Wall clock time and date at job start Tue Mar 31 2020 04:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47160 * 2 1 4 4 C 1.53008 * 109.46996 * 240.00094 * 2 1 3 5 5 C 1.50695 * 109.46993 * 120.00461 * 2 1 3 6 6 C 1.38429 * 119.85549 * 59.99730 * 5 2 1 7 7 C 1.37899 * 120.15283 * 179.97438 * 6 5 2 8 8 C 1.39678 * 119.84931 * 359.97438 * 7 6 5 9 9 C 1.47954 * 120.15000 * 179.97438 * 8 7 6 10 10 C 1.37317 * 122.59230 * 180.02562 * 9 8 7 11 11 S 1.71018 * 108.93068 * 179.97438 * 10 9 8 12 12 C 1.75954 * 90.64722 * 0.02562 * 11 10 9 13 13 N 1.37417 * 125.19859 * 180.02562 * 12 11 10 14 14 C 1.34772 * 120.00291 * 359.96969 * 13 12 11 15 15 O 1.21967 * 119.99578 * 0.02562 * 14 13 12 16 16 C 1.40437 * 120.00557 * 180.02562 * 14 13 12 17 17 H 1.08004 * 119.99439 * 353.70688 * 16 14 13 18 18 C 1.40056 * 120.00624 * 173.70331 * 16 14 13 19 19 N 1.30686 * 119.99177 * 6.29764 * 18 16 14 20 20 Si 1.86791 * 120.00228 * 186.28932 * 18 16 14 21 21 H 1.48500 * 109.46925 * 94.98828 * 20 18 16 22 22 H 1.48501 * 109.47545 * 214.98372 * 20 18 16 23 23 H 1.48496 * 109.47482 * 334.98885 * 20 18 16 24 24 N 1.30359 * 109.60472 * 359.75502 * 12 11 10 25 25 C 1.39682 * 119.70320 * 0.25649 * 8 7 6 26 26 C 1.37907 * 119.84679 * 359.48962 * 25 8 7 27 27 H 1.08997 * 109.47286 * 300.00095 * 1 2 3 28 28 H 1.09007 * 109.46828 * 59.99903 * 1 2 3 29 29 H 1.08999 * 109.47177 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46917 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47335 * 299.99775 * 3 2 1 32 32 H 1.09001 * 109.46860 * 60.00254 * 3 2 1 33 33 H 1.08993 * 109.46716 * 299.99877 * 4 2 1 34 34 H 1.08997 * 109.46888 * 60.00037 * 4 2 1 35 35 H 1.08996 * 109.46525 * 180.02562 * 4 2 1 36 36 H 1.08001 * 119.91919 * 0.02562 * 6 5 2 37 37 H 1.07999 * 120.07873 * 180.02562 * 7 6 5 38 38 H 1.07998 * 125.53654 * 359.95830 * 10 9 8 39 39 H 0.97005 * 119.99638 * 179.97438 * 13 12 11 40 40 H 0.97006 * 119.99364 * 180.02562 * 19 18 16 41 41 H 1.07994 * 120.07315 * 179.74071 * 25 8 7 42 42 H 1.08001 * 119.92403 * 180.25158 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0323 -0.7105 1.2304 6 6 1.6960 -2.0358 1.4464 7 6 2.1527 -2.6921 2.5699 8 6 2.9568 -2.0166 3.4909 9 6 3.4500 -2.7141 4.6989 10 6 4.2424 -2.0989 5.6365 11 16 4.6052 -3.2186 6.8772 12 6 3.6647 -4.4604 6.0589 13 7 3.4859 -5.7455 6.5114 14 6 4.0551 -6.1380 7.6683 15 8 4.7284 -5.3523 8.3139 16 6 3.8728 -7.4515 8.1304 17 1 3.1960 -8.1165 7.6144 18 6 4.5688 -7.8993 9.2604 19 7 5.2917 -7.0623 9.9566 20 14 4.4635 -9.6927 9.7722 21 1 5.6157 -10.4379 9.2047 22 1 4.4943 -9.7872 11.2539 23 1 3.1968 -10.2787 9.2651 24 7 3.1587 -3.9732 4.9607 25 6 3.2884 -0.6780 3.2692 26 6 2.8292 -0.0352 2.1388 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1301 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 -1.7489 -1.2493 34 1 1.6766 -0.2074 -2.1392 35 1 3.1300 -0.7216 -1.2490 36 1 1.0752 -2.5572 0.7328 37 1 1.8899 -3.7262 2.7370 38 1 4.5816 -1.0743 5.5968 39 1 2.9501 -6.3703 5.9980 40 1 5.7740 -7.3726 10.7390 41 1 3.9063 -0.1488 3.9795 42 1 3.0882 0.9986 1.9642 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003887097.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:19 Heat of formation + Delta-G solvation = 11.084985 kcal Electronic energy + Delta-G solvation = -24265.589154 eV Core-core repulsion = 20722.417840 eV Total energy + Delta-G solvation = -3543.171314 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.114 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.96572 -38.97211 -37.88815 -36.13912 -33.73423 -32.67286 -31.15223 -30.47846 -28.16741 -27.57066 -27.44093 -26.99992 -24.48271 -22.69656 -21.89060 -20.63616 -19.88493 -19.13385 -17.75299 -17.01446 -16.28301 -15.83998 -15.71675 -14.98852 -14.60898 -14.51672 -14.39362 -14.32370 -14.20968 -13.67817 -13.35574 -13.02578 -13.00859 -12.64045 -12.45353 -12.27264 -12.03760 -12.03201 -11.88277 -11.59478 -11.38461 -11.28860 -11.12888 -10.92933 -10.81702 -10.60236 -10.50837 -10.35110 -9.98239 -9.17244 -9.03628 -8.84293 -8.79034 -8.19276 -8.09900 -6.93792 -6.65489 -5.19114 1.04124 1.57934 1.86022 2.03171 2.85524 2.93205 3.02125 3.06048 3.36790 3.76708 4.08307 4.12908 4.26567 4.45720 4.58947 4.81274 5.00614 5.08250 5.13126 5.18093 5.35017 5.40521 5.40921 5.52756 5.55077 5.59936 5.66693 5.70348 5.77434 5.83079 5.86891 5.92384 6.09072 6.10496 6.11605 6.27480 6.42014 6.69573 6.76493 6.81074 7.00792 7.13309 7.48129 7.54651 7.74546 8.41390 8.53642 8.93920 10.00961 10.23224 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.031823 B = 0.002231 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.651893 B =12547.842382 C =13232.046331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.029 4.029 3 C -0.143 4.143 4 C -0.138 4.138 5 C -0.079 4.079 6 C -0.119 4.119 7 C -0.090 4.090 8 C -0.004 4.004 9 C 0.119 3.881 10 C -0.387 4.387 11 S 0.260 5.740 12 C 0.296 3.704 13 N -0.635 5.635 14 C 0.529 3.471 15 O -0.551 6.551 16 C -0.521 4.521 17 H 0.078 0.922 18 C 0.086 3.914 19 N -0.734 5.734 20 Si 0.920 3.080 21 H -0.268 1.268 22 H -0.275 1.275 23 H -0.260 1.260 24 N -0.538 5.538 25 C -0.106 4.106 26 C -0.123 4.123 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.118 0.882 37 H 0.131 0.869 38 H 0.161 0.839 39 H 0.406 0.594 40 H 0.278 0.722 41 H 0.122 0.878 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.483 11.154 -15.488 19.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.029 4.029 3 C -0.200 4.200 4 C -0.195 4.195 5 C -0.079 4.079 6 C -0.137 4.137 7 C -0.109 4.109 8 C -0.007 4.007 9 C -0.017 4.017 10 C -0.530 4.530 11 S 0.513 5.487 12 C -0.072 4.072 13 N -0.283 5.283 14 C 0.341 3.659 15 O -0.436 6.436 16 C -0.556 4.556 17 H 0.096 0.904 18 C -0.139 4.139 19 N -0.361 5.361 20 Si 0.744 3.256 21 H -0.193 1.193 22 H -0.200 1.200 23 H -0.184 1.184 24 N -0.263 5.263 25 C -0.126 4.126 26 C -0.141 4.141 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.136 0.864 37 H 0.149 0.851 38 H 0.179 0.821 39 H 0.243 0.757 40 H 0.089 0.911 41 H 0.140 0.860 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.601 11.271 -14.105 18.632 hybrid contribution -0.652 -0.761 -0.819 1.294 sum -5.253 10.510 -14.923 18.994 Atomic orbital electron populations 1.21887 0.93851 1.02097 1.01675 1.19478 0.95586 0.94931 0.92883 1.21957 1.01218 0.95101 1.01761 1.21887 1.01286 1.00258 0.96083 1.19821 0.98191 0.94112 0.95823 1.20869 1.00874 0.94209 0.97714 1.21318 0.96174 1.00368 0.93043 1.18278 0.97203 0.92706 0.92508 1.18571 0.98826 0.88830 0.95427 1.27328 1.12936 1.07462 1.05231 1.85109 1.46793 0.97933 1.18879 1.24444 0.96917 0.93332 0.92534 1.43526 1.52442 1.06754 1.25540 1.17008 0.80778 0.90061 0.78088 1.90632 1.43738 1.53759 1.55465 1.19698 1.26957 0.96544 1.12352 0.90379 1.25804 0.93317 0.99877 0.94944 1.70016 1.18784 1.35437 1.11817 0.86125 0.79832 0.81316 0.78353 1.19306 1.19977 1.18413 1.66671 1.29417 1.12484 1.17700 1.21172 1.00152 0.93673 0.97579 1.20984 0.98876 0.99933 0.94309 0.92489 0.92582 0.92391 0.92255 0.92592 0.92260 0.92394 0.92576 0.92491 0.86384 0.85148 0.82135 0.75738 0.91089 0.85995 0.85790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 8.29 37.16 0.31 -0.81 16 2 C -0.03 -0.25 0.85 -155.66 -0.13 -0.39 16 3 C -0.14 -1.09 7.13 37.16 0.26 -0.82 16 4 C -0.14 -1.12 8.29 37.16 0.31 -0.81 16 5 C -0.08 -0.90 4.77 -104.48 -0.50 -1.40 16 6 C -0.12 -1.48 8.69 -39.64 -0.34 -1.82 16 7 C -0.09 -1.36 9.64 -39.17 -0.38 -1.74 16 8 C 0.00 -0.07 5.88 -104.84 -0.62 -0.69 16 9 C 0.12 2.28 6.67 -84.21 -0.56 1.72 16 10 C -0.39 -7.06 10.43 30.40 0.32 -6.75 16 11 S 0.26 5.46 20.22 -107.50 -2.17 3.29 16 12 C 0.30 6.58 8.32 -88.28 -0.73 5.84 16 13 N -0.63 -14.34 5.33 -15.00 -0.08 -14.42 16 14 C 0.53 13.86 7.47 -15.43 -0.12 13.75 16 15 O -0.55 -15.84 12.32 4.95 0.06 -15.78 16 16 C -0.52 -13.24 9.23 -38.07 -0.35 -13.59 16 17 H 0.08 1.79 7.86 -52.48 -0.41 1.38 16 18 C 0.09 2.14 5.49 -17.36 -0.10 2.05 16 19 N -0.73 -19.68 11.73 55.55 0.65 -19.03 16 20 Si 0.92 18.10 29.56 -169.99 -5.03 13.08 16 21 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 22 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 23 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 24 N -0.54 -11.23 9.99 -10.29 -0.10 -11.33 16 25 C -0.11 -1.47 9.49 -39.16 -0.37 -1.84 16 26 C -0.12 -1.45 8.96 -39.63 -0.35 -1.81 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.47 7.38 -51.93 -0.38 0.09 16 30 H 0.06 0.45 7.50 -51.93 -0.39 0.06 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.45 7.51 -51.93 -0.39 0.06 16 33 H 0.06 0.47 7.37 -51.93 -0.38 0.09 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.12 1.24 7.08 -52.49 -0.37 0.87 16 37 H 0.13 2.05 7.68 -52.49 -0.40 1.65 16 38 H 0.16 2.44 6.86 -52.49 -0.36 2.08 16 39 H 0.41 8.06 8.77 -40.82 -0.36 7.70 16 40 H 0.28 6.68 8.29 -40.82 -0.34 6.35 16 41 H 0.12 1.51 6.62 -52.49 -0.35 1.17 16 42 H 0.12 1.18 5.87 -52.49 -0.31 0.88 16 LS Contribution 359.56 15.07 5.42 5.42 Total: -1.00 -29.85 359.56 -9.96 -39.81 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -5.35 Total: 8.07 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: -3.36 Total: -9.10 kcal Atomic # 7 Polarization: -45.25 SS G_CDS: 0.47 Total: -44.79 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: 0.06 Total: -15.78 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -5.03 Total: 13.08 kcal Atomic # 16 Polarization: 5.46 SS G_CDS: -2.17 Total: 3.29 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.85 -9.96 -39.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003887097.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.893 kcal (2) G-P(sol) polarization free energy of solvation -29.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds