Wall clock time and date at job start Tue Mar 31 2020 06:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 120.00195 * 2 1 4 4 H 1.48497 * 109.47412 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46870 * 299.99989 * 3 2 1 6 6 H 1.48504 * 109.47000 * 59.99320 * 3 2 1 7 7 C 1.38818 * 119.99953 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99716 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00055 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00253 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47520 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.46832 * 305.00072 * 11 10 9 13 13 O 1.42905 * 109.46915 * 64.99755 * 11 10 9 14 14 C 1.52997 * 109.47232 * 184.99873 * 11 10 9 15 15 N 1.46496 * 109.47194 * 179.97438 * 14 11 10 16 16 C 1.34777 * 120.00271 * 179.97438 * 15 14 11 17 17 O 1.21278 * 119.99854 * 0.02562 * 16 15 14 18 18 C 1.50703 * 120.00161 * 180.02562 * 16 15 14 19 19 O 1.42898 * 109.47171 * 180.02562 * 18 16 15 20 20 C 1.35942 * 117.00418 * 180.02562 * 19 18 16 21 21 C 1.38716 * 120.02410 * 179.97438 * 20 19 18 22 22 C 1.38166 * 120.01588 * 179.97438 * 21 20 19 23 23 C 1.38410 * 120.05561 * 0.02562 * 22 21 20 24 24 F 1.35099 * 119.98166 * 179.97438 * 23 22 21 25 25 C 1.38658 * 120.03582 * 359.97438 * 23 22 21 26 26 F 1.35100 * 120.00194 * 180.02562 * 25 23 22 27 27 C 1.38351 * 119.98644 * 359.73027 * 25 23 22 28 28 H 0.97003 * 120.00162 * 0.02562 * 1 2 3 29 29 H 0.97009 * 120.00035 * 0.02562 * 9 7 2 30 30 H 1.09004 * 109.46930 * 59.99844 * 10 9 7 31 31 H 1.09002 * 109.46951 * 300.00474 * 10 9 7 32 32 H 0.96705 * 113.99792 * 60.00343 * 13 11 10 33 33 H 1.09002 * 109.47045 * 59.99942 * 14 11 10 34 34 H 1.09001 * 109.47375 * 299.99867 * 14 11 10 35 35 H 0.97005 * 120.00266 * 0.02562 * 15 14 11 36 36 H 1.09002 * 109.47152 * 60.00245 * 18 16 15 37 37 H 1.09001 * 109.46980 * 300.00345 * 18 16 15 38 38 H 1.08005 * 119.99242 * 359.97438 * 21 20 19 39 39 H 1.08002 * 119.97430 * 179.97438 * 22 21 20 40 40 H 1.08004 * 120.03273 * 180.29386 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8914 2.3963 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0017 11 6 1.0639 -4.8198 0.0008 12 1 0.3788 -4.7127 0.8418 13 8 0.3229 -4.8120 -1.2212 14 6 1.8245 -6.1412 0.1276 15 7 0.8725 -7.2546 0.1274 16 6 1.3183 -8.5224 0.2295 17 8 2.5075 -8.7415 0.3220 18 6 0.3390 -9.6679 0.2287 19 8 1.0494 -10.9021 0.3473 20 6 0.3086 -12.0418 0.3617 21 6 0.9341 -13.2748 0.4739 22 6 0.1810 -14.4331 0.4891 23 6 -1.1980 -14.3646 0.3919 24 9 -1.9329 -15.4981 0.4064 25 6 -1.8256 -13.1333 0.2796 26 9 -3.1716 -13.0672 0.1853 27 6 -1.0734 -11.9721 0.2704 28 1 -0.4850 0.8401 -0.0004 29 1 0.3555 -2.3881 -0.0002 30 1 2.6840 -3.7142 0.8922 31 1 2.6854 -3.7149 -0.8878 32 1 0.8699 -4.9036 -2.0134 33 1 2.3897 -6.1470 1.0597 34 1 2.5096 -6.2483 -0.7134 35 1 -0.0787 -7.0795 0.0530 36 1 -0.2264 -9.6619 -0.7032 37 1 -0.3459 -9.5610 1.0699 38 1 2.0101 -13.3295 0.5494 39 1 0.6687 -15.3928 0.5761 40 1 -1.5618 -11.0124 0.1878 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753946771.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:31 Heat of formation + Delta-G solvation = -171.166520 kcal Electronic energy + Delta-G solvation = -26319.245739 eV Core-core repulsion = 21771.189006 eV Total energy + Delta-G solvation = -4548.056733 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.122 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.91283 -48.97542 -40.94041 -39.72832 -37.92176 -37.38098 -34.56753 -34.09506 -31.60708 -31.43499 -30.74013 -29.60195 -28.13524 -25.34452 -23.85640 -23.11418 -22.58778 -21.56406 -20.70938 -19.31998 -18.30050 -18.04362 -17.28525 -17.11093 -17.08799 -16.93531 -16.62712 -16.25706 -15.92852 -15.44848 -15.38829 -15.00479 -14.67065 -14.65415 -14.51017 -14.39464 -13.81951 -13.65225 -13.52317 -13.08977 -13.00424 -12.60843 -12.54960 -12.38228 -11.95140 -11.88297 -11.40987 -11.01826 -10.87518 -10.73455 -10.27299 -10.17560 -9.87712 -9.71935 -9.60603 -9.33779 -8.96445 -8.76981 -6.99980 -5.81705 -3.11638 0.34096 0.43654 2.01729 2.24843 2.77255 3.15138 3.30158 3.39957 3.45712 3.47952 3.71470 3.97273 4.18516 4.27564 4.35928 4.47079 4.49143 4.49632 4.62516 4.76091 4.85364 5.10392 5.11752 5.24404 5.41098 5.47323 5.49537 5.51920 5.65656 5.84146 5.98128 6.07814 6.18785 6.43308 6.57977 6.58877 7.17854 7.64098 7.81011 7.89283 8.36243 9.48219 10.03860 10.39312 11.40642 Molecular weight = 330.12amu Principal moments of inertia in cm(-1) A = 0.034811 B = 0.001601 C = 0.001542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.157270 B =17483.395866 C =18158.747522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.012 4.012 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.245 4.245 8 H 0.071 0.929 9 N -0.726 5.726 10 C 0.127 3.873 11 C 0.089 3.911 12 H 0.106 0.894 13 O -0.553 6.553 14 C 0.091 3.909 15 N -0.715 5.715 16 C 0.514 3.486 17 O -0.519 6.519 18 C 0.036 3.964 19 O -0.278 6.278 20 C 0.155 3.845 21 C -0.129 4.129 22 C -0.083 4.083 23 C 0.026 3.974 24 F -0.130 7.130 25 C 0.112 3.888 26 F -0.124 7.124 27 C -0.224 4.224 28 H 0.255 0.745 29 H 0.388 0.612 30 H 0.029 0.971 31 H 0.024 0.976 32 H 0.374 0.626 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.407 0.593 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.153 0.847 39 H 0.155 0.845 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.275 -29.914 0.340 30.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.208 4.208 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.376 4.376 8 H 0.089 0.911 9 N -0.371 5.371 10 C -0.002 4.002 11 C 0.029 3.971 12 H 0.124 0.876 13 O -0.358 6.358 14 C -0.033 4.033 15 N -0.369 5.369 16 C 0.298 3.702 17 O -0.394 6.394 18 C -0.043 4.043 19 O -0.189 6.189 20 C 0.108 3.892 21 C -0.147 4.147 22 C -0.101 4.101 23 C 0.006 3.994 24 F -0.109 7.109 25 C 0.091 3.909 26 F -0.102 7.102 27 C -0.243 4.243 28 H 0.065 0.935 29 H 0.223 0.777 30 H 0.047 0.953 31 H 0.041 0.959 32 H 0.221 0.779 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.243 0.757 36 H 0.117 0.883 37 H 0.116 0.884 38 H 0.170 0.830 39 H 0.173 0.827 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -1.632 -29.877 0.832 29.933 hybrid contribution -0.510 0.927 -0.410 1.135 sum -2.142 -28.950 0.422 29.032 Atomic orbital electron populations 1.69683 1.05130 1.25638 1.57322 1.24767 0.95541 0.97777 1.02738 0.86103 0.78773 0.83972 0.77232 1.20522 1.21792 1.21799 1.19264 0.91059 0.84063 1.43213 0.91106 1.42235 1.06054 0.99386 1.89388 1.21198 0.93471 0.86540 0.98966 1.22415 0.94683 0.91697 0.88318 0.87588 1.86581 1.37550 1.96232 1.15424 1.22169 0.92068 0.85500 1.03554 1.45734 1.11624 1.04952 1.74587 1.19865 0.89196 0.83579 0.77571 1.90776 1.16493 1.84337 1.47788 1.22621 0.94780 0.82538 1.04340 1.86225 1.33754 1.11630 1.87318 1.18764 0.88757 0.87081 0.94554 1.20408 1.01743 0.88257 1.04322 1.20913 0.90592 1.00076 0.98560 1.17569 0.90047 0.81185 1.10583 1.91533 1.76855 1.48049 1.94419 1.17335 0.77717 0.92755 1.03045 1.91560 1.28292 1.97056 1.93294 1.21152 0.93307 0.98892 1.10979 0.93484 0.77732 0.95297 0.95851 0.77887 0.90087 0.90733 0.75734 0.88311 0.88360 0.82978 0.82725 0.82949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.86 13.06 55.49 0.72 -27.13 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 3 Si 0.91 22.11 29.55 -169.99 -5.02 17.08 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 7 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.73 -17.75 5.55 -59.91 -0.33 -18.08 16 10 C 0.13 2.32 5.90 -4.04 -0.02 2.30 16 11 C 0.09 1.22 3.09 -26.73 -0.08 1.14 16 12 H 0.11 1.51 8.14 -51.93 -0.42 1.09 16 13 O -0.55 -7.81 13.03 -35.23 -0.46 -8.27 16 14 C 0.09 1.04 5.34 -4.05 -0.02 1.02 16 15 N -0.72 -6.74 5.45 -60.30 -0.33 -7.07 16 16 C 0.51 5.43 7.91 -10.98 -0.09 5.35 16 17 O -0.52 -7.86 16.50 -14.35 -0.24 -8.10 16 18 C 0.04 0.25 5.22 36.01 0.19 0.44 16 19 O -0.28 -2.55 9.67 -39.47 -0.38 -2.93 16 20 C 0.16 1.16 6.68 -39.24 -0.26 0.90 16 21 C -0.13 -0.81 9.98 -39.43 -0.39 -1.20 16 22 C -0.08 -0.47 10.02 -39.54 -0.40 -0.87 16 23 C 0.03 0.21 7.30 -39.36 -0.29 -0.08 16 24 F -0.13 -1.17 17.18 2.25 0.04 -1.14 16 25 C 0.11 0.91 7.30 -39.38 -0.29 0.62 16 26 F -0.12 -1.15 17.18 2.25 0.04 -1.11 16 27 C -0.22 -1.52 9.01 -39.38 -0.35 -1.88 16 28 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 29 H 0.39 10.17 7.67 -40.82 -0.31 9.86 16 30 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.37 4.32 9.05 45.56 0.41 4.73 16 33 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.41 3.01 8.35 -40.82 -0.34 2.67 16 36 H 0.10 0.45 7.67 -51.93 -0.40 0.05 16 37 H 0.10 0.44 7.65 -51.93 -0.40 0.04 16 38 H 0.15 0.75 8.06 -52.48 -0.42 0.33 16 39 H 0.16 0.49 8.06 -52.49 -0.42 0.07 16 40 H 0.15 0.72 6.30 -52.48 -0.33 0.39 16 LS Contribution 361.38 15.07 5.45 5.45 Total: -1.00 -35.02 361.38 -6.64 -41.66 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -3.87 Total: 9.23 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: -2.26 Total: 0.42 kcal Atomic # 7 Polarization: -52.35 SS G_CDS: 0.06 Total: -52.28 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: -1.08 Total: -19.30 kcal Atomic # 9 Polarization: -2.33 SS G_CDS: 0.08 Total: -2.25 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.02 -6.64 -41.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753946771.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.509 kcal (2) G-P(sol) polarization free energy of solvation -35.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds