Wall clock time and date at job start Tue Mar 31 2020 04:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 120.00029 * 2 1 4 4 H 1.48498 * 109.46899 * 239.99851 * 3 2 1 5 5 H 1.48501 * 109.46803 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47216 * 120.00009 * 3 2 1 7 7 C 1.38815 * 119.99955 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00062 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99907 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99745 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46772 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.47395 * 60.00391 * 11 10 9 13 13 O 1.42903 * 109.47523 * 299.99927 * 11 10 9 14 14 C 1.53004 * 109.47023 * 179.97438 * 11 10 9 15 15 N 1.46499 * 109.47198 * 185.00121 * 14 11 10 16 16 C 1.34777 * 119.99665 * 180.27868 * 15 14 11 17 17 O 1.21283 * 119.99990 * 359.71991 * 16 15 14 18 18 C 1.50698 * 119.99538 * 179.72653 * 16 15 14 19 19 C 1.50698 * 109.46944 * 179.97438 * 18 16 15 20 20 C 1.38464 * 120.02309 * 89.99705 * 19 18 16 21 21 F 1.35099 * 120.01478 * 0.02562 * 20 19 18 22 22 C 1.38447 * 119.96637 * 179.97438 * 20 19 18 23 23 C 1.38233 * 119.99859 * 359.97438 * 22 20 19 24 24 C 1.38206 * 120.03690 * 0.02562 * 23 22 20 25 25 C 1.38297 * 120.02088 * 269.72113 * 19 18 16 26 26 Cl 1.73595 * 119.99556 * 0.02562 * 25 19 18 27 27 H 0.96996 * 119.99974 * 359.97438 * 1 2 3 28 28 H 0.96997 * 119.99907 * 359.97438 * 9 7 2 29 29 H 1.09005 * 109.46692 * 60.00089 * 10 9 7 30 30 H 1.08991 * 109.47156 * 299.99911 * 10 9 7 31 31 H 0.96706 * 113.99936 * 300.00702 * 13 11 10 32 32 H 1.09009 * 109.46730 * 64.99908 * 14 11 10 33 33 H 1.08998 * 109.46846 * 305.00453 * 14 11 10 34 34 H 0.97001 * 119.99790 * 359.97438 * 15 14 11 35 35 H 1.09003 * 109.47112 * 299.99065 * 18 16 15 36 36 H 1.08993 * 109.47916 * 59.99687 * 18 16 15 37 37 H 1.08000 * 120.00075 * 179.97438 * 22 20 19 38 38 H 1.07992 * 119.98076 * 180.02562 * 23 22 20 39 39 H 1.07998 * 119.97861 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0581 -3.6569 0.0005 11 6 1.0638 -4.8197 0.0012 12 1 0.4369 -4.7622 -0.8886 13 8 0.2427 -4.7438 1.1683 14 6 1.8288 -6.1448 0.0005 15 7 0.8813 -7.2557 -0.1193 16 6 1.3310 -8.5261 -0.1355 17 8 2.5204 -8.7494 -0.0560 18 6 0.3558 -9.6690 -0.2525 19 6 1.1089 -10.9743 -0.2482 20 6 1.3669 -11.6214 0.9485 21 9 0.9431 -11.0831 2.1129 22 6 2.0584 -12.8208 0.9510 23 6 2.4904 -13.3720 -0.2408 24 6 2.2329 -12.7262 -1.4352 25 6 1.5378 -11.5296 -1.4399 26 17 1.2092 -10.7225 -2.9413 27 1 -0.4850 0.8400 0.0004 28 1 0.3556 -2.3881 0.0005 29 1 2.6847 -3.7145 0.8906 30 1 2.6847 -3.7146 -0.8894 31 1 0.7351 -4.7889 1.9993 32 1 2.3873 -6.2423 0.9316 33 1 2.5204 -6.1646 -0.8417 34 1 -0.0700 -7.0770 -0.1825 35 1 -0.3350 -9.6450 0.5904 36 1 -0.2035 -9.5758 -1.1834 37 1 2.2603 -13.3257 1.8841 38 1 3.0294 -14.3078 -0.2385 39 1 2.5705 -13.1579 -2.3658 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753935430.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:51:02 Heat of formation + Delta-G solvation = -106.026011 kcal Electronic energy + Delta-G solvation = -24856.555968 eV Core-core repulsion = 20739.660314 eV Total energy + Delta-G solvation = -4116.895654 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.093 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.30982 -40.25342 -39.17286 -37.60040 -36.85854 -34.40533 -33.98392 -33.40610 -31.31447 -30.85648 -29.51073 -27.87743 -25.24466 -23.31181 -22.95500 -22.19062 -21.43445 -20.34857 -18.20862 -17.50938 -17.28117 -17.12497 -16.73727 -16.09708 -15.97753 -15.88501 -15.20143 -15.08843 -14.86374 -14.47887 -14.00389 -13.97670 -13.77920 -13.60910 -13.27493 -13.06976 -12.95274 -12.54043 -12.35691 -12.02838 -11.84774 -11.82245 -11.74929 -11.25904 -10.96405 -10.80875 -10.63178 -10.21379 -10.14956 -9.81872 -9.54386 -9.22868 -9.13472 -9.11002 -8.90411 -6.94665 -5.76489 -3.06307 0.54559 0.61119 1.63534 2.53176 2.85326 3.21912 3.44032 3.48213 3.49475 3.80722 4.02199 4.27753 4.38947 4.53369 4.64741 4.73169 4.74522 4.87236 4.93325 4.98888 5.16277 5.24731 5.42791 5.55018 5.56856 5.60637 5.62388 5.74130 5.79697 5.94581 6.18960 6.25945 6.36490 6.50239 6.66667 7.40653 7.67519 7.93334 8.12375 8.41723 9.53271 10.09772 10.45803 11.45754 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.025653 B = 0.002102 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.231001 B =13319.571648 C =13800.571185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.012 4.012 3 Si 0.909 3.091 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.245 4.245 8 H 0.069 0.931 9 N -0.725 5.725 10 C 0.127 3.873 11 C 0.089 3.911 12 H 0.104 0.896 13 O -0.552 6.552 14 C 0.091 3.909 15 N -0.719 5.719 16 C 0.518 3.482 17 O -0.535 6.535 18 C -0.111 4.111 19 C -0.090 4.090 20 C 0.125 3.875 21 F -0.129 7.129 22 C -0.149 4.149 23 C -0.079 4.079 24 C -0.120 4.120 25 C 0.003 3.997 26 Cl -0.051 7.051 27 H 0.256 0.744 28 H 0.389 0.611 29 H 0.023 0.977 30 H 0.028 0.972 31 H 0.374 0.626 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.405 0.595 35 H 0.111 0.889 36 H 0.113 0.887 37 H 0.143 0.857 38 H 0.143 0.857 39 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.617 -31.065 -1.470 31.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.209 4.209 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.376 4.376 8 H 0.087 0.913 9 N -0.371 5.371 10 C -0.002 4.002 11 C 0.029 3.971 12 H 0.122 0.878 13 O -0.357 6.357 14 C -0.034 4.034 15 N -0.371 5.371 16 C 0.303 3.697 17 O -0.411 6.411 18 C -0.151 4.151 19 C -0.092 4.092 20 C 0.106 3.894 21 F -0.107 7.107 22 C -0.168 4.168 23 C -0.098 4.098 24 C -0.139 4.139 25 C -0.024 4.024 26 Cl -0.022 7.022 27 H 0.066 0.934 28 H 0.224 0.776 29 H 0.040 0.960 30 H 0.046 0.954 31 H 0.221 0.779 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.240 0.760 35 H 0.129 0.871 36 H 0.132 0.868 37 H 0.160 0.840 38 H 0.161 0.839 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 1.081 -30.929 -1.953 31.009 hybrid contribution 0.140 1.214 0.432 1.296 sum 1.221 -29.715 -1.522 29.779 Atomic orbital electron populations 1.69667 1.05102 1.25805 1.57246 1.24767 0.95543 0.97736 1.02821 0.86248 0.78503 0.83434 0.77860 1.21236 1.21643 1.21240 1.19174 0.90964 0.84108 1.43314 0.91274 1.42224 1.06117 0.99343 1.89373 1.21191 0.93518 0.86625 0.98877 1.22384 0.93282 0.91735 0.89662 0.87787 1.86574 1.36991 1.96416 1.15707 1.22120 0.92347 0.85900 1.03004 1.45877 1.11314 1.05310 1.74637 1.20216 0.89330 0.83657 0.76506 1.90726 1.16706 1.84592 1.49107 1.20669 0.98095 0.89779 1.06522 1.19097 1.02125 0.96877 0.91124 1.17275 0.98213 0.93247 0.80695 1.91530 1.87708 1.85730 1.45769 1.21236 1.00023 0.95133 1.00385 1.20963 0.98166 0.99861 0.90765 1.21098 0.99068 0.93991 0.99741 1.20527 1.00369 0.94642 0.86885 1.98395 1.93806 1.79286 1.30737 0.93415 0.77636 0.95954 0.95380 0.77910 0.91057 0.90406 0.75963 0.87052 0.86844 0.83964 0.83929 0.84116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.43 13.06 55.49 0.72 -27.71 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.47 16 9 N -0.73 -18.43 5.49 -59.91 -0.33 -18.76 16 10 C 0.13 2.46 5.92 -4.04 -0.02 2.44 16 11 C 0.09 1.37 3.08 -26.73 -0.08 1.28 16 12 H 0.10 1.63 8.14 -51.93 -0.42 1.20 16 13 O -0.55 -8.74 13.03 -35.23 -0.46 -9.20 16 14 C 0.09 1.20 5.31 -4.04 -0.02 1.18 16 15 N -0.72 -8.40 5.50 -60.29 -0.33 -8.73 16 16 C 0.52 6.55 7.82 -10.99 -0.09 6.47 16 17 O -0.53 -8.75 16.03 5.55 0.09 -8.66 16 18 C -0.11 -1.06 5.26 -29.04 -0.15 -1.21 16 19 C -0.09 -0.92 4.38 -104.52 -0.46 -1.38 16 20 C 0.13 1.25 7.24 -39.42 -0.29 0.97 16 21 F -0.13 -1.41 16.48 2.25 0.04 -1.38 16 22 C -0.15 -1.13 10.03 -39.51 -0.40 -1.52 16 23 C -0.08 -0.49 10.04 -39.60 -0.40 -0.89 16 24 C -0.12 -0.88 9.83 -39.54 -0.39 -1.27 16 25 C 0.00 0.03 6.31 -39.51 -0.25 -0.22 16 26 Cl -0.05 -0.48 27.29 -51.86 -1.42 -1.90 16 27 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 28 H 0.39 10.56 7.54 -40.82 -0.31 10.26 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.37 5.01 9.05 45.56 0.41 5.42 16 32 H 0.07 0.97 8.14 -51.92 -0.42 0.54 16 33 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.41 3.99 8.47 -40.82 -0.35 3.65 16 35 H 0.11 0.88 7.64 -51.93 -0.40 0.49 16 36 H 0.11 0.90 6.89 -51.93 -0.36 0.54 16 37 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 38 H 0.14 0.45 8.06 -52.49 -0.42 0.02 16 39 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 LS Contribution 359.11 15.07 5.41 5.41 Total: -1.00 -34.77 359.11 -8.01 -42.78 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -3.92 Total: 12.30 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -2.79 Total: -1.67 kcal Atomic # 7 Polarization: -55.26 SS G_CDS: 0.06 Total: -55.20 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -0.37 Total: -17.87 kcal Atomic # 9 Polarization: -1.41 SS G_CDS: 0.04 Total: -1.38 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -1.42 Total: -1.90 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.77 -8.01 -42.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753935430.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.244 kcal (2) G-P(sol) polarization free energy of solvation -34.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds