Wall clock time and date at job start Tue Mar 31 2020 04:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 120.00029 * 2 1 4 4 H 1.48498 * 109.46899 * 239.99851 * 3 2 1 5 5 H 1.48501 * 109.46803 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47216 * 120.00009 * 3 2 1 7 7 C 1.38815 * 119.99955 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00062 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99907 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99745 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46772 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.47395 * 60.00391 * 11 10 9 13 13 O 1.42903 * 109.47523 * 299.99927 * 11 10 9 14 14 C 1.53004 * 109.47023 * 179.97438 * 11 10 9 15 15 N 1.46499 * 109.47198 * 185.00121 * 14 11 10 16 16 C 1.34777 * 119.99665 * 180.27868 * 15 14 11 17 17 O 1.21283 * 119.99990 * 359.71991 * 16 15 14 18 18 C 1.50698 * 119.99538 * 179.72653 * 16 15 14 19 19 C 1.50698 * 109.46944 * 179.97438 * 18 16 15 20 20 C 1.38464 * 120.02309 * 89.99705 * 19 18 16 21 21 F 1.35099 * 120.01478 * 0.02562 * 20 19 18 22 22 C 1.38447 * 119.96637 * 179.97438 * 20 19 18 23 23 C 1.38233 * 119.99859 * 359.97438 * 22 20 19 24 24 C 1.38206 * 120.03690 * 0.02562 * 23 22 20 25 25 C 1.38297 * 120.02088 * 269.72113 * 19 18 16 26 26 Cl 1.73595 * 119.99556 * 0.02562 * 25 19 18 27 27 H 0.96996 * 119.99974 * 359.97438 * 1 2 3 28 28 H 0.96997 * 119.99907 * 359.97438 * 9 7 2 29 29 H 1.09005 * 109.46692 * 60.00089 * 10 9 7 30 30 H 1.08991 * 109.47156 * 299.99911 * 10 9 7 31 31 H 0.96706 * 113.99936 * 300.00702 * 13 11 10 32 32 H 1.09009 * 109.46730 * 64.99908 * 14 11 10 33 33 H 1.08998 * 109.46846 * 305.00453 * 14 11 10 34 34 H 0.97001 * 119.99790 * 359.97438 * 15 14 11 35 35 H 1.09003 * 109.47112 * 299.99065 * 18 16 15 36 36 H 1.08993 * 109.47916 * 59.99687 * 18 16 15 37 37 H 1.08000 * 120.00075 * 179.97438 * 22 20 19 38 38 H 1.07992 * 119.98076 * 180.02562 * 23 22 20 39 39 H 1.07998 * 119.97861 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0581 -3.6569 0.0005 11 6 1.0638 -4.8197 0.0012 12 1 0.4369 -4.7622 -0.8886 13 8 0.2427 -4.7438 1.1683 14 6 1.8288 -6.1448 0.0005 15 7 0.8813 -7.2557 -0.1193 16 6 1.3310 -8.5261 -0.1355 17 8 2.5204 -8.7494 -0.0560 18 6 0.3558 -9.6690 -0.2525 19 6 1.1089 -10.9743 -0.2482 20 6 1.3669 -11.6214 0.9485 21 9 0.9431 -11.0831 2.1129 22 6 2.0584 -12.8208 0.9510 23 6 2.4904 -13.3720 -0.2408 24 6 2.2329 -12.7262 -1.4352 25 6 1.5378 -11.5296 -1.4399 26 17 1.2092 -10.7225 -2.9413 27 1 -0.4850 0.8400 0.0004 28 1 0.3556 -2.3881 0.0005 29 1 2.6847 -3.7145 0.8906 30 1 2.6847 -3.7146 -0.8894 31 1 0.7351 -4.7889 1.9993 32 1 2.3873 -6.2423 0.9316 33 1 2.5204 -6.1646 -0.8417 34 1 -0.0700 -7.0770 -0.1825 35 1 -0.3350 -9.6450 0.5904 36 1 -0.2035 -9.5758 -1.1834 37 1 2.2603 -13.3257 1.8841 38 1 3.0294 -14.3078 -0.2385 39 1 2.5705 -13.1579 -2.3658 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753935430.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:51:01 Heat of formation + Delta-G solvation = -132.121264 kcal Electronic energy + Delta-G solvation = -24857.687543 eV Core-core repulsion = 20739.660314 eV Total energy + Delta-G solvation = -4118.027229 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.093 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.04388 -41.14118 -39.96185 -38.89544 -37.52116 -36.08490 -35.31643 -34.11549 -33.19594 -31.44866 -30.84901 -28.87499 -26.82856 -24.52896 -23.91307 -23.12086 -22.77951 -21.37027 -19.27476 -18.87450 -18.39021 -17.96145 -17.82110 -17.19772 -16.93319 -16.67658 -16.44769 -16.15421 -15.96341 -15.75783 -15.47466 -14.96775 -14.73162 -14.62318 -14.43375 -14.23036 -14.01427 -13.91375 -13.50286 -13.16262 -12.96709 -12.72784 -12.67272 -12.47272 -12.39411 -12.21371 -11.99488 -11.92584 -11.81996 -11.26529 -10.99002 -10.88819 -10.17727 -9.88905 -9.74445 -9.02504 -7.95620 -5.25422 -0.05922 -0.00534 0.97858 1.46942 1.50153 1.54893 1.56380 2.03506 2.46282 2.56295 3.18524 3.34532 3.35120 3.45212 3.58386 3.66822 3.84109 3.87894 4.01934 4.18919 4.20506 4.32121 4.37002 4.39869 4.51786 4.59884 4.69766 4.84529 4.91401 5.01297 5.07608 5.18820 5.20086 5.32940 5.46833 5.69435 6.25269 6.45640 6.77047 7.15265 7.32517 8.07573 8.31228 9.27302 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.025653 B = 0.002102 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.231001 B =13319.571648 C =13800.571185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.076 4.076 3 Si 0.976 3.024 4 H -0.277 1.277 5 H -0.295 1.295 6 H -0.277 1.277 7 C -0.250 4.250 8 H 0.076 0.924 9 N -0.739 5.739 10 C 0.122 3.878 11 C 0.109 3.891 12 H 0.103 0.897 13 O -0.562 6.562 14 C 0.104 3.896 15 N -0.712 5.712 16 C 0.517 3.483 17 O -0.574 6.574 18 C -0.106 4.106 19 C -0.110 4.110 20 C 0.099 3.901 21 F -0.141 7.141 22 C -0.149 4.149 23 C -0.070 4.070 24 C -0.121 4.121 25 C -0.014 4.014 26 Cl -0.059 7.059 27 H 0.252 0.748 28 H 0.377 0.623 29 H 0.030 0.970 30 H 0.033 0.967 31 H 0.384 0.616 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.416 0.584 35 H 0.126 0.874 36 H 0.128 0.872 37 H 0.163 0.837 38 H 0.180 0.820 39 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.536 -32.748 -1.546 32.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.268 4.268 3 Si 0.804 3.196 4 H -0.203 1.203 5 H -0.221 1.221 6 H -0.203 1.203 7 C -0.382 4.382 8 H 0.094 0.906 9 N -0.383 5.383 10 C -0.005 4.005 11 C 0.049 3.951 12 H 0.121 0.879 13 O -0.369 6.369 14 C -0.021 4.021 15 N -0.364 5.364 16 C 0.304 3.696 17 O -0.453 6.453 18 C -0.145 4.145 19 C -0.112 4.112 20 C 0.079 3.921 21 F -0.120 7.120 22 C -0.168 4.168 23 C -0.088 4.088 24 C -0.140 4.140 25 C -0.041 4.041 26 Cl -0.030 7.030 27 H 0.060 0.940 28 H 0.210 0.790 29 H 0.047 0.953 30 H 0.051 0.949 31 H 0.233 0.767 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.253 0.747 35 H 0.144 0.856 36 H 0.146 0.854 37 H 0.181 0.819 38 H 0.197 0.803 39 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 2.012 -32.643 -2.025 32.767 hybrid contribution -0.093 1.614 0.462 1.681 sum 1.919 -31.029 -1.563 31.128 Atomic orbital electron populations 1.69828 1.06637 1.26209 1.59091 1.25616 0.96434 1.01236 1.03519 0.85184 0.77176 0.78991 0.78224 1.20319 1.22096 1.20347 1.19603 0.91493 0.85352 1.41764 0.90642 1.42401 1.05790 1.00694 1.89390 1.21394 0.94253 0.85827 0.99067 1.22090 0.92251 0.91152 0.89622 0.87941 1.86555 1.37529 1.96397 1.16369 1.21839 0.92138 0.85275 1.02881 1.45791 1.11637 1.04835 1.74148 1.20722 0.89289 0.84221 0.75341 1.90701 1.18506 1.85146 1.50975 1.20676 0.97524 0.88475 1.07849 1.19225 1.03092 0.97253 0.91665 1.17619 0.99627 0.94503 0.80319 1.91490 1.88063 1.86100 1.46340 1.21598 0.98941 0.94270 1.01987 1.21414 0.97054 1.00667 0.89632 1.21476 0.98038 0.93213 1.01251 1.20742 1.01362 0.95580 0.86429 1.98386 1.93941 1.79611 1.31050 0.93950 0.79024 0.95258 0.94924 0.76669 0.91122 0.90707 0.74746 0.85626 0.85388 0.81902 0.80251 0.82043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.85 13.06 21.65 0.28 -59.57 16 2 C -0.08 -4.38 5.50 84.86 0.47 -3.91 16 3 Si 0.98 46.36 29.55 68.60 2.03 48.39 16 4 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 5 H -0.29 -14.08 7.11 99.48 0.71 -13.38 16 6 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 7 C -0.25 -14.08 9.99 84.03 0.84 -13.24 16 8 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 9 N -0.74 -37.59 5.49 -343.44 -1.89 -39.48 16 10 C 0.12 4.67 5.92 86.38 0.51 5.18 16 11 C 0.11 3.25 3.08 30.59 0.09 3.34 16 12 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 13 O -0.56 -17.36 13.03 -148.98 -1.94 -19.30 16 14 C 0.10 2.66 5.31 86.38 0.46 3.11 16 15 N -0.71 -16.00 5.50 -463.05 -2.55 -18.55 16 16 C 0.52 12.82 7.82 87.66 0.69 13.50 16 17 O -0.57 -18.72 16.03 -3.04 -0.05 -18.77 16 18 C -0.11 -1.95 5.26 29.10 0.15 -1.80 16 19 C -0.11 -2.18 4.38 -19.80 -0.09 -2.27 16 20 C 0.10 1.91 7.24 22.37 0.16 2.07 16 21 F -0.14 -3.07 16.48 44.97 0.74 -2.33 16 22 C -0.15 -1.98 10.03 22.32 0.22 -1.75 16 23 C -0.07 -0.67 10.04 22.26 0.22 -0.45 16 24 C -0.12 -1.53 9.83 22.30 0.22 -1.31 16 25 C -0.01 -0.25 6.31 22.32 0.14 -0.11 16 26 Cl -0.06 -1.06 27.29 -2.72 -0.07 -1.14 16 27 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 28 H 0.38 20.72 7.54 -92.71 -0.70 20.02 16 29 H 0.03 1.10 8.14 -2.38 -0.02 1.08 16 30 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.38 9.95 9.05 -74.05 -0.67 9.29 16 32 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 33 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.42 7.70 8.47 -92.71 -0.79 6.92 16 35 H 0.13 1.90 7.64 -2.39 -0.02 1.88 16 36 H 0.13 1.91 6.89 -2.39 -0.02 1.90 16 37 H 0.16 1.36 8.06 -2.91 -0.02 1.34 16 38 H 0.18 0.35 8.06 -2.91 -0.02 0.33 16 39 H 0.16 1.27 8.06 -2.91 -0.02 1.25 16 Total: -1.00 -74.79 359.11 -0.39 -75.18 By element: Atomic # 1 Polarization: 34.23 SS G_CDS: -1.03 Total: 33.20 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: 4.09 Total: 2.36 kcal Atomic # 7 Polarization: -113.44 SS G_CDS: -4.15 Total: -117.59 kcal Atomic # 8 Polarization: -36.07 SS G_CDS: -1.99 Total: -38.06 kcal Atomic # 9 Polarization: -3.07 SS G_CDS: 0.74 Total: -2.33 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -0.07 Total: -1.14 kcal Total: -74.79 -0.39 -75.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753935430.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.945 kcal (2) G-P(sol) polarization free energy of solvation -74.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds