Wall clock time and date at job start Tue Mar 31 2020 04:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47160 * 2 1 4 4 C 1.53008 * 109.46996 * 240.00094 * 2 1 3 5 5 C 1.50695 * 109.46993 * 120.00461 * 2 1 3 6 6 C 1.38429 * 119.85549 * 59.99730 * 5 2 1 7 7 C 1.37899 * 120.15283 * 179.97438 * 6 5 2 8 8 C 1.39678 * 119.84931 * 359.97438 * 7 6 5 9 9 C 1.47954 * 120.15000 * 179.97438 * 8 7 6 10 10 C 1.37317 * 122.59230 * 180.02562 * 9 8 7 11 11 S 1.71018 * 108.93068 * 179.97438 * 10 9 8 12 12 C 1.75954 * 90.64722 * 0.02562 * 11 10 9 13 13 N 1.37417 * 125.19859 * 180.02562 * 12 11 10 14 14 C 1.34772 * 120.00291 * 359.96969 * 13 12 11 15 15 O 1.21967 * 119.99578 * 0.02562 * 14 13 12 16 16 C 1.40437 * 120.00557 * 180.02562 * 14 13 12 17 17 H 1.08004 * 119.99439 * 353.70688 * 16 14 13 18 18 C 1.40056 * 120.00624 * 173.70331 * 16 14 13 19 19 N 1.30686 * 119.99177 * 6.29764 * 18 16 14 20 20 Si 1.86791 * 120.00228 * 186.28932 * 18 16 14 21 21 H 1.48500 * 109.46925 * 94.98828 * 20 18 16 22 22 H 1.48501 * 109.47545 * 214.98372 * 20 18 16 23 23 H 1.48496 * 109.47482 * 334.98885 * 20 18 16 24 24 N 1.30359 * 109.60472 * 359.75502 * 12 11 10 25 25 C 1.39682 * 119.70320 * 0.25649 * 8 7 6 26 26 C 1.37907 * 119.84679 * 359.48962 * 25 8 7 27 27 H 1.08997 * 109.47286 * 300.00095 * 1 2 3 28 28 H 1.09007 * 109.46828 * 59.99903 * 1 2 3 29 29 H 1.08999 * 109.47177 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46917 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47335 * 299.99775 * 3 2 1 32 32 H 1.09001 * 109.46860 * 60.00254 * 3 2 1 33 33 H 1.08993 * 109.46716 * 299.99877 * 4 2 1 34 34 H 1.08997 * 109.46888 * 60.00037 * 4 2 1 35 35 H 1.08996 * 109.46525 * 180.02562 * 4 2 1 36 36 H 1.08001 * 119.91919 * 0.02562 * 6 5 2 37 37 H 1.07999 * 120.07873 * 180.02562 * 7 6 5 38 38 H 1.07998 * 125.53654 * 359.95830 * 10 9 8 39 39 H 0.97005 * 119.99638 * 179.97438 * 13 12 11 40 40 H 0.97006 * 119.99364 * 180.02562 * 19 18 16 41 41 H 1.07994 * 120.07315 * 179.74071 * 25 8 7 42 42 H 1.08001 * 119.92403 * 180.25158 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0323 -0.7105 1.2304 6 6 1.6960 -2.0358 1.4464 7 6 2.1527 -2.6921 2.5699 8 6 2.9568 -2.0166 3.4909 9 6 3.4500 -2.7141 4.6989 10 6 4.2424 -2.0989 5.6365 11 16 4.6052 -3.2186 6.8772 12 6 3.6647 -4.4604 6.0589 13 7 3.4859 -5.7455 6.5114 14 6 4.0551 -6.1380 7.6683 15 8 4.7284 -5.3523 8.3139 16 6 3.8728 -7.4515 8.1304 17 1 3.1960 -8.1165 7.6144 18 6 4.5688 -7.8993 9.2604 19 7 5.2917 -7.0623 9.9566 20 14 4.4635 -9.6927 9.7722 21 1 5.6157 -10.4379 9.2047 22 1 4.4943 -9.7872 11.2539 23 1 3.1968 -10.2787 9.2651 24 7 3.1587 -3.9732 4.9607 25 6 3.2884 -0.6780 3.2692 26 6 2.8292 -0.0352 2.1388 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1301 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 -1.7489 -1.2493 34 1 1.6766 -0.2074 -2.1392 35 1 3.1300 -0.7216 -1.2490 36 1 1.0752 -2.5572 0.7328 37 1 1.8899 -3.7262 2.7370 38 1 4.5816 -1.0743 5.5968 39 1 2.9501 -6.3703 5.9980 40 1 5.7740 -7.3726 10.7390 41 1 3.9063 -0.1488 3.9795 42 1 3.0882 0.9986 1.9642 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003887097.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:18 Heat of formation + Delta-G solvation = -4.611395 kcal Electronic energy + Delta-G solvation = -24266.269800 eV Core-core repulsion = 20722.417840 eV Total energy + Delta-G solvation = -3543.851960 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.114 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.15572 -40.48378 -39.53651 -37.12430 -35.50910 -34.59925 -32.23137 -31.70664 -29.66896 -28.83856 -28.13843 -28.05545 -25.90513 -24.02996 -22.98088 -22.36084 -21.34813 -20.08306 -19.33422 -18.75794 -17.59991 -17.42064 -17.32995 -16.18176 -16.10112 -15.91820 -15.65928 -15.34473 -15.11113 -14.76418 -14.61404 -14.53479 -14.27936 -13.83715 -13.60291 -13.41286 -13.33677 -12.99110 -12.86506 -12.77129 -12.71021 -12.49602 -12.28760 -12.15187 -11.97058 -11.86764 -11.58472 -11.50453 -11.32422 -11.02101 -10.68565 -10.32409 -10.07883 -9.83162 -9.62721 -8.53223 -8.50029 -7.16536 -0.28630 0.38073 0.42624 0.53776 1.28467 1.38157 1.41096 1.58048 1.92976 2.12152 2.33242 2.43387 3.01457 3.45665 3.58158 3.72031 3.84441 4.10500 4.16239 4.17052 4.37562 4.39639 4.45549 4.55154 4.70183 4.83231 4.86862 4.94533 4.95265 5.01425 5.06229 5.08377 5.13181 5.19806 5.22754 5.31847 5.41521 5.48468 5.59776 5.60281 5.72717 5.75686 5.78318 5.88856 6.09524 6.59609 6.73974 7.15517 8.07753 8.38324 Molecular weight = 330.11amu Principal moments of inertia in cm(-1) A = 0.031823 B = 0.002231 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.651893 B =12547.842382 C =13232.046331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.029 4.029 3 C -0.144 4.144 4 C -0.138 4.138 5 C -0.069 4.069 6 C -0.119 4.119 7 C -0.104 4.104 8 C -0.039 4.039 9 C 0.107 3.893 10 C -0.368 4.368 11 S 0.227 5.773 12 C 0.270 3.730 13 N -0.633 5.633 14 C 0.516 3.484 15 O -0.587 6.587 16 C -0.543 4.543 17 H 0.097 0.903 18 C 0.035 3.965 19 N -0.783 5.783 20 Si 1.005 2.995 21 H -0.261 1.261 22 H -0.268 1.268 23 H -0.248 1.248 24 N -0.537 5.537 25 C -0.106 4.106 26 C -0.121 4.121 27 H 0.051 0.949 28 H 0.073 0.927 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.073 0.927 35 H 0.051 0.949 36 H 0.136 0.864 37 H 0.115 0.885 38 H 0.194 0.806 39 H 0.416 0.584 40 H 0.286 0.714 41 H 0.135 0.865 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.352 12.079 -17.612 22.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.029 4.029 3 C -0.201 4.201 4 C -0.195 4.195 5 C -0.069 4.069 6 C -0.137 4.137 7 C -0.123 4.123 8 C -0.041 4.041 9 C -0.028 4.028 10 C -0.510 4.510 11 S 0.479 5.521 12 C -0.098 4.098 13 N -0.281 5.281 14 C 0.328 3.672 15 O -0.475 6.475 16 C -0.578 4.578 17 H 0.115 0.885 18 C -0.186 4.186 19 N -0.410 5.410 20 Si 0.823 3.177 21 H -0.186 1.186 22 H -0.193 1.193 23 H -0.171 1.171 24 N -0.262 5.262 25 C -0.125 4.125 26 C -0.139 4.139 27 H 0.070 0.930 28 H 0.091 0.909 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.070 0.930 36 H 0.154 0.846 37 H 0.133 0.867 38 H 0.211 0.789 39 H 0.254 0.746 40 H 0.096 0.904 41 H 0.153 0.847 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -5.499 12.222 -16.284 21.090 hybrid contribution -0.449 -0.854 -0.362 1.031 sum -5.947 11.368 -16.646 21.017 Atomic orbital electron populations 1.21891 0.93155 1.02149 1.02298 1.19569 0.96086 0.95564 0.91696 1.21970 1.01344 0.94113 1.02657 1.21891 1.00949 1.00279 0.96375 1.20236 0.96618 0.93626 0.96442 1.21054 1.00718 0.94867 0.97030 1.21307 0.96895 0.99982 0.94156 1.18346 0.99463 0.94017 0.92275 1.19108 0.98757 0.88287 0.96644 1.27501 1.12010 1.08122 1.03388 1.85127 1.47399 0.99040 1.20544 1.24609 0.98293 0.93464 0.93410 1.43139 1.52608 1.07352 1.25044 1.17334 0.80753 0.90397 0.78712 1.90603 1.45203 1.54791 1.56898 1.20206 1.27697 0.96733 1.13161 0.88484 1.27007 0.92159 1.05060 0.94351 1.70132 1.19901 1.38279 1.12683 0.84879 0.80358 0.74408 0.78042 1.18591 1.19299 1.17058 1.66699 1.28926 1.13569 1.16985 1.21372 1.00028 0.92602 0.98535 1.21326 0.98086 1.01120 0.93349 0.93030 0.90851 0.92684 0.92099 0.91094 0.92104 0.92687 0.90846 0.93033 0.84583 0.86734 0.78879 0.74639 0.90389 0.84681 0.83027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 8.29 71.98 0.60 -1.22 16 2 C -0.03 -0.42 0.85 -52.93 -0.05 -0.46 16 3 C -0.14 -1.65 7.13 71.98 0.51 -1.14 16 4 C -0.14 -1.81 8.29 71.98 0.60 -1.22 16 5 C -0.07 -1.39 4.77 -19.77 -0.09 -1.49 16 6 C -0.12 -2.80 8.69 22.23 0.19 -2.61 16 7 C -0.10 -3.15 9.64 22.54 0.22 -2.94 16 8 C -0.04 -1.25 5.88 -20.01 -0.12 -1.37 16 9 C 0.11 4.11 6.67 41.50 0.28 4.39 16 10 C -0.37 -13.40 10.43 67.60 0.70 -12.70 16 11 S 0.23 9.88 20.22 -56.49 -1.14 8.74 16 12 C 0.27 12.47 8.32 179.53 1.49 13.97 16 13 N -0.63 -29.82 5.33 -319.47 -1.70 -31.52 16 14 C 0.52 28.14 7.47 84.78 0.63 28.77 16 15 O -0.59 -35.38 12.32 -5.21 -0.06 -35.45 16 16 C -0.54 -28.20 9.23 23.25 0.21 -27.98 16 17 H 0.10 4.47 7.86 -2.91 -0.02 4.45 16 18 C 0.04 1.77 5.49 85.30 0.47 2.24 16 19 N -0.78 -43.16 11.73 21.84 0.26 -42.91 16 20 Si 1.00 36.90 29.56 68.60 2.03 38.93 16 21 H -0.26 -9.26 7.11 99.48 0.71 -8.55 16 22 H -0.27 -9.49 7.11 99.48 0.71 -8.78 16 23 H -0.25 -8.49 7.11 99.48 0.71 -7.78 16 24 N -0.54 -23.08 9.99 -186.48 -1.86 -24.95 16 25 C -0.11 -2.74 9.49 22.54 0.21 -2.52 16 26 C -0.12 -2.53 8.96 22.24 0.20 -2.33 16 27 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 29 H 0.05 0.76 7.38 -2.39 -0.02 0.74 16 30 H 0.06 0.69 7.50 -2.38 -0.02 0.67 16 31 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.06 0.69 7.51 -2.39 -0.02 0.67 16 33 H 0.05 0.76 7.37 -2.39 -0.02 0.74 16 34 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.14 2.64 7.08 -2.91 -0.02 2.62 16 37 H 0.11 3.73 7.68 -2.91 -0.02 3.71 16 38 H 0.19 5.56 6.86 -2.91 -0.02 5.54 16 39 H 0.42 17.18 8.77 -92.70 -0.81 16.37 16 40 H 0.29 14.08 8.29 -92.70 -0.77 13.31 16 41 H 0.14 3.02 6.62 -2.91 -0.02 3.00 16 42 H 0.15 2.32 5.87 -2.91 -0.02 2.30 16 Total: -1.00 -67.09 359.56 3.82 -63.27 By element: Atomic # 1 Polarization: 32.23 SS G_CDS: 0.25 Total: 32.48 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: 6.06 Total: -8.60 kcal Atomic # 7 Polarization: -96.06 SS G_CDS: -3.31 Total: -99.37 kcal Atomic # 8 Polarization: -35.38 SS G_CDS: -0.06 Total: -35.45 kcal Atomic # 14 Polarization: 36.90 SS G_CDS: 2.03 Total: 38.93 kcal Atomic # 16 Polarization: 9.88 SS G_CDS: -1.14 Total: 8.74 kcal Total: -67.09 3.82 -63.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003887097.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.656 kcal (2) G-P(sol) polarization free energy of solvation -67.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds