40 H 0.159 0.841 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.286 1.209 -28.925 29.428 hybrid contribution -0.294 -0.589 0.897 1.112 sum -5.579 0.620 -28.028 28.584 Atomic orbital electron populations 1.21814 0.94519 1.02013 1.01713 1.21587 0.96889 1.00723 0.93961 0.90216 1.20564 0.96663 0.94191 0.85274 1.42344 1.66953 1.27695 1.00569 1.19274 1.28681 1.05460 0.83600 0.91083 1.24745 1.00999 0.97397 0.97899 1.69664 1.43564 1.16566 1.28421 0.86108 0.77592 0.77837 0.84599 1.20543 1.21856 1.21873 1.21606 1.00703 0.95331 0.82296 1.46065 1.56083 1.27939 1.05585 1.16521 0.80343 0.84132 0.81290 1.90925 1.39801 1.22623 1.85492 1.22990 0.99488 0.87626 0.97078 1.22182 1.02548 1.01587 0.90557 1.21978 0.95952 0.92091 1.01760 1.35781 1.21993 1.22858 0.87142 1.05155 0.77533 0.72523 0.74753 1.30187 1.22369 1.13938 1.12920 1.93646 1.85556 1.59463 1.52435 1.93655 1.75939 1.79582 1.42073 1.84209 1.56244 1.33184 1.26369 0.92713 0.90900 0.93885 0.95918 0.96044 0.78158 0.93539 0.90595 0.90584 0.75542 0.80954 0.80662 0.84297 0.84108 0.84576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 8.94 37.16 0.33 -1.72 16 2 C -0.11 -1.68 2.46 -90.62 -0.22 -1.90 16 3 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 4 C 0.16 3.12 5.65 -4.05 -0.02 3.09 16 5 N -0.73 -18.10 5.33 -59.91 -0.32 -18.42 16 6 C -0.24 -6.64 9.99 -15.06 -0.15 -6.79 16 7 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 8 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 9 N -0.93 -28.04 13.06 55.49 0.72 -27.31 16 10 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 12 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 13 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 14 C 0.12 1.61 5.07 -4.04 -0.02 1.59 16 15 N -0.71 -8.29 5.28 -61.62 -0.33 -8.62 16 16 C 0.59 7.51 7.79 -12.87 -0.10 7.41 16 17 O -0.51 -7.83 16.87 5.19 0.09 -7.74 16 18 C -0.02 -0.17 7.13 -36.80 -0.26 -0.43 16 19 C -0.15 -1.34 10.62 -39.39 -0.42 -1.76 16 20 C -0.10 -0.71 10.51 -39.89 -0.42 -1.13 16 21 C -0.55 -4.39 6.97 29.63 0.21 -4.18 16 22 S 2.53 14.96 5.95 -107.50 -0.64 14.32 16 23 C -0.64 -0.98 10.80 101.05 1.09 0.11 16 24 O -0.91 -9.33 17.95 -58.41 -1.05 -10.38 16 25 O -0.92 -7.56 17.70 -57.54 -1.02 -8.58 16 26 O -0.11 -1.09 10.40 5.02 0.05 -1.03 16 27 H 0.05 0.77 8.14 -51.92 -0.42 0.35 16 28 H 0.07 1.23 7.18 -51.93 -0.37 0.86 16 29 H 0.04 0.50 7.18 -51.93 -0.37 0.13 16 30 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.38 9.92 6.85 -40.82 -0.28 9.64 16 33 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.41 4.20 7.41 -40.82 -0.30 3.89 16 37 H 0.17 1.32 8.06 -52.49 -0.42 0.89 16 38 H 0.18 0.73 8.06 -52.48 -0.42 0.31 16 39 H 0.14 0.13 8.14 -51.92 -0.42 -0.30 16 40 H 0.14 -0.01 8.14 -51.92 -0.42 -0.44 16 41 H 0.14 -0.04 8.14 -51.92 -0.42 -0.46 16 LS Contribution 368.97 15.07 5.56 5.56 Total: -1.00 -38.02 368.97 -7.56 -45.57 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -5.52 Total: 5.50 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: -0.08 Total: -6.23 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: 0.08 Total: -54.34 kcal Atomic # 8 Polarization: -25.80 SS G_CDS: -1.93 Total: -27.73 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Atomic # 16 Polarization: 14.96 SS G_CDS: -0.64 Total: 14.32 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -38.02 -7.56 -45.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753632899.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.141 kcal (2) G-P(sol) polarization free energy of solvation -38.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds